data_5VEX # _model_server_result.job_id Onc0sXEK_Lln0j0DX8fkWQ _model_server_result.datetime_utc '2024-11-22 12:32:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5vex # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1201}' # _entry.id 5VEX # _exptl.entry_id 5VEX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 573.666 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-{[(4-cyclohexylphenyl){[3-(methylsulfonyl)phenyl]carbamoyl}amino]methyl}-N-(1H-tetrazol-5-yl)benzamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 91.55 _cell.angle_beta 89.88 _cell.angle_gamma 107.56 _cell.entry_id 5VEX _cell.length_a 64.81 _cell.length_b 67.51 _cell.length_c 83.66 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5VEX _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 software_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C 1 1 B,D 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 93 A CYS 226 1_555 A SG CYS 320 A CYS 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf2 A SG CYS 341 A CYS 317 1_555 A SG CYS 385 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf3 B SG CYS 93 B CYS 226 1_555 B SG CYS 320 B CYS 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf4 B SG CYS 341 B CYS 317 1_555 B SG CYS 385 B CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? covale ? covale1 A C LEU 99 A LEU 232 1_555 A N CSD 100 A CSD 233 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.356 ? covale ? covale2 A C CSD 100 A CSD 233 1_555 A N GLN 101 A GLN 234 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.356 ? covale ? covale3 B C LEU 99 B LEU 232 1_555 B N CSD 100 B CSD 233 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.356 ? covale ? covale4 B C CSD 100 B CSD 233 1_555 B N GLN 101 B GLN 234 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.356 ? # _chem_comp.formula 'C29 H31 N7 O4 S' _chem_comp.formula_weight 573.666 _chem_comp.id 97V _chem_comp.mon_nstd_flag . _chem_comp.name 4-{[(4-cyclohexylphenyl){[3-(methylsulfonyl)phenyl]carbamoyl}amino]methyl}-N-(1H-tetrazol-5-yl)benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CBJ CBK 97V sing 1 n n CBJ CBI 97V sing 2 n n CBK CBL 97V sing 3 n n CBI CBH 97V sing 4 n n CBL CBG 97V sing 5 n n CBH CBG 97V sing 6 n n CBG CBF 97V sing 7 n n CBF CBM 97V doub 8 n y CBF CBE 97V sing 9 n y CBM CBN 97V sing 10 n y CBE CBD 97V doub 11 n y CBN CBC 97V doub 12 n y CBD CBC 97V sing 13 n y CBC NAM 97V sing 14 n n CAH CAG 97V doub 15 n y CAH CAI 97V sing 16 n y NAJ CAI 97V sing 17 n n NAJ CAK 97V sing 18 n n NAM CAK 97V sing 19 n n NAM CAN 97V sing 20 n n CAG CAF 97V sing 21 n y CAI CBO 97V doub 22 n y CAK OAL 97V doub 23 n n CAN CAO 97V sing 24 n n CAP CAO 97V doub 25 n y CAP CAQ 97V sing 26 n y CAF CAE 97V doub 27 n y CAO CBB 97V sing 28 n y CAQ CAR 97V doub 29 n y CBO CAE 97V sing 30 n y CAE SAB 97V sing 31 n n CBB CBA 97V doub 32 n y CAR CBA 97V sing 33 n y CAR CAS 97V sing 34 n n NAU CAS 97V sing 35 n n NAU CAV 97V sing 36 n n NAZ CAV 97V doub 37 n y NAZ NAY 97V sing 38 n y CAS OAT 97V doub 39 n n SAB CAA 97V sing 40 n n SAB OAC 97V doub 41 n n SAB OAD 97V doub 42 n n CAV NAW 97V sing 43 n y NAY NAX 97V doub 44 n y NAW NAX 97V sing 45 n y CAA H1 97V sing 46 n n CAA H2 97V sing 47 n n CAA H3 97V sing 48 n n CAF H4 97V sing 49 n n CAG H5 97V sing 50 n n CAH H6 97V sing 51 n n CAN H7 97V sing 52 n n CAN H8 97V sing 53 n n CAP H9 97V sing 54 n n CAQ H10 97V sing 55 n n NAJ H11 97V sing 56 n n NAU H12 97V sing 57 n n NAW H13 97V sing 58 n n CBA H14 97V sing 59 n n CBB H15 97V sing 60 n n CBD H16 97V sing 61 n n CBE H17 97V sing 62 n n CBG H18 97V sing 63 n n CBH H19 97V sing 64 n n CBH H20 97V sing 65 n n CBI H21 97V sing 66 n n CBI H22 97V sing 67 n n CBJ H23 97V sing 68 n n CBJ H24 97V sing 69 n n CBK H25 97V sing 70 n n CBK H26 97V sing 71 n n CBL H27 97V sing 72 n n CBL H28 97V sing 73 n n CBM H29 97V sing 74 n n CBN H30 