data_5VEU
#
_model_server_result.job_id            iO4YB0qJGPYtp7weEVqrHg 
_model_server_result.datetime_utc      '2024-11-23 19:42:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5veu 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"P","auth_seq_id":602}' 
#
_entry.id    5VEU 
#
_exptl.entry_id    5VEU 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              720.944 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            RITONAVIR 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5VEU 
_cell.length_a            148.988 
_cell.length_b            198.384 
_cell.length_c            234.881 
_cell.Z_PDB               48 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5VEU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
? monomeric 1 author_defined_assembly 5 
? monomeric 1 author_defined_assembly 6 
? monomeric 1 author_defined_assembly 7 
? monomeric 1 author_defined_assembly 8 
? monomeric 1 author_defined_assembly 9 
? monomeric 1 author_defined_assembly 10 
? monomeric 1 author_defined_assembly 11 
? monomeric 1 author_defined_assembly 12 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,M,N 1 1 
B,O,P 2 1 
C,Q 3 1 
D,R 4 1 
E,S 5 1 
F,T 6 1 
G,U 7 1 
H,V,W 8 1 
I,X 9 1 
J,Y 10 1 
K,Z 11 1 
L,AA 12 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 N N N 
? 3 P N N 
? 3 W N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 420 A CYS 441 1_555 M FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? 
metalc ? metalc2 M FE HEM . A HEM 601 1_555 N N5 RIT . A RIT 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? 
metalc ? metalc3 B SG CYS 420 B CYS 441 1_555 O FE HEM . B HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? 
metalc ? metalc4 O FE HEM . B HEM 601 1_555 P N5 RIT . B RIT 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? 
metalc ? metalc5 C SG CYS 420 C CYS 441 1_555 Q FE HEM . C HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? 
metalc ? metalc6 D SG CYS 420 D CYS 441 1_555 R FE HEM . D HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? 
metalc ? metalc7 E SG CYS 420 E CYS 441 1_555 S FE HEM . E HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? 
metalc ? metalc8 F SG CYS 420 F CYS 441 1_555 T FE HEM . F HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? 
metalc ? metalc9 G SG CYS 420 G CYS 441 1_555 U FE HEM . G HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? 
metalc ? metalc10 H SG CYS 420 H CYS 441 1_555 V FE HEM . H HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? 
metalc ? metalc11 V FE HEM . H HEM 601 1_555 W N5 RIT . H RIT 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? 
metalc ? metalc12 I SG CYS 420 I CYS 441 1_555 X FE HEM . I HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? 
metalc ? metalc13 J SG CYS 420 J CYS 441 1_555 Y FE HEM . J HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? 
metalc ? metalc14 K SG CYS 420 K CYS 441 1_555 Z FE HEM . K HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? 
metalc ? metalc15 L SG CYS 420 L CYS 441 1_555 AA FE HEM . L HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? 
