data_5VEX # _model_server_result.job_id rQfSapMc6DpNmWk7lNbU-w _model_server_result.datetime_utc '2024-10-12 19:27:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5vex # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1201}' # _entry.id 5VEX # _exptl.entry_id 5VEX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 573.666 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-{[(4-cyclohexylphenyl){[3-(methylsulfonyl)phenyl]carbamoyl}amino]methyl}-N-(1H-tetrazol-5-yl)benzamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 91.55 _cell.angle_beta 89.88 _cell.angle_gamma 107.56 _cell.entry_id 5VEX _cell.length_a 64.81 _cell.length_b 67.51 _cell.length_c 83.66 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5VEX _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 software_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C 1 1 B,D 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 93 A CYS 226 1_555 A SG CYS 320 A CYS 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf2 A SG CYS 341 A CYS 317 1_555 A SG CYS 385 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf3 B SG CYS 93 B CYS 226 1_555 B SG CYS 320 B CYS 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf4 B SG CYS 341 B CYS 317 1_555 B SG CYS 385 B CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? covale ? covale1 A C LEU 99 A LEU 232 1_555 A N CSD 100 A CSD 233 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.356 ? covale ? covale2 A C CSD 100 A CSD 233 1_555 A N GLN 101 A GLN 234 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.356 ? covale ? covale3 B C LEU 99 B LEU 232 1_555 B N CSD 100 B CSD 233 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.356 ? covale ? covale4 B C CSD 100 B CSD 233 1_555 B N GLN 101 B GLN 234 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.356 ? # _chem_comp.formula 'C29 H31 N7 O4 S' _chem_comp.formula_weight 573.666 _chem_comp.id 97V _chem_comp.mon_nstd_flag . _chem_comp.name 4-{[(4-cyclohexylphenyl){[3-(methylsulfonyl)phenyl]carbamoyl}amino]methyl}-N-(1H-tetrazol-5-yl)benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CBJ CBK 97V sing 1 n n CBJ CBI 97V sing 2 n n CBK CBL 97V sing 3 n n CBI CBH 97V sing 4 n n CBL CBG 97V sing 5 n n CBH CBG 97V sing 6 n n CBG CBF 97V sing 7 n n CBF CBM 97V doub 8 n y CBF CBE 97V sing 9 n y CBM CBN 97V sing 10 n y CBE CBD 97V doub 11 n y CBN CBC 97V doub 12 n y CBD CBC 97V sing 13 n y CBC NAM 97V sing 14 n n CAH CAG 97V doub 15 n y CAH CAI 97V sing 16 n y NAJ CAI 97V sing 17 n n NAJ CAK 97V sing 18 n n NAM CAK 97V sing 19 n n NAM CAN 97V sing 20 n n CAG CAF 97V sing 21 n y CAI CBO 97V doub 22 n y CAK OAL 97V doub 23 n n CAN CAO 97V sing 24 n n CAP CAO 97V doub 25 n y CAP CAQ 97V sing 26 n y CAF CAE 97V doub 27 n y CAO CBB 97V sing 28 n y CAQ CAR 97V doub 29 n y CBO CAE 97V sing 30 n y CAE SAB 97V sing 31 n n CBB CBA 97V doub 32 n y CAR CBA 97V sing 33 n y CAR CAS 97V sing 34 n n NAU CAS 97V sing 35 n n NAU CAV 97V sing 36 n n NAZ CAV 97V doub 37 n y NAZ NAY 97V sing 38 n y CAS OAT 97V doub 39 n n SAB CAA 97V sing 40 n n SAB OAC 97V doub 41 n n SAB OAD 97V doub 42 n n CAV NAW 97V sing 43 n y NAY NAX 97V doub 44 n y NAW NAX 97V sing 45 n y CAA H1 97V sing 46 n n CAA H2 97V sing 47 n n CAA H3 97V sing 48 n n CAF H4 97V sing 49 n n CAG H5 97V sing 50 n n CAH H6 97V sing 51 n n CAN H7 97V sing 52 n n CAN H8 97V sing 53 n n CAP H9 97V sing 54 n n CAQ H10 97V sing 55 n n NAJ H11 97V sing 56 n n NAU H12 97V sing 57 n n NAW H13 97V sing 58 n n CBA H14 97V sing 59 n n CBB H15 97V sing 60 n n CBD H16 97V sing 61 n n CBE H17 97V sing 62 n n CBG H18 97V sing 63 n n CBH H19 97V sing 64 n n CBH H20 97V sing 65 n n CBI H21 97V sing 66 n n CBI H22 97V sing 67 n n CBJ H23 97V sing 68 n n CBJ H24 97V sing 69 n n CBK H25 97V sing 70 n n CBK H26 97V sing 71 n n CBL H27 97V sing 72 n n CBL H28 97V sing 73 n n CBM H29 97V sing 74 n n CBN H30 97V sing 75 n n CBO H31 97V sing 76 n n # _atom_sites.entry_id 5VEX _atom_sites.fract_transf_matrix[1][1] 0.01543 _atom_sites.fract_transf_matrix[1][2] 0.004883 _atom_sites.fract_transf_matrix[1][3] 0.000103 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015537 _atom_sites.fract_transf_matrix[2][3] 0.000431 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011958 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 97V A 1 1201 1201 97V DRG . D 2 97V B 1 1201 1201 97V DRG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA 97V . . . D 2 53.57 -13.152 -58.728 1 124.17 ? CAA 97V 1201 B 1 HETATM 2 C CAE 97V . . . D 2 54.386 -11.173 -56.603 1 126.86 ? CAE 97V 1201 B 1 HETATM 3 C CAF 97V . . . D 2 54.119 -12.16 -55.653 1 126.04 ? CAF 97V 1201 B 1 HETATM 4 C CAG 97V . . . D 2 54.071 -11.841 -54.298 1 125.99 ? CAG 97V 1201 B 1 HETATM 5 C CAH 97V . . . D 2 54.291 -10.526 -53.885 1 127.37 ? CAH 97V 1201 B 1 HETATM 6 C CAI 97V . . . D 2 54.54 -9.517 -54.817 1 129.41 ? CAI 97V 1201 B 1 HETATM 7 C CAK 97V . . . D 2 54.933 -6.935 -55.093 1 137.74 ? CAK 97V 1201 B 1 HETATM 8 C CAN 97V . . . D 2 55.357 -4.418 -55.217 1 148.35 ? CAN 97V 1201 B 1 HETATM 9 C CAO 97V . . . D 2 54.085 -4.024 -55.97 1 149.77 ? CAO 97V 1201 B 1 HETATM 10 C CAP 97V . . . D 2 52.829 -4.123 -55.364 1 148.85 ? CAP 97V 1201 B 1 HETATM 11 C CAQ 97V . . . D 2 51.689 -3.768 -56.079 1 149.06 ? CAQ 97V 1201 B 1 HETATM 12 C CAR 97V . . . D 2 51.813 -3.302 -57.391 1 151.39 ? CAR 97V 1201 B 1 HETATM 13 C CAS 97V . . . D 2 50.565 -2.921 -58.19 1 152.8 ? CAS 97V 1201 B 1 HETATM 14 C CAV 97V . . . D 2 48.027 -3.076 -58.437 1 152.79 ? CAV 97V 1201 B 1 HETATM 15 N NAJ 97V . . . D 2 54.783 -8.16 -54.304 1 133.21 ? NAJ 97V 1201 B 1 HETATM 16 N NAM 97V . . . D 2 55.182 -5.636 -54.426 1 143.48 ? NAM 97V 1201 B 1 HETATM 17 N NAU 97V . . . D 2 49.258 -3.372 -57.725 1 151.91 ? NAU 97V 1201 B 1 HETATM 18 N NAW 97V . . . D 2 46.774 -3.47 -58.072 1 151.61 ? NAW 97V 1201 B 1 HETATM 19 N NAX 97V . . . D 2 45.913 -3.015 -58.999 1 152.31 ? NAX 97V 1201 B 1 HETATM 20 N NAY 97V . . . D 2 46.584 -2.374 -59.928 1 154.19 ? NAY 97V 1201 B 1 HETATM 21 N NAZ 97V . . . D 2 47.889 -2.39 -59.608 1 154.74 ? NAZ 97V 1201 B 1 HETATM 22 O OAC 97V . . . D 2 56.012 -11.742 -58.894 1 129.29 -1 OAC 97V 1201 B 1 HETATM 23 O OAD 97V . . . D 2 53.748 -10.389 -59.259 1 126.96 -1 OAD 97V 1201 B 1 HETATM 24 O OAL 97V . . . D 2 54.84 -6.983 -56.277 1 137.18 ? OAL 97V 1201 B 1 HETATM 25 O OAT 97V . . . D 2 50.675 -2.279 -59.186 1 154.71 ? OAT 97V 1201 B 1 HETATM 26 S SAB 97V . . . D 2 54.447 -11.596 -58.386 1 126.31 ? SAB 97V 1201 B 1 HETATM 27 C CBA 97V . . . D 2 53.071 -3.2 -57.987 1 152.35 ? CBA 97V 1201 B 1 HETATM 28 C CBB 97V . . . D 2 54.208 -3.57 -57.28 1 152.05 ? CBB 97V 1201 B 1 HETATM 29 C CBC 97V . . . D 2 55.343 -5.502 -52.974 1 144.24 ? CBC 97V 1201 B 1 HETATM 30 C CBD 97V . . . D 2 54.532 -4.622 -52.241 1 143.89 ? CBD 97V 1201 B 1 HETATM 31 C CBE 97V . . . D 2 54.735 -4.449 -50.867 1 144.47 ? CBE 97V 1201 B 1 HETATM 32 C CBF 97V . . . D 2 55.771 -5.131 -50.208 1 145.69 ? CBF 97V 1201 B 1 HETATM 33 C CBG 97V . . . D 2 55.995 -4.981 -48.669 1 146.71 ? CBG 97V 1201 B 1 HETATM 34 C CBH 97V . . . D 2 57.493 -5.09 -48.292 1 149.12 ? CBH 97V 1201 B 1 HETATM 35 C CBI 97V . . . D 2 57.763 -4.909 -46.79 1 150.04 ? CBI 97V 1201 B 1 HETATM 36 C CBJ 97V . . . D 2 57.097 -3.65 -46.207 1 150.84 ? CBJ 97V 1201 B 1 HETATM 37 C CBK 97V . . . D 2 55.608 -3.515 -46.588 1 148.79 ? CBK 97V 1201 B 1 HETATM 38 C CBL 97V . . . D 2 55.334 -3.711 -48.09 1 147.57 ? CBL 97V 1201 B 1 HETATM 39 C CBM 97V . . . D 2 56.583 -6 -50.953 1 146.1 ? CBM 97V 1201 B 1 HETATM 40 C CBN 97V . . . D 2 56.399 -6.152 -52.329 1 145.54 ? CBN 97V 1201 B 1 HETATM 41 C CBO 97V . . . D 2 54.608 -9.853 -56.178 1 128.56 ? CBO 97V 1201 B 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 41 #