data_5VEU
#
_model_server_result.job_id            Z_eapbrOZcqGLRomlIo27A 
_model_server_result.datetime_utc      '2024-11-27 13:27:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5veu 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":602}' 
#
_entry.id    5VEU 
#
_exptl.entry_id    5VEU 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              720.944 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            RITONAVIR 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5VEU 
_cell.length_a            148.988 
_cell.length_b            198.384 
_cell.length_c            234.881 
_cell.Z_PDB               48 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5VEU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
? monomeric 1 author_defined_assembly 5 
? monomeric 1 author_defined_assembly 6 
? monomeric 1 author_defined_assembly 7 
? monomeric 1 author_defined_assembly 8 
? monomeric 1 author_defined_assembly 9 
? monomeric 1 author_defined_assembly 10 
? monomeric 1 author_defined_assembly 11 
? monomeric 1 author_defined_assembly 12 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,M,N 1 1 
B,O,P 2 1 
C,Q 3 1 
D,R 4 1 
E,S 5 1 
F,T 6 1 
G,U 7 1 
H,V,W 8 1 
I,X 9 1 
J,Y 10 1 
K,Z 11 1 
L,AA 12 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 N N N 
? 3 P N N 
? 3 W N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 420 A CYS 441 1_555 M FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? 
metalc ? metalc2 M FE HEM . A HEM 601 1_555 N N5 RIT . A RIT 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? 
metalc ? metalc3 B SG CYS 420 B CYS 441 1_555 O FE HEM . B HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? 
metalc ? metalc4 O FE HEM . B HEM 601 1_555 P N5 RIT . B RIT 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? 
metalc ? metalc5 C SG CYS 420 C CYS 441 1_555 Q FE HEM . C HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? 
metalc ? metalc6 D SG CYS 420 D CYS 441 1_555 R FE HEM . D HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? 
metalc ? metalc7 E SG CYS 420 E CYS 441 1_555 S FE HEM . E HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? 
metalc ? metalc8 F SG CYS 420 F CYS 441 1_555 T FE HEM . F HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? 
metalc ? metalc9 G SG CYS 420 G CYS 441 1_555 U FE HEM . G HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? 
metalc ? metalc10 H SG CYS 420 H CYS 441 1_555 V FE HEM . H HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? 
metalc ? metalc11 V FE HEM . H HEM 601 1_555 W N5 RIT . H RIT 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? 
metalc ? metalc12 I SG CYS 420 I CYS 441 1_555 X FE HEM . I HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? 
metalc ? metalc13 J SG CYS 420 J CYS 441 1_555 Y FE HEM . J HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? 
metalc ? metalc14 K SG CYS 420 K CYS 441 1_555 Z FE HEM . K HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? 
metalc ? metalc15 L SG CYS 420 L CYS 441 1_555 AA FE HEM . L HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? 
