data_5VEU # _model_server_result.job_id 9CaK-GozoOSxMk8zU9PLOQ _model_server_result.datetime_utc '2024-11-04 20:58:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5veu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":602}' # _entry.id 5VEU # _exptl.entry_id 5VEU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 720.944 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description RITONAVIR _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5VEU _cell.length_a 148.988 _cell.length_b 198.384 _cell.length_c 234.881 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5VEU _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 ? monomeric 1 author_defined_assembly 5 ? monomeric 1 author_defined_assembly 6 ? monomeric 1 author_defined_assembly 7 ? monomeric 1 author_defined_assembly 8 ? monomeric 1 author_defined_assembly 9 ? monomeric 1 author_defined_assembly 10 ? monomeric 1 author_defined_assembly 11 ? monomeric 1 author_defined_assembly 12 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,M,N 1 1 B,O,P 2 1 C,Q 3 1 D,R 4 1 E,S 5 1 F,T 6 1 G,U 7 1 H,V,W 8 1 I,X 9 1 J,Y 10 1 K,Z 11 1 L,AA 12 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 N N N ? 3 P N N ? 3 W N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 420 A CYS 441 1_555 M FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? metalc ? metalc2 M FE HEM . A HEM 601 1_555 N N5 RIT . A RIT 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? metalc ? metalc3 B SG CYS 420 B CYS 441 1_555 O FE HEM . B HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc4 O FE HEM . B HEM 601 1_555 P N5 RIT . B RIT 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? metalc ? metalc5 C SG CYS 420 C CYS 441 1_555 Q FE HEM . C HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? metalc ? metalc6 D SG CYS 420 D CYS 441 1_555 R FE HEM . D HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc7 E SG CYS 420 E CYS 441 1_555 S FE HEM . E HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc8 F SG CYS 420 F CYS 441 1_555 T FE HEM . F HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? metalc ? metalc9 G SG CYS 420 G CYS 441 1_555 U FE HEM . G HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? metalc ? metalc10 H SG CYS 420 H CYS 441 1_555 V FE HEM . H HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc11 V FE HEM . H HEM 601 1_555 W N5 RIT . H RIT 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc12 I SG CYS 420 I CYS 441 1_555 X FE HEM . I HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc13 J SG CYS 420 J CYS 441 1_555 Y FE HEM . J HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? metalc ? metalc14 K SG CYS 420 K CYS 441 1_555 Z FE HEM . K HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? metalc ? metalc15 L SG CYS 420 L CYS 441 1_555 AA FE HEM . L HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? # _chem_comp.formula 'C37 H48 N6 O5 S2' _chem_comp.formula_weight 720.944 _chem_comp.id RIT _chem_comp.mon_nstd_flag . _chem_comp.name RITONAVIR _chem_comp.type peptide-like _chem_comp.pdbx_synonyms A-84538 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 RIT doub 357 n y C1 N5 RIT sing 358 n y C1 H1 RIT sing 359 n n C2 S3 RIT sing 360 n y C2 C6 RIT sing 361 n n S3 C4 RIT sing 362 n y C4 N5 RIT doub 363 n y C4 H4 RIT sing 364 n n C6 O7 RIT sing 365 n n C6 H61 RIT sing 366 n n C6 H62A RIT sing 367 n n O7 C10 RIT sing 368 n n C10 N11 RIT sing 369 n n C10 O24 RIT doub 370 n n N11 C12 RIT sing 