data_5VEW
#
_model_server_result.job_id            NIeSNzT1v7mk1P2gi6dUVg 
_model_server_result.datetime_utc      '2024-11-22 18:03:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5vew 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1202}' 
#
_entry.id    5VEW 
#
_exptl.entry_id    5VEW 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              356.54 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90.54 
_cell.angle_beta          90.18 
_cell.angle_gamma         107.73 
_cell.entry_id            5VEW 
_cell.length_a            64.77 
_cell.length_b            66.43 
_cell.length_c            83.44 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5VEW 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 software_defined_assembly 1 
PISA monomeric 1 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,L 1 1 
B,G,H,I,J,K,M 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
? 3 G N N 
? 3 I N N 
? 3 J N N 
? 3 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 93 A CYS 226 1_555 A SG CYS 320 A CYS 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf2 A SG CYS 341 A CYS 317 1_555 A SG CYS 385 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
disulf ? disulf3 B SG CYS 93 B CYS 226 1_555 B SG CYS 320 B CYS 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf4 B SG CYS 341 B CYS 317 1_555 B SG CYS 385 B CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? 
covale ? covale1 A C LEU 99 A LEU 232 1_555 A N CSD 100 A CSD 233 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.36 ? 
covale ? covale2 A C CSD 100 A CSD 233 1_555 A N GLN 101 A GLN 234 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? 
covale ? covale3 B C LEU 99 B LEU 232 1_555 B N CSD 100 B CSD 233 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.36 ? 
covale ? covale4 B C CSD 100 B CSD 233 1_555 B N GLN 101 B GLN 234 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? 
#
_chem_comp.formula           'C21 H40 O4' 
_chem_comp.formula_weight    356.54 
_chem_comp.id                OLC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     1-Oleoyl-R-glycerol 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C18 C17 OLC sing 373 n n 
C10 C9 OLC doub 374 n n 
C10 C11 OLC sing 375 n n 
C9 C8 OLC sing 376 n n 
C17 C16 OLC sing 377 z n 
C11 C12 OLC sing 378 n n 
C8 C7 OLC sing 379 n n 
C24 C22 OLC sing 380 n n 
C24 O25 OLC sing 381 n n 
C16 C15 OLC sing 382 n n 
C12 C13 OLC sing 383 n n 
C7 C6 OLC sing 384 n n 
C15 C14 OLC sing 385 n n 
C13 C14 OLC sing 386 n n 
C6 C5 OLC sing 387 n n 
C5 C4 OLC sing 388 n n 
C4 C3 OLC sing 389 n n 
C3 C2 OLC sing 390 n n 
C2 C1 OLC sing 391 n n 
C21 C22 OLC sing 392 n n 
C21 O20 OLC sing 393 n n 
C1 O19 OLC doub 394 n n 
C1 O20 OLC sing 395 n n 
C22 O23 OLC sing 396 n n 
C18 H18 OLC sing 397 n n 
C18 H18A OLC sing 398 n n 
C18 H18B OLC sing 399 n n 
C10 H10 OLC sing 400 n n 
C9 H9 OLC sing 401 n n 
C17 H17 OLC sing 402 n n 
C17 H17A OLC sing 403 n n 
C11 H11 OLC sing 404 n n 
C11 H11A OLC sing 405 n n 
C8 H8 OLC sing 406 n n 
C8 H8A OLC sing 407 n n 
C24 H24 OLC sing 408 n n 
C24 H24A OLC sing 409 n n 
C16 H16 OLC sing 410 n n 
C16 H16A OLC sing 411 n n 
C12 H12 OLC sing 412 n n 
C12 H12A OLC sing 413 n n 
C7 H7 OLC sing 414 n n 
C7 H7A OLC sing 415 n n 
C15 H15 OLC sing 416 n n 
C15 H15A OLC sing 417 n n 
C13 H13 OLC sing 418 n n 
C13 H13A OLC sing 419 n n 
C6 H6 OLC sing 420 n n 
C6 H6A OLC sing 421 n n 
C14 H14 OLC sing 422 n n 
C14 H14A OLC sing 423 n n 
C5 H5 OLC sing 424 n n 
C5 H5A OLC sing 425 n n 
C4 H4 OLC sing 426 n n 
C4 H4A OLC sing 427 n n 
C3 H3 OLC sing 428 n n 
C3 H3A OLC sing 429 n n 
C2 H2 OLC sing 430 n n 
C2 H2A OLC sing 431 n n 
C21 H21 OLC sing 432 n n 
C21 H21A OLC sing 433 n n 
C22 H22 OLC sing 434 n n 
O25 HO25 OLC sing 435 n n 
O23 HO23 OLC sing 436 n n 
#
_atom_sites.entry_id                     5VEW 
_atom_sites.fract_transf_matrix[1][1]    0.015439 
_atom_sites.fract_transf_matrix[1][2]    0.004936 
_atom_sites.fract_transf_matrix[1][3]    0.000102 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015804 
_atom_sites.fract_transf_matrix[2][3]    0.000172 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011985 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 97Y A 1 1201 1201 97Y LIG . 
D 3 OLC A 1 1202 1302 OLC OLC . 
E 3 OLC A 1 1203 1304 OLC OLC . 