#
_chem_comp.formula           'C37 H48 N6 O5 S2' 
_chem_comp.formula_weight    720.944 
_chem_comp.id                RIT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              RITONAVIR 
_chem_comp.type              peptide-like 
_chem_comp.pdbx_synonyms     A-84538 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 RIT doub 357 n y 
C1 N5 RIT sing 358 n y 
C1 H1 RIT sing 359 n n 
C2 S3 RIT sing 360 n y 
C2 C6 RIT sing 361 n n 
S3 C4 RIT sing 362 n y 
C4 N5 RIT doub 363 n y 
C4 H4 RIT sing 364 n n 
C6 O7 RIT sing 365 n n 
C6 H61 RIT sing 366 n n 
C6 H62A RIT sing 367 n n 
O7 C10 RIT sing 368 n n 
C10 N11 RIT sing 369 n n 
C10 O24 RIT doub 370 n n 
N11 C12 RIT sing 371 n n 
N11 H11 RIT sing 372 n n 
C12 C13 RIT sing 373 n n 
C12 C26 RIT sing 374 n n 
C12 H12 RIT sing 375 n n 
C13 C14 RIT sing 376 n n 
C13 O41 RIT sing 377 n n 
C13 H13 RIT sing 378 n n 
C14 C15 RIT sing 379 n n 
C14 H141 RIT sing 380 n n 
C14 H142 RIT sing 381 n n 
C15 C44 RIT sing 382 n n 
C15 N58 RIT sing 383 n n 
C15 H15 RIT sing 384 n n 
C18 C19 RIT sing 385 n n 
C18 N58 RIT sing 386 n n 
C18 O61 RIT doub 387 n n 
C19 N20 RIT sing 388 n n 
C19 C62 RIT sing 389 n n 
C19 H19 RIT sing 390 n n 
N20 C21 RIT sing 391 n n 
N20 H20 RIT sing 392 n n 
C21 N74 RIT sing 393 n n 
C21 O76 RIT doub 394 n n 
C26 C28 RIT sing 395 n n 
C26 H261 RIT sing 396 n n 
C26 H262 RIT sing 397 n n 
C28 C31 RIT doub 398 n y 
C28 C35 RIT sing 399 n y 
C31 C32 RIT sing 400 n y 
C31 H31 RIT sing 401 n n 
C32 C33 RIT doub 402 n y 
C32 H32 RIT sing 403 n n 
C33 C34 RIT sing 404 n y 
C33 H33 RIT sing 405 n n 
C34 C35 RIT doub 406 n y 
C34 H34 RIT sing 407 n n 
C35 H35 RIT sing 408 n n 
O41 HO4 RIT sing 409 n n 
C44 C45 RIT sing 410 n n 
C44 H441 RIT sing 411 n n 
C44 H442 RIT sing 412 n n 
C45 C48 RIT doub 413 n y 
C45 C52 RIT sing 414 n y 
C48 C49 RIT sing 415 n y 
C48 H48 RIT sing 416 n n 
C49 C50 RIT doub 417 n y 
C49 H49 RIT sing 418 n n 
C50 C51 RIT sing 419 n y 
C50 H50 RIT sing 420 n n 
C51 C52 RIT doub 421 n y 
C51 H51 RIT sing 422 n n 
C52 H52 RIT sing 423 n n 
N58 H58 RIT sing 424 n n 
C62 C64 RIT sing 425 n n 
C62 C68 RIT sing 426 n n 
C62 H62 RIT sing 427 n n 
C64 H641 RIT sing 428 n n 
C64 H642 RIT sing 429 n n 
C64 H643 RIT sing 430 n n 
C68 H681 RIT sing 431 n n 
C68 H682 RIT sing 432 n n 
C68 H683 RIT sing 433 n n 
N74 C75 RIT sing 434 n n 
N74 C95 RIT sing 435 n n 
C75 C77 RIT sing 436 n n 
C75 H751 RIT sing 437 n n 
C75 H752 RIT sing 438 n n 
C77 C80 RIT doub 439 n y 
C77 N83 RIT sing 440 n y 
C80 S81 RIT sing 441 n y 
C80 H80 RIT sing 442 n n 
S81 C82 RIT sing 443 n y 
C82 N83 RIT doub 444 n y 
C82 C85 RIT sing 445 n n 
C85 C86 RIT sing 446 n n 
C85 C90 RIT sing 447 n n 
C85 H85 RIT sing 448 n n 
C86 H861 RIT sing 449 n n 
C86 H862 RIT sing 450 n n 
C86 H863 RIT sing 451 n n 
C90 H901 RIT sing 452 n n 
C90 H902 RIT sing 453 n n 
C90 H903 RIT sing 454 n n 
C95 H951 RIT sing 455 n n 
C95 H952 RIT sing 456 n n 
C95 H953 RIT sing 457 n n 
#
_atom_sites.entry_id                     5VEU 
_atom_sites.fract_transf_matrix[1][1]    0.006712 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005041 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004257 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
M 2 HEM A 1 601 500 HEM HEM . 
N 3 RIT A 1 602 501 RIT RIT . 
O 2 HEM B 1 601 500 HEM HEM . 