371 n n N11 H11 RIT sing 372 n n C12 C13 RIT sing 373 n n C12 C26 RIT sing 374 n n C12 H12 RIT sing 375 n n C13 C14 RIT sing 376 n n C13 O41 RIT sing 377 n n C13 H13 RIT sing 378 n n C14 C15 RIT sing 379 n n C14 H141 RIT sing 380 n n C14 H142 RIT sing 381 n n C15 C44 RIT sing 382 n n C15 N58 RIT sing 383 n n C15 H15 RIT sing 384 n n C18 C19 RIT sing 385 n n C18 N58 RIT sing 386 n n C18 O61 RIT doub 387 n n C19 N20 RIT sing 388 n n C19 C62 RIT sing 389 n n C19 H19 RIT sing 390 n n N20 C21 RIT sing 391 n n N20 H20 RIT sing 392 n n C21 N74 RIT sing 393 n n C21 O76 RIT doub 394 n n C26 C28 RIT sing 395 n n C26 H261 RIT sing 396 n n C26 H262 RIT sing 397 n n C28 C31 RIT doub 398 n y C28 C35 RIT sing 399 n y C31 C32 RIT sing 400 n y C31 H31 RIT sing 401 n n C32 C33 RIT doub 402 n y C32 H32 RIT sing 403 n n C33 C34 RIT sing 404 n y C33 H33 RIT sing 405 n n C34 C35 RIT doub 406 n y C34 H34 RIT sing 407 n n C35 H35 RIT sing 408 n n O41 HO4 RIT sing 409 n n C44 C45 RIT sing 410 n n C44 H441 RIT sing 411 n n C44 H442 RIT sing 412 n n C45 C48 RIT doub 413 n y C45 C52 RIT sing 414 n y C48 C49 RIT sing 415 n y C48 H48 RIT sing 416 n n C49 C50 RIT doub 417 n y C49 H49 RIT sing 418 n n C50 C51 RIT sing 419 n y C50 H50 RIT sing 420 n n C51 C52 RIT doub 421 n y C51 H51 RIT sing 422 n n C52 H52 RIT sing 423 n n N58 H58 RIT sing 424 n n C62 C64 RIT sing 425 n n C62 C68 RIT sing 426 n n C62 H62 RIT sing 427 n n C64 H641 RIT sing 428 n n C64 H642 RIT sing 429 n n C64 H643 RIT sing 430 n n C68 H681 RIT sing 431 n n C68 H682 RIT sing 432 n n C68 H683 RIT sing 433 n n N74 C75 RIT sing 434 n n N74 C95 RIT sing 435 n n C75 C77 RIT sing 436 n n C75 H751 RIT sing 437 n n C75 H752 RIT sing 438 n n C77 C80 RIT doub 439 n y C77 N83 RIT sing 440 n y C80 S81 RIT sing 441 n y C80 H80 RIT sing 442 n n S81 C82 RIT sing 443 n y C82 N83 RIT doub 444 n y C82 C85 RIT sing 445 n n C85 C86 RIT sing 446 n n C85 C90 RIT sing 447 n n C85 H85 RIT sing 448 n n C86 H861 RIT sing 449 n n C86 H862 RIT sing 450 n n C86 H863 RIT sing 451 n n C90 H901 RIT sing 452 n n C90 H902 RIT sing 453 n n C90 H903 RIT sing 454 n n C95 H951 RIT sing 455 n n C95 H952 RIT sing 456 n n C95 H953 RIT sing 457 n n # _atom_sites.entry_id 5VEU _atom_sites.fract_transf_matrix[1][1] 0.006712 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005041 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004257 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 2 HEM A 1 601 500 HEM HEM . N 3 RIT A 1 602 501 RIT RIT . O 2 HEM B 1 601 500 HEM HEM . P 3 RIT B 1 602 501 RIT RIT . Q 2 HEM C 1 601 500 HEM HEM . R 2 HEM D 1 601 500 HEM HEM . S 2 HEM E 1 601 500 HEM HEM . T 2 HEM F 1 601 500 HEM HEM . U 2 HEM G 1 601 500 HEM HEM . V 2 HEM H 1 601 500 HEM HEM . W 3 RIT H 1 602 501 RIT RIT . X 2 HEM I 1 601 500 HEM HEM . Y 2 HEM J 1 601 500 HEM HEM . Z 2 HEM K 1 601 500 HEM HEM . AA 2 HEM L 1 601 500 HEM HEM . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RIT . . . N 3 -7.513 -41.899 24.909 1 41.57 ? C1 RIT 602 A 1 HETATM 2 C C2 RIT . . . N 3 -7.484 -42.936 24.044 1 47.19 ? C2 RIT 602 A 1 HETATM 3 S S3 RIT . . . N 3 -8.642 -42.672 22.859 1 74.4 ? S3 RIT 602 A 1 HETATM 4 C C4 RIT . . . N 3 -9.09 -41.188 23.582 1 42.14 ? C4 RIT 602 A 1 HETATM 5 N N5 RIT . . . N 3 -8.428 -40.887 24.655 1 39.93 ? N5 RIT 602 A 1 HETATM 6 C C6 RIT . . . N 3 -6.569 -44.117 24.061 1 55.84 ? C6 RIT 602 A 1 HETATM 7 O O7 RIT . . . N 3 -6.972 -45.106 25.034 1 59.85 ? O7 RIT 602 A 1 HETATM 8 C C10 RIT . . . N 3 -7.462 -46.255 24.533 1 63.99 ? C10 RIT 602 A 1 HETATM 9 O O24 RIT . . . N 3 -7.694 -46.446 23.358 1 60.36 ? O24 RIT 602 A 1 HETATM 10 N N11 RIT . . . N 3 -7.633 -47.16 25.51 1 70.78 ? N11 RIT 602 A 1 HETATM 11 C C12 RIT . . . N 3 -8.051 -48.53 25.231 1 80.93 ? C12 RIT 602 A 1 HETATM 12 C C13 RIT . . . N 3 -9.012 -49.078 26.292 1 86.38 ? C13 RIT 602 A 1 HETATM 13 C C14 RIT . . . N 3 -10.269 -48.236 26.452 1 86.13 ? C14 RIT 602 A 1 HETATM 14 C C15 RIT . . . N 3 -11.177 -48.185 25.227 1 87.39 ? C15 RIT 602 A 1 HETATM 15 C C26 RIT . . . N 3 -6.824 -49.45 25.185 1 72.55 ? C26 RIT 602 A 1 HETATM 16 C C28 RIT . . . N 3 -5.761 -49.017 24.205 1 60.42 ? C28 RIT 602 A 1 HETATM 17 C C31 RIT . . . N 3 -5.986 -49.08 22.839 1 60.87 ? C31 RIT 602 A 1 HETATM 18 C C32 RIT . . . N 3 -5.013 -48.678 21.94 1 60.05 ? C32 RIT 602 A 1 HETATM 19 C C33 RIT . . . N 3 -3.8 -48.209 22.396 1 55.88 ? C33 RIT 602 A 1 HETATM 20 C C34 RIT . . . N 3 -3.561 -48.143 23.751 1 55.23 ? C34 RIT 602 A 1 HETATM 21 C C35 RIT . . . N 3 -4.535 -48.545 24.649 1 61.53 ? C35 RIT 602 A 1 HETATM 22 O O41 RIT . . . N 3 -8.354 -49.162 27.557 1 76.34 ? O41 RIT 602 A 1 HETATM 23 C C44 RIT . . . N 3 -12.295 -47.161 25.458 1 79.06 ? C44 RIT 602 A 1 HETATM 24 C C45 RIT . . . N 3 -11.812 -45.732 25.476 1 71.35 ? C45 RIT 602 A 1 HETATM 25 C C48 RIT . . . N 3 -11.078 -45.243 26.546 1 62.95 ? C48 RIT 602 A 1 HETATM 26 C C49 RIT . . . N 3 -10.612 -43.94 26.548 1 54.25 ? C49 RIT 602 A 1 HETATM 27 C C50 RIT . . . N 3 -10.881 -43.108 25.485 1 50.92 ? C50 RIT 602 A 1 HETATM 28 C C51 RIT . . . N 3 -11.616 -43.579 24.42 1 51.81 ? C51 RIT 602 A 1 HETATM 29 C C52 RIT . . . N 3 -12.078 -44.883 24.414 1 62.94 ? C52 RIT 602 A 1 HETATM 30 N N58 RIT . . . N 3 -11.748 -49.503 24.963 1 98.19 ? N58 RIT 602 A 1 HETATM 31 N N20 RIT . . . N 3 -12.897 -51.834 22.351 1 99.33 ? N20 RIT 602 A 1 HETATM 32 C C19 RIT . . . N 3 -12.829 -51.282 23.698 1 98.71 ? C19 RIT 602 A 1 HETATM 33 C C18 RIT . . . N 3 -12.271 -49.861 23.786 1 100.96 ? C18 RIT 602 A 1 HETATM 34 O O61 RIT . . . N 3 -12.336 -49.104 22.821 1 96.3 ? O61 RIT 602 A 1 HETATM 35 C C62 RIT . . . N 3 -12.132 -52.235 24.694 1 90.8 ? C62 RIT 602 A 1 HETATM 36 C C64 RIT . . . N 3 -12.772 -53.612 24.668 1 85.27 ? C64 RIT 602 A 1 HETATM 37 C C68 RIT . . . N 3 -10.622 -52.344 24.468 1 84.46 ? C68 RIT 602 A 1 HETATM 38 C C21 RIT . . . N 3 -11.872 -51.819 21.473 1 107.15 ? C21 RIT 602 A 1 HETATM 39 N N74 RIT . . . N 3 -12.018 -52.61 20.377 1 105.68 ? N74 RIT 602 A 1 HETATM 40 C C75 RIT . . . N 3 -10.947 -52.684 19.395 1 106.81 ? C75 RIT 602 A 1 HETATM 41 O O76 RIT . . . N 3 -10.873 -51.136 21.645 1 110.35 ? O76 RIT 602 A 1 HETATM 42 C C77 RIT . . . N 3 -9.789 -53.382 20.048 1 107.97 ? C77 RIT 602 A 1 HETATM 43 C C80 RIT . . . N 3 -9.776 -54.649 20.532 1 102.22 ? C80 RIT 602 A 1 HETATM 44 S S81 RIT . . . N 3 -8.265 -54.991 21.271 1 111.89 ? S81 RIT 602 A 1 HETATM 45 C C82 RIT . . . N 3 -7.733 -53.394 20.873 1 110.31 ? C82 RIT 602 A 1 HETATM 46 N N83 RIT . . . N 3 -8.614 -52.671 20.24 1 104.59 ? N83 RIT 602 A 1 HETATM 47 C C85 RIT . . . N 3 -6.374 -52.863 21.229 1 93.44 ? C85 RIT 602 A 1 HETATM 48 C C86 RIT . . . N 3 -6.108 -53.103 22.706 1 80.67 ? C86 RIT 602 A 1 HETATM 49 C C90 RIT . . . N 3 -5.329 -53.52 20.343 1 83.79 ? C90 RIT 602 A 1 HETATM 50 C C95 RIT . . . N 3 -13.207 -53.407 20.114 1 90.89 ? C95 RIT 602 A 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 67 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 50 #