#
_chem_comp.formula           'C37 H48 N6 O5 S2' 
_chem_comp.formula_weight    720.944 
_chem_comp.id                RIT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              RITONAVIR 
_chem_comp.type              peptide-like 
_chem_comp.pdbx_synonyms     A-84538 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 RIT doub 357 n y 
C1 N5 RIT sing 358 n y 
C1 H1 RIT sing 359 n n 
C2 S3 RIT sing 360 n y 
C2 C6 RIT sing 361 n n 
S3 C4 RIT sing 362 n y 
C4 N5 RIT doub 363 n y 
C4 H4 RIT sing 364 n n 
C6 O7 RIT sing 365 n n 
C6 H61 RIT sing 366 n n 
C6 H62A RIT sing 367 n n 
O7 C10 RIT sing 368 n n 
C10 N11 RIT sing 369 n n 
C10 O24 RIT doub 370 n n 
N11 C12 RIT sing 371 n n 
N11 H11 RIT sing 372 n n 
C12 C13 RIT sing 373 n n 
C12 C26 RIT sing 374 n n 
C12 H12 RIT sing 375 n n 
C13 C14 RIT sing 376 n n 
C13 O41 RIT sing 377 n n 
C13 H13 RIT sing 378 n n 
C14 C15 RIT sing 379 n n 
C14 H141 RIT sing 380 n n 
C14 H142 RIT sing 381 n n 
C15 C44 RIT sing 382 n n 
C15 N58 RIT sing 383 n n 
C15 H15 RIT sing 384 n n 
C18 C19 RIT sing 385 n n 
C18 N58 RIT sing 386 n n 
C18 O61 RIT doub 387 n n 
C19 N20 RIT sing 388 n n 
C19 C62 RIT sing 389 n n 
C19 H19 RIT sing 390 n n 
N20 C21 RIT sing 391 n n 
N20 H20 RIT sing 392 n n 
C21 N74 RIT sing 393 n n 
C21 O76 RIT doub 394 n n 
C26 C28 RIT sing 395 n n 
C26 H261 RIT sing 396 n n 
C26 H262 RIT sing 397 n n 
C28 C31 RIT doub 398 n y 
C28 C35 RIT sing 399 n y 
C31 C32 RIT sing 400 n y 
C31 H31 RIT sing 401 n n 
C32 C33 RIT doub 402 n y 
C32 H32 RIT sing 403 n n 
C33 C34 RIT sing 404 n y 
C33 H33 RIT sing 405 n n 
C34 C35 RIT doub 406 n y 
C34 H34 RIT sing 407 n n 
C35 H35 RIT sing 408 n n 
O41 HO4 RIT sing 409 n n 
C44 C45 RIT sing 410 n n 
C44 H441 RIT sing 411 n n 
C44 H442 RIT sing 412 n n 
C45 C48 RIT doub 413 n y 
C45 C52 RIT sing 414 n y 
C48 C49 RIT sing 415 n y 
C48 H48 RIT sing 416 n n 
C49 C50 RIT doub 417 n y 
C49 H49 RIT sing 418 n n 
C50 C51 RIT sing 419 n y 
C50 H50 RIT sing 420 n n 
C51 C52 RIT doub 421 n y 
C51 H51 RIT sing 422 n n 
C52 H52 RIT sing 423 n n 
N58 H58 RIT sing 424 n n 
C62 C64 RIT sing 425 n n 
C62 C68 RIT sing 426 n n 
C62 H62 RIT sing 427 n n 
C64 H641 RIT sing 428 n n 
C64 H642 RIT sing 429 n n 
C64 H643 RIT sing 430 n n 
C68 H681 RIT sing 431 n n 
C68 H682 RIT sing 432 n n 
C68 H683 RIT sing 433 n n 
N74 C75 RIT sing 434 n n 
N74 C95 RIT sing 435 n n 
C75 C77 RIT sing 436 n n 
C75 H751 RIT sing 437 n n 
C75 H752 RIT sing 438 n n 
C77 C80 RIT doub 439 n y 
C77 N83 RIT sing 440 n y 
C80 S81 RIT sing 441 n y 
C80 H80 RIT sing 442 n n 
S81 C82 RIT sing 443 n y 
C82 N83 RIT doub 444 n y 
C82 C85 RIT sing 445 n n 
C85 C86 RIT sing 446 n n 
C85 C90 RIT sing 447 n n 
C85 H85 RIT sing 448 n n 
C86 H861 RIT sing 449 n n 
C86 H862 RIT sing 450 n n 
C86 H863 RIT sing 451 n n 
C90 H901 RIT sing 452 n n 
C90 H902 RIT sing 453 n n 
C90 H903 RIT sing 454 n n 
C95 H951 RIT sing 455 n n 
C95 H952 RIT sing 456 n n 
C95 H953 RIT sing 457 n n 
#
_atom_sites.entry_id                     5VEU 
_atom_sites.fract_transf_matrix[1][1]    0.006712 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005041 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004257 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
M 2 HEM A 1 601 500 HEM HEM . 
N 3 RIT A 1 602 501 RIT RIT . 
O 2 HEM B 1 601 500 HEM HEM . 
