data_5VEW # _model_server_result.job_id cdz181D3bBpmPqz-NVySYg _model_server_result.datetime_utc '2025-02-16 23:00:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5vew # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1204}' # _entry.id 5VEW # _exptl.entry_id 5VEW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 282.461 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'OLEIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90.54 _cell.angle_beta 90.18 _cell.angle_gamma 107.73 _cell.entry_id 5VEW _cell.length_a 64.77 _cell.length_b 66.43 _cell.length_c 83.44 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5VEW _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 software_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,L 1 1 B,G,H,I,J,K,M 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 93 A CYS 226 1_555 A SG CYS 320 A CYS 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf2 A SG CYS 341 A CYS 317 1_555 A SG CYS 385 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf3 B SG CYS 93 B CYS 226 1_555 B SG CYS 320 B CYS 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf4 B SG CYS 341 B CYS 317 1_555 B SG CYS 385 B CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? covale ? covale1 A C LEU 99 A LEU 232 1_555 A N CSD 100 A CSD 233 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.36 ? covale ? covale2 A C CSD 100 A CSD 233 1_555 A N GLN 101 A GLN 234 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? covale ? covale3 B C LEU 99 B LEU 232 1_555 B N CSD 100 B CSD 233 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.36 ? covale ? covale4 B C CSD 100 B CSD 233 1_555 B N GLN 101 B GLN 234 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? # _chem_comp.formula 'C18 H34 O2' _chem_comp.formula_weight 282.461 _chem_comp.id OLA _chem_comp.mon_nstd_flag . _chem_comp.name 'OLEIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 OLA doub 320 n n C1 O2 OLA sing 321 n n C1 C2 OLA sing 322 n n O2 HO2 OLA sing 323 n n C2 C3 OLA sing 324 n n C2 H21 OLA sing 325 n n C2 H22 OLA sing 326 n n C3 C4 OLA sing 327 n n C3 H31 OLA sing 328 n n C3 H32 OLA sing 329 n n C4 C5 OLA sing 330 n n C4 H41 OLA sing 331 n n C4 H42 OLA sing 332 n n C5 C6 OLA sing 333 n n C5 H51 OLA sing 334 n n C5 H52 OLA sing 335 n n C6 C7 OLA sing 336 n n C6 H61 OLA sing 337 n n C6 H62 OLA sing 338 n n C7 C8 OLA sing 339 n n C7 H71 OLA sing 340 n n C7 H72 OLA sing 341 n n C8 C9 OLA sing 342 n n C8 H81 OLA sing 343 n n C8 H82 OLA sing 344 n n C9 C10 OLA doub 345 z n C9 H9 OLA sing 346 n n C10 C11 OLA sing 347 n n C10 H10 OLA sing 348 n n C11 C12 OLA sing 349 n n C11 H111 OLA sing 350 n n C11 H112 OLA sing 351 n n C12 C13 OLA sing 352 n n C12 H121 OLA sing 353 n n C12 H122 OLA sing 354 n n C13 C14 OLA sing 355 n n C13 H131 OLA sing 356 n n C13 H132 OLA sing 357 n n C14 C15 OLA sing 358 n n C14 H141 OLA sing 359 n n C14 H142 OLA sing 360 n n C15 C16 OLA sing 361 n n C15 H151 OLA sing 362 n n C15 H152 OLA sing 363 n n C16 C17 OLA sing 364 n n C16 H161 OLA sing 365 n n C16 H162 OLA sing 366 n n C17 C18 OLA sing 367 n n C17 