data_5VEW # _model_server_result.job_id 9Ycms9CTVXHvZYpPmdIsaQ _model_server_result.datetime_utc '2024-11-26 03:15:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5vew # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1201}' # _entry.id 5VEW # _exptl.entry_id 5VEW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 515.527 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-{4-[(R)-(3,3-dimethylcyclobutyl)({6-[4-(trifluoromethyl)-1H-imidazol-1-yl]pyridin-3-yl}amino)methyl]benzene-1-carbonyl}-beta-alanine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90.54 _cell.angle_beta 90.18 _cell.angle_gamma 107.73 _cell.entry_id 5VEW _cell.length_a 64.77 _cell.length_b 66.43 _cell.length_c 83.44 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5VEW _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 software_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,L 1 1 B,G,H,I,J,K,M 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 93 A CYS 226 1_555 A SG CYS 320 A CYS 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf2 A SG CYS 341 A CYS 317 1_555 A SG CYS 385 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf3 B SG CYS 93 B CYS 226 1_555 B SG CYS 320 B CYS 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf4 B SG CYS 341 B CYS 317 1_555 B SG CYS 385 B CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? covale ? covale1 A C LEU 99 A LEU 232 1_555 A N CSD 100 A CSD 233 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.36 ? covale ? covale2 A C CSD 100 A CSD 233 1_555 A N GLN 101 A GLN 234 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? covale ? covale3 B C LEU 99 B LEU 232 1_555 B N CSD 100 B CSD 233 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.36 ? covale ? covale4 B C CSD 100 B CSD 233 1_555 B N GLN 101 B GLN 234 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? # _chem_comp.formula 'C26 H28 F3 N5 O3' _chem_comp.formula_weight 515.527 _chem_comp.id 97Y _chem_comp.mon_nstd_flag . _chem_comp.name N-{4-[(R)-(3,3-dimethylcyclobutyl)({6-[4-(trifluoromethyl)-1H-imidazol-1-yl]pyridin-3-yl}amino)methyl]benzene-1-carbonyl}-beta-alanine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F01 C21 97Y sing 1 n n N09 C23 97Y doub 2 n y N09 C18 97Y sing 3 n y O06 C37 97Y doub 4 n n C21 C18 97Y sing 5 n n C21 F02 97Y sing 6 n n C21 F03 97Y sing 7 n n C23 N07 97Y sing 8 n y C36 C37 97Y sing 9 n n C36 C35 97Y sing 10 n n C18 C22 97Y doub 11 n y C37 O05 97Y sing 12 n n O04 C34 97Y doub 13 n n C35 N11 97Y sing 14 n n N07 C22 97Y sing 15 n y N07 C19 97Y sing 16 n n C34 N11 97Y sing 17 n n C34 C31 97Y sing 18 n n C24 C19 97Y doub 19 n y C24 C28 97Y sing 20 n y C19 N10 97Y sing 21 n y C32 