P 3 RIT B 1 602 501 RIT RIT . 
Q 2 HEM C 1 601 500 HEM HEM . 
R 2 HEM D 1 601 500 HEM HEM . 
S 2 HEM E 1 601 500 HEM HEM . 
T 2 HEM F 1 601 500 HEM HEM . 
U 2 HEM G 1 601 500 HEM HEM . 
V 2 HEM H 1 601 500 HEM HEM . 
W 3 RIT H 1 602 501 RIT RIT . 
X 2 HEM I 1 601 500 HEM HEM . 
Y 2 HEM J 1 601 500 HEM HEM . 
Z 2 HEM K 1 601 500 HEM HEM . 
AA 2 HEM L 1 601 500 HEM HEM . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 RIT . . . P 3 9.592 -57.165 91.63 1 60.42 ? C1 RIT 602 B 1 
HETATM 2 C C2 RIT . . . P 3 9.556 -55.956 92.231 1 63.41 ? C2 RIT 602 B 1 
HETATM 3 S S3 RIT . . . P 3 11.12 -55.358 92.323 1 56.5 ? S3 RIT 602 B 1 
HETATM 4 C C4 RIT . . . P 3 11.73 -56.757 91.552 1 57.71 ? C4 RIT 602 B 1 
HETATM 5 N N5 RIT . . . P 3 10.835 -57.637 91.235 1 55.76 ? N5 RIT 602 B 1 
HETATM 6 C C6 RIT . . . P 3 8.346 -55.226 92.722 1 73.21 ? C6 RIT 602 B 1 
HETATM 7 O O7 RIT . . . P 3 8.134 -55.413 94.142 1 76.72 ? O7 RIT 602 B 1 
HETATM 8 C C10 RIT . . . P 3 8.254 -54.309 94.908 1 81.53 ? C10 RIT 602 B 1 
HETATM 9 O O24 RIT . . . P 3 8.624 -53.231 94.501 1 84.02 ? O24 RIT 602 B 1 
HETATM 10 N N11 RIT . . . P 3 7.905 -54.575 96.18 1 87.57 ? N11 RIT 602 B 1 
HETATM 11 C C12 RIT . . . P 3 7.932 -53.552 97.221 1 90.14 ? C12 RIT 602 B 1 
HETATM 12 C C13 RIT . . . P 3 8.421 -54.103 98.565 1 97.64 ? C13 RIT 602 B 1 
HETATM 13 C C14 RIT . . . P 3 9.862 -54.589 98.522 1 98.48 ? C14 RIT 602 B 1 
HETATM 14 C C15 RIT . . . P 3 10.849 -53.648 97.833 1 95 ? C15 RIT 602 B 1 
HETATM 15 C C26 RIT . . . P 3 6.524 -52.978 97.42 1 87.71 ? C26 RIT 602 B 1 
HETATM 16 C C28 RIT . . . P 3 6.103 -52.019 96.335 1 77.92 ? C28 RIT 602 B 1 
HETATM 17 C C31 RIT . . . P 3 6.958 -51.015 95.907 1 69.49 ? C31 RIT 602 B 1 
HETATM 18 C C32 RIT . . . P 3 6.571 -50.13 94.917 1 73.24 ? C32 RIT 602 B 1 
HETATM 19 C C33 RIT . . . P 3 5.324 -50.235 94.341 1 69.87 ? C33 RIT 602 B 1 
HETATM 20 C C34 RIT . . . P 3 4.465 -51.228 94.757 1 73.26 ? C34 RIT 602 B 1 
HETATM 21 C C35 RIT . . . P 3 4.852 -52.114 95.747 1 76.85 ? C35 RIT 602 B 1 
HETATM 22 O O41 RIT . . . P 3 7.587 -55.182 98.99 1 93.97 ? O41 RIT 602 B 1 
HETATM 23 C C44 RIT . . . P 3 11.301 -54.044 96.412 1 85.47 ? C44 RIT 602 B 1 
HETATM 24 C C45 RIT . . . P 3 11.555 -55.515 96.178 1 90.35 ? C45 RIT 602 B 1 
HETATM 25 C C48 RIT . . . P 3 10.504 -56.413 96.059 1 83.98 ? C48 RIT 602 B 1 