H171 OLA sing 368 n n C17 H172 OLA sing 369 n n C18 H181 OLA sing 370 n n C18 H182 OLA sing 371 n n C18 H183 OLA sing 372 n n # _atom_sites.entry_id 5VEW _atom_sites.fract_transf_matrix[1][1] 0.015439 _atom_sites.fract_transf_matrix[1][2] 0.004936 _atom_sites.fract_transf_matrix[1][3] 0.000102 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015804 _atom_sites.fract_transf_matrix[2][3] 0.000172 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011985 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 97Y A 1 1201 1201 97Y LIG . D 3 OLC A 1 1202 1302 OLC OLC . E 3 OLC A 1 1203 1304 OLC OLC . F 4 OLA A 1 1204 1309 OLA OLA . G 3 OLC B 1 1201 1303 OLC OLC . H 2 97Y B 1 1202 1201 97Y LIG . I 3 OLC B 1 1203 1305 OLC OLC . J 3 OLC B 1 1204 1306 OLC OLC . K 3 OLC B 1 1205 1307 OLC OLC . L 5 HOH A 1 1301 2 HOH HOH . L 5 HOH A 2 1302 16 HOH HOH . L 5 HOH A 3 1303 18 HOH HOH . L 5 HOH A 4 1304 5 HOH HOH . L 5 HOH A 5 1305 10 HOH HOH . L 5 HOH A 6 1306 12 HOH HOH . L 5 HOH A 7 1307 1 HOH HOH . L 5 HOH A 8 1308 17 HOH HOH . L 5 HOH A 9 1309 8 HOH HOH . L 5 HOH A 10 1310 9 HOH HOH . L 5 HOH A 11 1311 6 HOH HOH . L 5 HOH A 12 1312 7 HOH HOH . L 5 HOH A 13 1313 11 HOH HOH . M 5 HOH B 1 1301 4 HOH HOH . M 5 HOH B 2 1302 13 HOH HOH . M 5 HOH B 3 1303 15 HOH HOH . M 5 HOH B 4 1304 3 HOH HOH . M 5 HOH B 5 1305 14 HOH HOH . M 5 HOH B 6 1306 19 HOH HOH . M 5 HOH B 7 1307 20 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 OLA . . . F 4 -7.843 39.815 26.607 1 133.46 ? C1 OLA 1204 A 1 HETATM 2 O O1 OLA . . . F 4 -8.692 40.701 26.37 1 135.56 ? O1 OLA 1204 A 1 HETATM 3 O O2 OLA . . . F 4 -8.181 38.614 26.535 1 131.78 ? O2 OLA 1204 A 1 HETATM 4 C C2 OLA . . . F 4 -6.429 40.188 26.976 1 133.21 ? C2 OLA 1204 A 1 HETATM 5 C C3 OLA . . . F 4 -6.301 40.268 28.493 1 133.01 ? C3 OLA 1204 A 1 HETATM 6 C C4 OLA . . . F 4 -5.494 41.493 28.903 1 134.23 ? C4 OLA 1204 A 1 HETATM 7 C C5 OLA . . . F 4 -6.382 42.533 29.575 1 136.41 ? C5 OLA 1204 A 1 HETATM 8 C C6 OLA . . . F 4 -5.7 43.111 30.808 1 136.99 ? C6 OLA 1204 A 1 HETATM 9 C C7 OLA . . . F 4 -6.335 42.58 32.087 1 137.23 ? C7 OLA 1204 A 1 HETATM 10 C C8 OLA . . . F 4 -5.452 41.518 32.732 1 135.4 ? C8 OLA 1204 A 1 HETATM 11 C C9 OLA . . . F 4 -6.255 40.261 32.97 1 134.55 ? C9 OLA 1204 A 1 HETATM 12 C C10 OLA . . . F 4 -5.821 39.349 33.837 1 133.48 ? C10 OLA 1204 A 1 HETATM 13 C C11 OLA . . . F 4 -6.341 39.328 35.257 1 134.73 ? C11 OLA 1204 A 1 HETATM 14 C C12 OLA . . . F 4 -5.308 39.949 36.191 1 135.45 ? C12 OLA 1204 A 1 HETATM 15 C C13 OLA . . . F 4 -5.852 41.19 36.89 1 138.48 ? C13 OLA 1204 A 1 HETATM 16 C C14 OLA . . . F 4 -5.173 42.467 36.396 1 139.63 ? C14 OLA 1204 A 1 HETATM 17 C C15 OLA . . . F 4 -4.116 42.966 37.377 1 139.31 ? C15 OLA 1204 A 1 HETATM 18 C C16 OLA . . . F 4 -4.656 44.063 38.292 1 141.25 ? C16 OLA 1204 A 1 HETATM 19 C C17 OLA . . . F 4 -3.692 44.341 39.442 1 140.61 ? C17 OLA 1204 A 1 HETATM 20 C C18 OLA . . . F 4 -4.197 43.742 40.75 1 139.79 ? C18 OLA 1204 A 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 333 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 20 #