data_5VEA # _model_server_result.job_id xMLx6wftvgcEKsxFAyagqw _model_server_result.datetime_utc '2024-11-14 06:13:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5vea # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":103}' # _entry.id 5VEA # _exptl.entry_id 5VEA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5VEA _cell.length_a 62.763 _cell.length_b 62.763 _cell.length_c 82.238 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5VEA _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z+1/3 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 27.412667 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 235 n n S C1 DMS sing 236 n n S C2 DMS sing 237 n n C1 H11 DMS sing 238 n n C1 H12 DMS sing 239 n n C1 H13 DMS sing 240 n n C2 H21 DMS sing 241 n n C2 H22 DMS sing 242 n n C2 H23 DMS sing 243 n n # _atom_sites.entry_id 5VEA _atom_sites.fract_transf_matrix[1][1] 0.015933 _atom_sites.fract_transf_matrix[1][2] 0.009199 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018398 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01216 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 3TL A 1 101 200 3TL TL3 . C 3 9AY A 1 102 201 9AY 4G3 . D 4 DMS A 1 103 300 DMS DMS . E 4 DMS A 1 104 301 DMS DMS . F 4 DMS A 1 105 303 DMS DMS . G 5 HOH A 1 201 215 HOH HOH . G 5 HOH A 2 202 227 HOH HOH . G 5 HOH A 3 203 236 HOH HOH . G 5 HOH A 4 204 247 HOH HOH . G 5 HOH A 5 205 240 HOH HOH . G 5 HOH A 6 206 232 HOH HOH . G 5 HOH A 7 207 209 HOH HOH . G 5 HOH A 8 208 257 HOH HOH . G 5 HOH A 9 209 231 HOH HOH . G 5 HOH A 10 210 214 HOH HOH . G 5 HOH A 11 211 255 HOH HOH . G 5 HOH A 12 212 221 HOH HOH . G 5 HOH A 13 213 243 HOH HOH . G 5 HOH A 14 214 216 HOH HOH . G 5 HOH A 15 215 251 HOH HOH . G 5 HOH A 16 216 217 HOH HOH . G 5 HOH A 17 217 242 HOH HOH . G 5 HOH A 18 218 213 HOH HOH . G 5 HOH A 19 219 252 HOH HOH . G 5 HOH A 20 220 235 HOH HOH . G 5 HOH A 21 221 224 HOH HOH . G 5 HOH A 22 222 205 HOH HOH . G 5 HOH A 23 223 229 HOH HOH . G 5 HOH A 24 224 256 HOH HOH . G 5 HOH A 25 225 250 HOH HOH . G 5 HOH A 26 226 244 HOH HOH . G 5 HOH A 27 227 233 HOH HOH . G 5 HOH A 28 228 223 HOH HOH . G 5 HOH A 29 229 248 HOH HOH . G 5 HOH A 30 230 246 HOH HOH . G 5 HOH A 31 231 206 HOH HOH . G 5 HOH A 32 232 241 HOH HOH . G 5 HOH A 33 233 218 HOH HOH . G 5 HOH A 34 234 226 HOH HOH . G 5 HOH A 35 235 210 HOH HOH . G 5 HOH A 36 236 228 HOH HOH . G 5 HOH A 37 237 258 HOH HOH . G 5 HOH A 38 238 237 HOH HOH . G 5 HOH A 39 239 239 HOH HOH . G 5 HOH A 40 240 238 HOH HOH . G 5 HOH A 41 241 212 HOH HOH . G 5 HOH A 42 242 234 HOH HOH . G 5 HOH A 43 243 254 HOH HOH . G 5 HOH A 44 244 230 HOH HOH . G 5 HOH A 45 245 249 HOH HOH . G 5 HOH A 46 246 225 HOH HOH . G 5 HOH A 47 247 253 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . D 4 2.081 35.282 4.084 1 43.57 ? S DMS 103 A 1 HETATM 2 O O DMS . . . D 4 3.305 34.173 4.056 1 41.93 ? O DMS 103 A 1 HETATM 3 C C1 DMS . . . D 4 0.395 35.013 3.566 1 42.92 ? C1 DMS 103 A 1 HETATM 4 C C2 DMS . . . D 4 2.032 36.497 5.429 1 41.03 ? C2 DMS 103 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #