data_5VFF # _model_server_result.job_id hmh7hI5WCJYBRmON9gLWSQ _model_server_result.datetime_utc '2025-01-07 10:54:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5vff # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 5VFF # _exptl.entry_id 5VFF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 207.2 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'LEAD (II) ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5VFF _cell.length_a 40.634 _cell.length_b 41.117 _cell.length_c 82.854 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5VFF _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 39 A ASP 309 1_555 B PB PB . A PB 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.596 ? metalc ? metalc2 A OD1 ASP 93 A ASP 363 1_555 B PB PB . A PB 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.209 ? metalc ? metalc3 A OD2 ASP 93 A ASP 363 1_555 B PB PB . A PB 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.581 ? metalc ? metalc4 A O TYR 94 A TYR 364 1_555 B PB PB . A PB 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.778 ? metalc ? metalc5 A OD1 ASP 95 A ASP 365 1_555 B PB PB . A PB 501 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.528 ? metalc ? metalc6 B PB PB . A PB 501 1_555 C O HOH . A HOH 631 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.919 ? metalc ? metalc7 B PB PB . A PB 501 1_555 C O HOH . A HOH 669 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? # _chem_comp.formula 'Pb 2' _chem_comp.formula_weight 207.2 _chem_comp.id PB _chem_comp.mon_nstd_flag . _chem_comp.name 'LEAD (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5VFF _atom_sites.fract_transf_matrix[1][1] 0.02461 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024321 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012069 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PB A 1 501 501 PB PB . C 3 HOH A 1 601 128 HOH HOH . C 3 HOH A 2 602 44 HOH HOH . C 3 HOH A 3 603 96 HOH HOH . C 3 HOH A 4 604 138 HOH HOH . C 3 HOH A 5 605 154 HOH HOH . C 3 HOH A 6 606 236 HOH HOH . C 3 HOH A 7 607 125 HOH HOH . C 3 HOH A 8 608 165 HOH HOH . C 3 HOH A 9 609 228 HOH HOH . C 3 HOH A 10 610 120 HOH HOH . C 3 HOH A 11 611 41 HOH HOH . C 3 HOH A 12 612 222 HOH HOH . C 3 HOH A 13 613 74 HOH HOH . C 3 HOH A 14 614 152 HOH HOH . C 3 HOH A 15 615 78 HOH HOH . C 3 HOH A 16 616 136 HOH HOH . C 3 HOH A 17 617 241 HOH HOH . C 3 HOH A 18 618 230 HOH HOH . C 3 HOH A 19 619 178 HOH HOH . C 3 HOH A 20 620 119 HOH HOH . C 3 HOH A 21 621 146 HOH HOH . C 3 HOH A 22 622 117 