HETATM 26 C C49 RIT . . . P 3 10.742 -57.761 95.859 1 64.68 ? C49 RIT 602 B 1 
HETATM 27 C C50 RIT . . . P 3 12.031 -58.228 95.765 1 68.91 ? C50 RIT 602 B 1 
HETATM 28 C C51 RIT . . . P 3 13.083 -57.347 95.866 1 75.53 ? C51 RIT 602 B 1 
HETATM 29 C C52 RIT . . . P 3 12.848 -56 96.068 1 88.33 ? C52 RIT 602 B 1 
HETATM 30 N N58 RIT . . . P 3 11.993 -53.4 98.71 1 98.82 ? N58 RIT 602 B 1 
HETATM 31 N N20 RIT . . . P 3 14.099 -52.738 100.545 1 99.11 ? N20 RIT 602 B 1 
HETATM 32 C C19 RIT . . . P 3 13.367 -53.986 100.63 1 102.26 ? C19 RIT 602 B 1 
HETATM 33 C C18 RIT . . . P 3 12.691 -54.366 99.315 1 100.38 ? C18 RIT 602 B 1 
HETATM 34 O O61 RIT . . . P 3 12.746 -55.521 98.905 1 97.67 ? O61 RIT 602 B 1 
HETATM 35 C C62 RIT . . . P 3 12.329 -53.923 101.763 1 96.08 ? C62 RIT 602 B 1 
HETATM 36 C C64 RIT . . . P 3 11.585 -55.242 101.899 1 90.53 ? C64 RIT 602 B 1 
HETATM 37 C C68 RIT . . . P 3 12.974 -53.526 103.08 1 94.19 ? C68 RIT 602 B 1 
HETATM 38 C C21 RIT . . . P 3 15.276 -52.653 99.903 1 99.72 ? C21 RIT 602 B 1 
HETATM 39 N N74 RIT . . . P 3 15.917 -51.456 99.983 1 99.54 ? N74 RIT 602 B 1 
HETATM 40 C C75 RIT . . . P 3 15.385 -50.323 100.728 1 101.25 ? C75 RIT 602 B 1 
HETATM 41 O O76 RIT . . . P 3 15.751 -53.602 99.296 1 91.73 ? O76 RIT 602 B 1 
HETATM 42 C C77 RIT . . . P 3 13.99 -49.922 100.339 1 105.88 ? C77 RIT 602 B 1 
HETATM 43 C C80 RIT . . . P 3 13.525 -49.746 99.08 1 108.95 ? C80 RIT 602 B 1 
HETATM 44 S S81 RIT . . . P 3 11.864 -49.318 99.11 1 129.38 ? S81 RIT 602 B 1 
HETATM 45 C C82 RIT . . . P 3 11.893 -49.404 100.836 1 115.36 ? C82 RIT 602 B 1 
HETATM 46 N N83 RIT . . . P 3 13.051 -49.724 101.343 1 105.12 ? N83 RIT 602 B 1 
HETATM 47 C C85 RIT . . . P 3 10.671 -49.138 101.676 1 112.55 ? C85 RIT 602 B 1 
HETATM 48 C C86 RIT . . . P 3 10.082 -47.781 101.316 1 97.38 ? C86 RIT 602 B 1 
HETATM 49 C C90 RIT . . . P 3 9.666 -50.256 101.457 1 102.95 ? C90 RIT 602 B 1 
HETATM 50 C C95 RIT . . . P 3 17.204 -51.261 99.332 1 88.78 ? C95 RIT 602 B 1 
#
_model_server_stats.io_time_ms              23 
_model_server_stats.parse_time_ms           104 
_model_server_stats.create_model_time_ms    235 
_model_server_stats.query_time_ms           324 
_model_server_stats.encode_time_ms          12 
_model_server_stats.element_count           50 
#