F 4 OLA A 1 1204 1309 OLA OLA . 
G 3 OLC B 1 1201 1303 OLC OLC . 
H 2 97Y B 1 1202 1201 97Y LIG . 
I 3 OLC B 1 1203 1305 OLC OLC . 
J 3 OLC B 1 1204 1306 OLC OLC . 
K 3 OLC B 1 1205 1307 OLC OLC . 
L 5 HOH A 1 1301 2 HOH HOH . 
L 5 HOH A 2 1302 16 HOH HOH . 
L 5 HOH A 3 1303 18 HOH HOH . 
L 5 HOH A 4 1304 5 HOH HOH . 
L 5 HOH A 5 1305 10 HOH HOH . 
L 5 HOH A 6 1306 12 HOH HOH . 
L 5 HOH A 7 1307 1 HOH HOH . 
L 5 HOH A 8 1308 17 HOH HOH . 
L 5 HOH A 9 1309 8 HOH HOH . 
L 5 HOH A 10 1310 9 HOH HOH . 
L 5 HOH A 11 1311 6 HOH HOH . 
L 5 HOH A 12 1312 7 HOH HOH . 
L 5 HOH A 13 1313 11 HOH HOH . 
M 5 HOH B 1 1301 4 HOH HOH . 
M 5 HOH B 2 1302 13 HOH HOH . 
M 5 HOH B 3 1303 15 HOH HOH . 
M 5 HOH B 4 1304 3 HOH HOH . 
M 5 HOH B 5 1305 14 HOH HOH . 
M 5 HOH B 6 1306 19 HOH HOH . 
M 5 HOH B 7 1307 20 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C18 OLC . . . D 3 -1.688 46.062 32.096 1 116.2 ? C18 OLC 1202 A 1 
HETATM 2 C C10 OLC . . . D 3 -0.985 40.536 38.839 1 113.32 ? C10 OLC 1202 A 1 
HETATM 3 C C9 OLC . . . D 3 -1.762 39.73 38.096 1 114.41 ? C9 OLC 1202 A 1 
HETATM 4 C C17 OLC . . . D 3 -1.651 45.277 33.389 1 114.88 ? C17 OLC 1202 A 1 
HETATM 5 C C11 OLC . . . D 3 0.105 41.425 38.266 1 112.68 ? C11 OLC 1202 A 1 
HETATM 6 C C8 OLC . . . D 3 -1.687 39.623 36.578 1 115.24 ? C8 OLC 1202 A 1 
HETATM 7 C C24 OLC . . . D 3 -6.221 32.266 28.672 1 111.47 ? C24 OLC 1202 A 1 
HETATM 8 C C16 OLC . . . D 3 -0.752 45.954 34.419 1 115.76 ? C16 OLC 1202 A 1 
HETATM 9 C C12 OLC . . . D 3 -0.379 42.856 38.053 1 113.55 ? C12 OLC 1202 A 1 
HETATM 10 C C7 OLC . . . D 3 -1.135 38.27 36.114 1 113.83 ? C7 OLC 1202 A 1 
HETATM 11 C C15 OLC . . . D 3 -1.075 45.487 35.832 1 114.87 ? C15 OLC 1202 A 1 
HETATM 12 C C13 OLC . . . D 3 -0.227 43.252 36.588 1 112.17 ? C13 OLC 1202 A 1 
HETATM 13 C C6 OLC . . . D 3 -2.155 37.121 36.153 1 113.36 ? C6 OLC 1202 A 1 
HETATM 14 C C14 OLC . . . D 3 0.099 44.732 36.44 1 113.41 ? C14 OLC 1202 A 1 
HETATM 15 C C5 OLC . . . D 3 -3.168 37.134 35.003 1 113.71 ? C5 OLC 1202 A 1 
HETATM 16 C C4 OLC . . . D 3 -2.686 36.431 33.734 1 112.02 ? C4 OLC 1202 A 1 
HETATM 17 C C3 OLC . . . D 3 -3.134 34.974 33.657 1 110.65 ? C3 OLC 1202 A 1 
HETATM 18 C C2 OLC . . . D 3 -4.353 34.814 32.748 1 111.52 ? C2 OLC 1202 A 1 
HETATM 19 C C21 OLC . . . D 3 -4.46 32.878 30.373 1 110.14 ? C21 OLC 1202 A 1 
HETATM 20 C C1 OLC . . . D 3 -4.931 33.405 32.819 1 110.41 ? C1 OLC 1202 A 1 
HETATM 21 C C22 OLC . . . D 3 -5.411 33.399 29.293 1 111.65 ? C22 OLC 1202 A 1 
HETATM 22 O O19 OLC . . . D 3 -5.28 32.919 33.894 1 109.69 ? O19 OLC 1202 A 1 
HETATM 23 O O25 OLC . . . D 3 -6.267 32.441 27.25 1 112.17 ? O25 OLC 1202 A 1 
HETATM 24 O O23 OLC . . . D 3 -6.275 34.42 29.805 1 113.26 ? O23 OLC 1202 A 1 
HETATM 25 O O20 OLC . . . D 3 -5.131 32.607 31.608 1 109.62 ? O20 OLC 1202 A 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           260 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           25 
#