HOH HOH . C 3 HOH A 23 623 145 HOH HOH . C 3 HOH A 24 624 122 HOH HOH . C 3 HOH A 25 625 223 HOH HOH . C 3 HOH A 26 626 45 HOH HOH . C 3 HOH A 27 627 234 HOH HOH . C 3 HOH A 28 628 85 HOH HOH . C 3 HOH A 29 629 216 HOH HOH . C 3 HOH A 30 630 88 HOH HOH . C 3 HOH A 31 631 250 HOH HOH . C 3 HOH A 32 632 114 HOH HOH . C 3 HOH A 33 633 34 HOH HOH . C 3 HOH A 34 634 61 HOH HOH . C 3 HOH A 35 635 175 HOH HOH . C 3 HOH A 36 636 9 HOH HOH . C 3 HOH A 37 637 144 HOH HOH . C 3 HOH A 38 638 22 HOH HOH . C 3 HOH A 39 639 25 HOH HOH . C 3 HOH A 40 640 18 HOH HOH . C 3 HOH A 41 641 174 HOH HOH . C 3 HOH A 42 642 2 HOH HOH . C 3 HOH A 43 643 251 HOH HOH . C 3 HOH A 44 644 118 HOH HOH . C 3 HOH A 45 645 13 HOH HOH . C 3 HOH A 46 646 43 HOH HOH . C 3 HOH A 47 647 189 HOH HOH . C 3 HOH A 48 648 190 HOH HOH . C 3 HOH A 49 649 72 HOH HOH . C 3 HOH A 50 650 115 HOH HOH . C 3 HOH A 51 651 76 HOH HOH . C 3 HOH A 52 652 188 HOH HOH . C 3 HOH A 53 653 30 HOH HOH . C 3 HOH A 54 654 229 HOH HOH . C 3 HOH A 55 655 3 HOH HOH . C 3 HOH A 56 656 14 HOH HOH . C 3 HOH A 57 657 24 HOH HOH . C 3 HOH A 58 658 56 HOH HOH . C 3 HOH A 59 659 17 HOH HOH . C 3 HOH A 60 660 32 HOH HOH . C 3 HOH A 61 661 169 HOH HOH . C 3 HOH A 62 662 31 HOH HOH . C 3 HOH A 63 663 39 HOH HOH . C 3 HOH A 64 664 10 HOH HOH . C 3 HOH A 65 665 108 HOH HOH . C 3 HOH A 66 666 49 HOH HOH . C 3 HOH A 67 667 92 HOH HOH . C 3 HOH A 68 668 1 HOH HOH . C 3 HOH A 69 669 199 HOH HOH . C 3 HOH A 70 670 27 HOH HOH . C 3 HOH A 71 671 11 HOH HOH . C 3 HOH A 72 672 16 HOH HOH . C 3 HOH A 73 673 147 HOH HOH . C 3 HOH A 74 674 106 HOH HOH . C 3 HOH A 75 675 104 HOH HOH . C 3 HOH A 76 676 57 HOH HOH . C 3 HOH A 77 677 19 HOH HOH . C 3 HOH A 78 678 29 HOH HOH . C 3 HOH A 79 679 155 HOH HOH . C 3 HOH A 80 680 84 HOH HOH . C 3 HOH A 81 681 126 HOH HOH . C 3 HOH A 82 682 21 HOH HOH . C 3 HOH A 83 683 62 HOH HOH . C 3 HOH A 84 684 7 HOH HOH . C 3 HOH A 85 685 40 HOH HOH . C 3 HOH A 86 686 38 HOH HOH . C 3 HOH A 87 687 66 HOH HOH . C 3 HOH A 88 688 52 HOH HOH . C 3 HOH A 89 689 200 HOH HOH . C 3 HOH A 90 690 97 HOH HOH . C 3 HOH A 91 691 23 HOH HOH . C 3 HOH A 92 692 48 HOH HOH . C 3 HOH A 93 693 197 HOH HOH . C 3 HOH A 94 694 143 HOH HOH . C 3 HOH A 95 695 227 HOH HOH . C 3 HOH A 96 696 214 HOH HOH . C 3 HOH A 97 697 215 HOH HOH . C 3 HOH A 98 698 183 HOH HOH . C 3 HOH A 99 699 71 HOH HOH . C 3 HOH A 100 700 4 HOH HOH . C 3 HOH A 101 701 28 HOH HOH . C 3 HOH A 102 702 20 HOH HOH . C 3 HOH A 103 703 141 HOH HOH . C 3 HOH A 104 704 75 HOH HOH . C 3 HOH A 105 705 