97V sing 75 n n CBO H31 97V sing 76 n n # _atom_sites.entry_id 5VEX _atom_sites.fract_transf_matrix[1][1] 0.01543 _atom_sites.fract_transf_matrix[1][2] 0.004883 _atom_sites.fract_transf_matrix[1][3] 0.000103 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015537 _atom_sites.fract_transf_matrix[2][3] 0.000431 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011958 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 97V A 1 1201 1201 97V DRG . D 2 97V B 1 1201 1201 97V DRG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA 97V . . . C 2 23.504 -20.224 -27.276 1 128.81 ? CAA 97V 1201 A 1 HETATM 2 C CAE 97V . . . C 2 22.109 -22.064 -29.16 1 127.99 ? CAE 97V 1201 A 1 HETATM 3 C CAF 97V . . . C 2 21.66 -21.071 -30.029 1 126.94 ? CAF 97V 1201 A 1 HETATM 4 C CAG 97V . . . C 2 21.445 -21.362 -31.373 1 126.62 ? CAG 97V 1201 A 1 HETATM 5 C CAH 97V . . . C 2 21.676 -22.652 -31.853 1 128.12 ? CAH 97V 1201 A 1 HETATM 6 C CAI 97V . . . C 2 22.102 -23.668 -30.997 1 129.94 ? CAI 97V 1201 A 1 HETATM 7 C CAK 97V . . . C 2 22.594 -26.231 -30.819 1 136.22 ? CAK 97V 1201 A 1 HETATM 8 C CAN 97V . . . C 2 23.123 -28.721 -30.737 1 144.71 ? CAN 97V 1201 A 1 HETATM 9 C CAO 97V . . . C 2 21.909 -29.135 -29.912 1 145.21 ? CAO 97V 1201 A 1 HETATM 10 C CAP 97V . . . C 2 20.65 -29.233 -30.502 1 143.9 ? CAP 97V 1201 A 1 HETATM 11 C CAQ 97V . . . C 2 19.561 -29.603 -29.724 1 144.13 ? CAQ 97V 1201 A 1 HETATM 12 C CAR 97V . . . C 2 19.74 -29.868 -28.365 1 146.46 ? CAR 97V 1201 A 1 HETATM 13 C CAS 97V . . . C 2 18.538 -30.264 -27.512 1 147.81 ? CAS 97V 1201 A 1 HETATM 14 C CAV 97V . . . C 2 16.01 -30.129 -27.203 1 147.86 ? CAV 97V 1201 A 1 HETATM 15 N NAJ 97V . . . C 2 22.365 -24.997 -31.575 1 132.82 ? NAJ 97V 1201 A 1 HETATM 16 N NAM 97V . . . C 2 22.866 -27.51 -31.512 1 140.7 ? NAM 97V 1201 A 1 HETATM 17 N NAU 97V . . . C 2 17.22 -29.811 -27.931 1 146.94 ? NAU 97V 1201 A 1 HETATM 18 N NAW 97V . . . C 2 15.904 -30.802 -26.022 1 149.91 ? NAW 97V 1201 A 1 HETATM 19 N NAX 97V . . . C 2 14.598 -30.872 -25.713 1 149.9 ? NAX 97V 1201 A 1 HETATM 20 N NAY 97V . . . C 2 13.898 -30.274 -26.65 1 148.2 ? NAY 97V 1201 A 1 HETATM 21 N NAZ 97V . . . C 2 14.745 -29.805 -27.584 1 147.15 ? NAZ 97V 1201 A 1 HETATM 22 O OAC 97V . . . C 2 23.12 -22.959 -26.656 1 130.4 -1 OAC 97V 1201 A 1 HETATM 23 O OAD 97V . . . C 2 20.972 -21.325 -26.64 1 124.92 -1 OAD 97V 1201 A 1 HETATM 24 O OAL 97V . . . C 2 22.55 -26.206 -29.631 1 135.44 ? OAL 97V 1201 A 1 HETATM 25 O OAT 97V . . . C 2 18.691 -30.92 -26.531 1 149.62 ? OAT 97V 1201 A 1 HETATM 26 S SAB 97V . . . C 2 22.401 -21.666 -27.4 1 127.97 ? SAB 97V 1201 A 1 HETATM 27 C CBA 97V . . . C 2 21 -29.764 -27.781 1 147.47 ? CBA 97V 1201 A 1 HETATM 28 C CBB 97V . . . C 2 22.088 -29.389 -28.556 1 147.39 ? CBB 97V 1201 A 1 HETATM 29 C CBC 97V . . . C 2 22.973 -27.642 -32.968 1 141.26 ? CBC 97V 1201 A 1 HETATM 30 C CBD 97V . . . C 2 22.17 -28.571 -33.646 1 141.06 ? CBD 97V 1201 A 1 HETATM 31 C CBE 97V . . . C 2 22.321 -28.767 -35.021 1 141.67 ? CBE 97V 1201 A 1 HETATM 32 C CBF 97V . . . C 2 23.303 -28.066 -35.736 1 142.75 ? CBF 97V 1201 A 1 HETATM 33 C CBG 97V . . . C 2 23.462 -28.263 -37.276 1 143.62 ? CBG 97V 1201 A 1 HETATM 34 C CBH 97V . . . C 2 24.95 -28.235 -37.695 1 146.4 ? CBH 97V 1201 A 1 HETATM 35 C CBI 97V . . . C 2 25.17 -28.514 -39.191 1 148.07 ? CBI 97V 1201 A 1 HETATM 36 C CBJ 97V . . . C 2 24.436 -29.77 -39.698 1 148.68 ? CBJ 97V 1201 A 1 HETATM 37 C CBK 97V . . . C 2 22.957 -29.829 -39.265 1 145.99 ? CBK 97V 1201 A 1 HETATM 38 C CBL 97V . . . C 2 22.746 -29.541 -37.768 1 144.5 ? CBL 97V 1201 A 1 HETATM 39 C CBM 97V . . . C 2 24.117 -27.152 -35.047 1 143.16 ? CBM 97V 1201 A 1 HETATM 40 C CBN 97V . . . C 2 23.982 -26.972 -33.667 1 142.55 ? CBN 97V 1201 A 1 HETATM 41 C CBO 97V . . . C 2 22.349 -23.356 -29.651 1 129.48 ? CBO 97V 1201 A 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 41 #