P 3 RIT B 1 602 501 RIT RIT . 
Q 2 HEM C 1 601 500 HEM HEM . 
R 2 HEM D 1 601 500 HEM HEM . 
S 2 HEM E 1 601 500 HEM HEM . 
T 2 HEM F 1 601 500 HEM HEM . 
U 2 HEM G 1 601 500 HEM HEM . 
V 2 HEM H 1 601 500 HEM HEM . 
W 3 RIT H 1 602 501 RIT RIT . 
X 2 HEM I 1 601 500 HEM HEM . 
Y 2 HEM J 1 601 500 HEM HEM . 
Z 2 HEM K 1 601 500 HEM HEM . 
AA 2 HEM L 1 601 500 HEM HEM . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 RIT . . . N 3 -7.513 -41.899 24.909 1 41.57 ? C1 RIT 602 A 1 
HETATM 2 C C2 RIT . . . N 3 -7.484 -42.936 24.044 1 47.19 ? C2 RIT 602 A 1 
HETATM 3 S S3 RIT . . . N 3 -8.642 -42.672 22.859 1 74.4 ? S3 RIT 602 A 1 
HETATM 4 C C4 RIT . . . N 3 -9.09 -41.188 23.582 1 42.14 ? C4 RIT 602 A 1 
HETATM 5 N N5 RIT . . . N 3 -8.428 -40.887 24.655 1 39.93 ? N5 RIT 602 A 1 
HETATM 6 C C6 RIT . . . N 3 -6.569 -44.117 24.061 1 55.84 ? C6 RIT 602 A 1 
HETATM 7 O O7 RIT . . . N 3 -6.972 -45.106 25.034 1 59.85 ? O7 RIT 602 A 1 
HETATM 8 C C10 RIT . . . N 3 -7.462 -46.255 24.533 1 63.99 ? C10 RIT 602 A 1 
HETATM 9 O O24 RIT . . . N 3 -7.694 -46.446 23.358 1 60.36 ? O24 RIT 602 A 1 
HETATM 10 N N11 RIT . . . N 3 -7.633 -47.16 25.51 1 70.78 ? N11 RIT 602 A 1 
HETATM 11 C C12 RIT . . . N 3 -8.051 -48.53 25.231 1 80.93 ? C12 RIT 602 A 1 
HETATM 12 C C13 RIT . . . N 3 -9.012 -49.078 26.292 1 86.38 ? C13 RIT 602 A 1 
HETATM 13 C C14 RIT . . . N 3 -10.269 -48.236 26.452 1 86.13 ? C14 RIT 602 A 1 
HETATM 14 C C15 RIT . . . N 3 -11.177 -48.185 25.227 1 87.39 ? C15 RIT 602 A 1 
HETATM 15 C C26 RIT . . . N 3 -6.824 -49.45 25.185 1 72.55 ? C26 RIT 602 A 1 
HETATM 16 C C28 RIT . . . N 3 -5.761 -49.017 24.205 1 60.42 ? C28 RIT 602 A 1 
HETATM 17 C C31 RIT . . . N 3 -5.986 -49.08 22.839 1 60.87 ? C31 RIT 602 A 1 
HETATM 18 C C32 RIT . . . N 3 -5.013 -48.678 21.94 1 60.05 ? C32 RIT 602 A 1 
HETATM 19 C C33 RIT . . . N 3 -3.8 -48.209 22.396 1 55.88 ? C33 RIT 602 A 1 
HETATM 20 C C34 RIT . . . N 3 -3.561 -48.143 23.751 1 55.23 ? C34 RIT 602 A 1 
HETATM 21 C C35 RIT . . . N 3 -4.535 -48.545 24.649 1 61.53 ? C35 RIT 602 A 1 
HETATM 22 O O41 RIT . . . N 3 -8.354 -49.162 27.557 1 76.34 ? O41 RIT 602 A 1 
HETATM 23 C C44 RIT . . . N 3 -12.295 -47.161 25.458 1 79.06 ? C44 RIT 602 A 1 
HETATM 24 C C45 RIT . . . N 3 -11.812 -45.732 25.476 1 71.35 ? C45 RIT 602 A 1 