35 HOH HOH . C 3 HOH A 106 706 213 HOH HOH . C 3 HOH A 107 707 65 HOH HOH . C 3 HOH A 108 708 5 HOH HOH . C 3 HOH A 109 709 172 HOH HOH . C 3 HOH A 110 710 135 HOH HOH . C 3 HOH A 111 711 242 HOH HOH . C 3 HOH A 112 712 6 HOH HOH . C 3 HOH A 113 713 123 HOH HOH . C 3 HOH A 114 714 186 HOH HOH . C 3 HOH A 115 715 81 HOH HOH . C 3 HOH A 116 716 59 HOH HOH . C 3 HOH A 117 717 148 HOH HOH . C 3 HOH A 118 718 93 HOH HOH . C 3 HOH A 119 719 53 HOH HOH . C 3 HOH A 120 720 142 HOH HOH . C 3 HOH A 121 721 181 HOH HOH . C 3 HOH A 122 722 217 HOH HOH . C 3 HOH A 123 723 156 HOH HOH . C 3 HOH A 124 724 109 HOH HOH . C 3 HOH A 125 725 80 HOH HOH . C 3 HOH A 126 726 94 HOH HOH . C 3 HOH A 127 727 46 HOH HOH . C 3 HOH A 128 728 233 HOH HOH . C 3 HOH A 129 729 107 HOH HOH . C 3 HOH A 130 730 15 HOH HOH . C 3 HOH A 131 731 158 HOH HOH . C 3 HOH A 132 732 225 HOH HOH . C 3 HOH A 133 733 221 HOH HOH . C 3 HOH A 134 734 12 HOH HOH . C 3 HOH A 135 735 55 HOH HOH . C 3 HOH A 136 736 177 HOH HOH . C 3 HOH A 137 737 87 HOH HOH . C 3 HOH A 138 738 226 HOH HOH . C 3 HOH A 139 739 209 HOH HOH . C 3 HOH A 140 740 51 HOH HOH . C 3 HOH A 141 741 63 HOH HOH . C 3 HOH A 142 742 219 HOH HOH . C 3 HOH A 143 743 91 HOH HOH . C 3 HOH A 144 744 121 HOH HOH . C 3 HOH A 145 745 235 HOH HOH . C 3 HOH A 146 746 47 HOH HOH . C 3 HOH A 147 747 90 HOH HOH . C 3 HOH A 148 748 131 HOH HOH . C 3 HOH A 149 749 73 HOH HOH . C 3 HOH A 150 750 69 HOH HOH . C 3 HOH A 151 751 50 HOH HOH . C 3 HOH A 152 752 194 HOH HOH . C 3 HOH A 153 753 210 HOH HOH . C 3 HOH A 154 754 170 HOH HOH . C 3 HOH A 155 755 238 HOH HOH . C 3 HOH A 156 756 168 HOH HOH . C 3 HOH A 157 757 246 HOH HOH . C 3 HOH A 158 758 245 HOH HOH . C 3 HOH A 159 759 195 HOH HOH . C 3 HOH A 160 760 244 HOH HOH . C 3 HOH A 161 761 111 HOH HOH . C 3 HOH A 162 762 201 HOH HOH . C 3 HOH A 163 763 224 HOH HOH . C 3 HOH A 164 764 116 HOH HOH . C 3 HOH A 165 765 102 HOH HOH . C 3 HOH A 166 766 187 HOH HOH . C 3 HOH A 167 767 127 HOH HOH . C 3 HOH A 168 768 68 HOH HOH . C 3 HOH A 169 769 171 HOH HOH . C 3 HOH A 170 770 130 HOH HOH . C 3 HOH A 171 771 207 HOH HOH . C 3 HOH A 172 772 149 HOH HOH . C 3 HOH A 173 773 160 HOH HOH . C 3 HOH A 174 774 196 HOH HOH . C 3 HOH A 175 775 237 HOH HOH . C 3 HOH A 176 776 247 HOH HOH . C 3 HOH A 177 777 193 HOH HOH . C 3 HOH A 178 778 182 HOH HOH . C 3 HOH A 179 779 153 HOH HOH . C 3 HOH A 180 780 167 HOH HOH . C 3 HOH A 181 781 179 HOH HOH . C 3 HOH A 182 782 112 HOH HOH . C 3 HOH A 183 783 218 HOH HOH . C 3 HOH A 184 784 79 HOH HOH . C 3 HOH