C31 97Y doub 22 n y C32 C25 97Y sing 23 n y C31 C33 97Y sing 24 n y C28 C20 97Y doub 25 n y C25 C17 97Y doub 26 n y N10 C27 97Y doub 27 n y C33 C26 97Y doub 28 n y C20 C27 97Y sing 29 n y C20 N08 97Y sing 30 n n C17 C26 97Y sing 31 n y C17 C13 97Y sing 32 n n C13 N08 97Y sing 33 n n C13 C12 97Y sing 34 n n C12 C16 97Y sing 35 n n C12 C15 97Y sing 36 n n C16 C14 97Y sing 37 n n C15 C14 97Y sing 38 n n C14 C30 97Y sing 39 n n C14 C29 97Y sing 40 n n C13 H1 97Y sing 41 n n C15 H2 97Y sing 42 n n C15 H3 97Y sing 43 n n C22 H4 97Y sing 44 n n C24 H5 97Y sing 45 n n C26 H6 97Y sing 46 n n C28 H7 97Y sing 47 n n O05 H8 97Y sing 48 n n N08 H9 97Y sing 49 n n N11 H10 97Y sing 50 n n C12 H11 97Y sing 51 n n C16 H12 97Y sing 52 n n C16 H13 97Y sing 53 n n C23 H14 97Y sing 54 n n C25 H15 97Y sing 55 n n C27 H16 97Y sing 56 n n C29 H17 97Y sing 57 n n C29 H18 97Y sing 58 n n C29 H19 97Y sing 59 n n C30 H20 97Y sing 60 n n C30 H21 97Y sing 61 n n C30 H22 97Y sing 62 n n C32 H23 97Y sing 63 n n C33 H24 97Y sing 64 n n C35 H25 97Y sing 65 n n C35 H26 97Y sing 66 n n C36 H27 97Y sing 67 n n C36 H28 97Y sing 68 n n # _atom_sites.entry_id 5VEW _atom_sites.fract_transf_matrix[1][1] 0.015439 _atom_sites.fract_transf_matrix[1][2] 0.004936 _atom_sites.fract_transf_matrix[1][3] 0.000102 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015804 _atom_sites.fract_transf_matrix[2][3] 0.000172 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011985 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 97Y A 1 1201 1201 97Y LIG . D 3 OLC A 1 1202 1302 OLC OLC . E 3 OLC A 1 1203 1304 OLC OLC . F 4 OLA A 1 1204 1309 OLA OLA . G 3 OLC B 1 1201 1303 OLC OLC . H 2 97Y B 1 1202 1201 97Y LIG . I 3 OLC B 1 1203 1305 OLC OLC . J 3 OLC B 1 1204 1306 OLC OLC . K 3 OLC B 1 1205 1307 OLC OLC . L 5 HOH A 1 1301 2 HOH HOH . L 5 HOH A 2 1302 16 HOH HOH . L 5 HOH A 3 1303 18 HOH HOH . L 5 HOH A 4 1304 5 HOH HOH . L 5 HOH A 5 1305 10 HOH HOH . L 5 HOH A 6 1306 12 HOH HOH . L 5 HOH A 7 1307 1 HOH HOH . L 5 HOH A 8 1308 17 HOH HOH . L 5 HOH A 9 1309 8 HOH HOH . L 5 HOH A 10 1310 9 HOH HOH . L 5 HOH A 11 1311 6 HOH HOH . L 5 HOH A 12 1312 7 HOH HOH . L 5 HOH A 13 1313 11 HOH HOH . M 5 HOH B 1 1301 4 HOH HOH . M 5 HOH B 2 1302 13 HOH HOH . M 5 HOH B 3 1303 15 HOH HOH . M 5 HOH B 4 1304 3 HOH HOH . M 5 HOH B 5 1305 14 HOH HOH . M 5 HOH B 6 1306 19 HOH HOH . M 5 HOH B 7 1307 20 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C13 97Y . . . C 2 22.053 32.351 30.403 1 95.87 ? C13 97Y 1201 A 1 HETATM 2 C C15 97Y . . . C 2 22.803 32.681 32.792 1 99.01 ? C15 97Y 1201 A 1 HETATM 3 C C17 97Y . . . C 2 21.042 32.971 29.401 1 97.48 ? C17 97Y 1201 A 1 HETATM 4 C C20 97Y . . . C 2 22.145 29.95 29.39 1 87.08 ? C20 97Y 1201 A 1 HETATM 5 C C21 97Y . . . C 2 22.279 23.682 24.92 1 92.82 ? C21 97Y 1201 A 1 HETATM 6 C C22 97Y . . . C 2 22.173 25.783 26.449 1 85.2 ? C22 97Y 1201 A 1 HETATM 7 C C24 97Y . . . C 2 22.983 29.334 27.24 1 86.65 ? C24 97Y 1201 A 1 HETATM 8 C C26 97Y . . . C 2 19.665 32.823 29.595 1 95.49 ? C26 97Y 1201 A 1 HETATM 9 C C28 97Y . . . C 2 22.844 30.309 28.232 1 86.81 ? C28 97Y 1201 A 1 HETATM 10 F F01 97Y . . . C 2 22.222 23.535 23.559 1 94.33 ? F01 97Y 1201 A 1 HETATM 11 F F02 97Y . . . C 2 23.294 22.904 25.394 1 93.63 ? F02 97Y 1201 A 1 HETATM 12 F F03 97Y . . . C 2 21.102 23.296 25.509 1 92.93 ? F03 97Y 1201 A 1 HETATM 13 O O04 97Y . . . C 2 18.63 35.483 25.759 1 106.9 ? O04 97Y 1201 A 1 HETATM 14 O O05 97Y . . . C 2 13.199 34.241 26.74 1 106.8 ? O05 97Y 1201 A 1 HETATM 15 O O06 97Y . . . C 2 12.821 34.095 24.594 1 109.38 -1 O06 97Y 1201 A 1 HETATM 16 N N07 97Y . . . C 2 22.619 27.026 26.38 1 85.86 ? N07 97Y 1201 A 1 HETATM 17 N N08 97Y . . . C 2 21.914 30.882 30.49 1 91.11 ? N08 97Y 1201 A 1 HETATM 18 N N09 97Y . . . C 2 23.218 26.027 24.558 1 89.17 ? N09 97Y 1201 A 1 HETATM 19 N N10 97Y . . . C 2 21.836 27.744 28.552 1 83.02 ? N10 97Y 1201 A 1 HETATM 20 N N11 97Y . . . C 2 16.802 34.794 26.971 1 104.88 ? N11 97Y 1201 A 1 HETATM 21 C C12 97Y . . . C 2 21.756 32.921 31.738 1 97.51 ? C12 97Y 1201 A 1 HETATM 22 C C14 97Y . . . C 2 22.688 34.139 33.191 1 100.95 ? C14 97Y 1201 A 1 HETATM 23 C C16 97Y . . . C 2 22.027 34.404 31.863 1 99.89 ? C16 97Y 1201 A 1 HETATM 24 C C18 97Y . . . C 2 22.559 25.14 25.283 1 88.91 ? C18 97Y 1201 A 1 HETATM 25 C C19 97Y . . . C 2 22.454 28.05 27.414 1 85.06 ? C19 97Y 1201 A 1 HETATM 26 C C23 97Y . . . C 2 23.258 27.165 25.226 1 88.58 ? C23 97Y 1201 A 1 HETATM 27 C C25 97Y . . . C 2 21.514 33.769 28.357 1 101.15 ? C25 97Y 1201 A 1 HETATM 28 C C27 97Y . . . C 2 21.669 28.645 29.513 1 84.01 ? C27 97Y 1201 A 1 HETATM 29 C C29 97Y . . . C 2 21.758 34.402 34.387 1 100.2 ? C29 97Y 1201 A 1 HETATM 30 C C30 97Y . . . C 2 24.051 34.813 33.32 1 103.57 ? C30 97Y 1201 A 1 HETATM 31 C C31 97Y . . . C 2 19.232 34.198 27.658 1 101.44 ? C31 97Y 1201 A 1 HETATM 32 C C32 97Y . . . C 2 20.611 34.375 27.483 1 102.58 ? C32 97Y 1201 A 1 HETATM 33 C C33 97Y . . . C 2 18.763 33.43 28.726 1 96.94 ? C33 97Y 1201 A 1 HETATM 34 C C34 97Y . . . C 2 18.233 34.877 26.705 1 104.62 ? C34 97Y 1201 A 1 HETATM 35 C C35 97Y . . . C 2 15.829 35.441 26.107 1 107.71 ? C35 97Y 1201 A 1 HETATM 36 C C36 97Y . . . C 2 15.119 34.412 25.24 1 108.75 ? C36 97Y 1201 A 1 HETATM 37 C C37 97Y . . . C 2 13.627 34.247 25.55 1 108.54 ? C37 97Y 1201 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 37 #