HETATM 25 C C48 RIT . . . N 3 -11.078 -45.243 26.546 1 62.95 ? C48 RIT 602 A 1 
HETATM 26 C C49 RIT . . . N 3 -10.612 -43.94 26.548 1 54.25 ? C49 RIT 602 A 1 
HETATM 27 C C50 RIT . . . N 3 -10.881 -43.108 25.485 1 50.92 ? C50 RIT 602 A 1 
HETATM 28 C C51 RIT . . . N 3 -11.616 -43.579 24.42 1 51.81 ? C51 RIT 602 A 1 
HETATM 29 C C52 RIT . . . N 3 -12.078 -44.883 24.414 1 62.94 ? C52 RIT 602 A 1 
HETATM 30 N N58 RIT . . . N 3 -11.748 -49.503 24.963 1 98.19 ? N58 RIT 602 A 1 
HETATM 31 N N20 RIT . . . N 3 -12.897 -51.834 22.351 1 99.33 ? N20 RIT 602 A 1 
HETATM 32 C C19 RIT . . . N 3 -12.829 -51.282 23.698 1 98.71 ? C19 RIT 602 A 1 
HETATM 33 C C18 RIT . . . N 3 -12.271 -49.861 23.786 1 100.96 ? C18 RIT 602 A 1 
HETATM 34 O O61 RIT . . . N 3 -12.336 -49.104 22.821 1 96.3 ? O61 RIT 602 A 1 
HETATM 35 C C62 RIT . . . N 3 -12.132 -52.235 24.694 1 90.8 ? C62 RIT 602 A 1 
HETATM 36 C C64 RIT . . . N 3 -12.772 -53.612 24.668 1 85.27 ? C64 RIT 602 A 1 
HETATM 37 C C68 RIT . . . N 3 -10.622 -52.344 24.468 1 84.46 ? C68 RIT 602 A 1 
HETATM 38 C C21 RIT . . . N 3 -11.872 -51.819 21.473 1 107.15 ? C21 RIT 602 A 1 
HETATM 39 N N74 RIT . . . N 3 -12.018 -52.61 20.377 1 105.68 ? N74 RIT 602 A 1 
HETATM 40 C C75 RIT . . . N 3 -10.947 -52.684 19.395 1 106.81 ? C75 RIT 602 A 1 
HETATM 41 O O76 RIT . . . N 3 -10.873 -51.136 21.645 1 110.35 ? O76 RIT 602 A 1 
HETATM 42 C C77 RIT . . . N 3 -9.789 -53.382 20.048 1 107.97 ? C77 RIT 602 A 1 
HETATM 43 C C80 RIT . . . N 3 -9.776 -54.649 20.532 1 102.22 ? C80 RIT 602 A 1 
HETATM 44 S S81 RIT . . . N 3 -8.265 -54.991 21.271 1 111.89 ? S81 RIT 602 A 1 
HETATM 45 C C82 RIT . . . N 3 -7.733 -53.394 20.873 1 110.31 ? C82 RIT 602 A 1 
HETATM 46 N N83 RIT . . . N 3 -8.614 -52.671 20.24 1 104.59 ? N83 RIT 602 A 1 
HETATM 47 C C85 RIT . . . N 3 -6.374 -52.863 21.229 1 93.44 ? C85 RIT 602 A 1 
HETATM 48 C C86 RIT . . . N 3 -6.108 -53.103 22.706 1 80.67 ? C86 RIT 602 A 1 
HETATM 49 C C90 RIT . . . N 3 -5.329 -53.52 20.343 1 83.79 ? C90 RIT 602 A 1 
HETATM 50 C C95 RIT . . . N 3 -13.207 -53.407 20.114 1 90.89 ? C95 RIT 602 A 1 
#
_model_server_stats.io_time_ms              24 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    43 
_model_server_stats.query_time_ms           260 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           50 
#