A 185 785 206 HOH HOH . C 3 HOH A 186 786 134 HOH HOH . C 3 HOH A 187 787 203 HOH HOH . C 3 HOH A 188 788 248 HOH HOH . C 3 HOH A 189 789 83 HOH HOH . C 3 HOH A 190 790 129 HOH HOH . C 3 HOH A 191 791 124 HOH HOH . C 3 HOH A 192 792 60 HOH HOH . C 3 HOH A 193 793 243 HOH HOH . C 3 HOH A 194 794 191 HOH HOH . C 3 HOH A 195 795 137 HOH HOH . C 3 HOH A 196 796 99 HOH HOH . C 3 HOH A 197 797 101 HOH HOH . C 3 HOH A 198 798 185 HOH HOH . C 3 HOH A 199 799 164 HOH HOH . C 3 HOH A 200 800 82 HOH HOH . C 3 HOH A 201 801 204 HOH HOH . C 3 HOH A 202 802 36 HOH HOH . C 3 HOH A 203 803 8 HOH HOH . C 3 HOH A 204 804 98 HOH HOH . C 3 HOH A 205 805 180 HOH HOH . C 3 HOH A 206 806 95 HOH HOH . C 3 HOH A 207 807 110 HOH HOH . C 3 HOH A 208 808 26 HOH HOH . C 3 HOH A 209 809 150 HOH HOH . C 3 HOH A 210 810 151 HOH HOH . C 3 HOH A 211 811 198 HOH HOH . C 3 HOH A 212 812 176 HOH HOH . C 3 HOH A 213 813 161 HOH HOH . C 3 HOH A 214 814 184 HOH HOH . C 3 HOH A 215 815 202 HOH HOH . C 3 HOH A 216 816 240 HOH HOH . C 3 HOH A 217 817 159 HOH HOH . C 3 HOH A 218 818 89 HOH HOH . C 3 HOH A 219 819 212 HOH HOH . C 3 HOH A 220 820 132 HOH HOH . C 3 HOH A 221 821 140 HOH HOH . C 3 HOH A 222 822 37 HOH HOH . C 3 HOH A 223 823 64 HOH HOH . C 3 HOH A 224 824 70 HOH HOH . C 3 HOH A 225 825 133 HOH HOH . C 3 HOH A 226 826 33 HOH HOH . C 3 HOH A 227 827 139 HOH HOH . C 3 HOH A 228 828 100 HOH HOH . C 3 HOH A 229 829 103 HOH HOH . C 3 HOH A 230 830 42 HOH HOH . C 3 HOH A 231 831 157 HOH HOH . C 3 HOH A 232 832 239 HOH HOH . C 3 HOH A 233 833 113 HOH HOH . C 3 HOH A 234 834 208 HOH HOH . C 3 HOH A 235 835 67 HOH HOH . C 3 HOH A 236 836 86 HOH HOH . C 3 HOH A 237 837 77 HOH HOH . C 3 HOH A 238 838 211 HOH HOH . C 3 HOH A 239 839 205 HOH HOH . C 3 HOH A 240 840 249 HOH HOH . C 3 HOH A 241 841 231 HOH HOH . C 3 HOH A 242 842 173 HOH HOH . C 3 HOH A 243 843 162 HOH HOH . C 3 HOH A 244 844 58 HOH HOH . C 3 HOH A 245 845 163 HOH HOH . C 3 HOH A 246 846 232 HOH HOH . C 3 HOH A 247 847 105 HOH HOH . C 3 HOH A 248 848 166 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol PB _atom_site.label_atom_id PB _atom_site.label_comp_id PB _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x -2.171 _atom_site.Cartn_y -9.388 _atom_site.Cartn_z 3.122 _atom_site.occupancy 0.3 _atom_site.B_iso_or_equiv 19.24 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id PB _atom_site.auth_comp_id PB _atom_site.auth_seq_id 501 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 65 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #