data_5VFI
#
_model_server_result.job_id            HP2j9jjxMCa1TeWb-vx3Kg 
_model_server_result.datetime_utc      '2024-11-28 21:24:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5vfi 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":709}' 
#
_entry.id    5VFI 
#
_exptl.entry_id    5VFI 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5VFI 
_cell.length_a            72.867 
_cell.length_b            103.908 
_cell.length_c            38.464 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5VFI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 I N N 
? 3 J N N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 183 n n 
C1 C2 EDO sing 184 n n 
C1 H11 EDO sing 185 n n 
C1 H12 EDO sing 186 n n 
O1 HO1 EDO sing 187 n n 
C2 O2 EDO sing 188 n n 
C2 H21 EDO sing 189 n n 
C2 H22 EDO sing 190 n n 
O2 HO2 EDO sing 191 n n 
#
_atom_sites.entry_id                     5VFI 
_atom_sites.fract_transf_matrix[1][1]    0.013724 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009624 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.025998 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 9AJ A 1 701 1 9AJ DRG . 
C 3 EDO A 1 702 1 EDO EDO . 
D 3 EDO A 1 703 2 EDO EDO . 
E 3 EDO A 1 704 3 EDO EDO . 
F 3 EDO A 1 705 4 EDO EDO . 
G 3 EDO A 1 706 5 EDO EDO . 
H 3 EDO A 1 707 6 EDO EDO . 
I 3 EDO A 1 708 7 EDO EDO . 
J 3 EDO A 1 709 8 EDO EDO . 
K 4 SO4 A 1 710 9 SO4 SO4 . 
L 4 SO4 A 1 711 10 SO4 SO4 . 
M 5 HOH A 1 801 111 HOH HOH . 
M 5 HOH A 2 802 254 HOH HOH . 
M 5 HOH A 3 803 5 HOH HOH . 
M 5 HOH A 4 804 123 HOH HOH . 
M 5 HOH A 5 805 36 HOH HOH . 
M 5 HOH A 6 806 185 HOH HOH . 
M 5 HOH A 7 807 195 HOH HOH . 
M 5 HOH A 8 808 210 HOH HOH . 
M 5 HOH A 9 809 13 HOH HOH . 
M 5 HOH A 10 810 87 HOH HOH . 
M 5 HOH A 11 811 205 HOH HOH . 
M 5 HOH A 12 812 267 HOH HOH . 
M 5 HOH A 13 813 178 HOH HOH . 
M 5 HOH A 14 814 137 HOH HOH . 
M 5 HOH A 15 815 275 HOH HOH . 
M 5 HOH A 16 816 84 HOH HOH . 
M 5 HOH A 17 817 104 HOH HOH . 
M 5 HOH A 18 818 194 HOH HOH . 
M 5 HOH A 19 819 82 HOH HOH . 
M 5 HOH A 20 820 7 HOH HOH . 
M 5 HOH A 21 821 37 HOH HOH . 
M 5 HOH A 22 822 268 HOH HOH . 
M 5 HOH A 23 823 116 HOH HOH . 
M 5 HOH A 24 824 177 HOH HOH . 
M 5 HOH A 25 825 100 HOH HOH . 
M 5 HOH A 26 826 240 HOH HOH . 
M 5 HOH A 27 827 183 HOH HOH . 
M 5 HOH A 28 828 138 HOH HOH . 
M 5 HOH A 29 829 172 HOH HOH . 
M 5 HOH A 30 830 101 HOH HOH . 
M 5 HOH A 31 831 228 HOH HOH . 
M 5 HOH A 32 832 42 HOH HOH . 
M 5 HOH A 33 833 92 HOH HOH . 
M 5 HOH A 34 834 113 HOH HOH . 
M 5 HOH A 35 835 24 HOH HOH . 
M 5 HOH A 36 836 175 HOH HOH . 
M 5 HOH A 37 837 236 HOH HOH . 
M 5 HOH A 38 838 4 HOH HOH . 
M 5 HOH A 39 839 124 HOH HOH . 
M 5 HOH A 40 840 58 HOH HOH . 
M 5 HOH A 41 841 77 HOH HOH . 
M 5 HOH A 42 842 16 HOH HOH . 
M 5 HOH A 43 843 18 HOH HOH . 
M 5 HOH A 44 844 265 HOH HOH . 
M 5 HOH A 45 845 90 HOH HOH . 
M 5 HOH A 46 846 57 HOH HOH . 
M 5 HOH A 47 847 76 HOH HOH . 
M 5 HOH A 48 848 106 HOH HOH . 
M 5 HOH A 49 849 53 HOH HOH . 
M 5 HOH A 50 850 55 HOH HOH . 
M 5 HOH A 51 851 215 HOH HOH . 
M 5 HOH A 52 852 216 HOH HOH . 
M 5 HOH A 53 853 12 HOH HOH . 
M 5 HOH A 54 854 146 HOH HOH . 
M 5 HOH A 55 855 68 HOH HOH . 
M 5 HOH A 56 856 96 HOH HOH . 
M 5 HOH A 57 857 155 HOH HOH . 
M 5 HOH A 58 858 49 HOH HOH . 
M 5 HOH A 59 859 278 HOH HOH . 
M 5 HOH A 60 860 59 HOH HOH . 
M 5 HOH A 61 861 222 HOH HOH . 
M 5 HOH A 62 862 105 HOH HOH . 
M 5 HOH A 63 863 263 HOH HOH . 
M 5 HOH A 64 864 152 HOH HOH . 
M 5 HOH A 65 865 31 HOH HOH . 
M 5 HOH A 66 866 193 HOH HOH . 
M 5 HOH A 67 867 52 HOH HOH . 
M 5 HOH A 68 868 21 HOH HOH . 
M 5 HOH A 69 869 115 HOH HOH . 
M 5 HOH A 70 870 140 HOH HOH . 
M 5 HOH A 71 871 93 HOH HOH . 
M 5 HOH A 72 872 211 HOH HOH . 
M 5 HOH A 73 873 8 HOH HOH . 
M 5 HOH A 74 874 15 HOH HOH . 
M 5 HOH A 75 875 63 HOH HOH . 
M 5 HOH A 76 876 81 HOH HOH . 
M 5 HOH A 77 877 253 HOH HOH . 
M 5 HOH A 78 878 181 HOH HOH . 
M 5 HOH A 79 879 135 HOH HOH . 
M 5 HOH A 80 880 184 HOH HOH . 
M 5 HOH A 81 881 141 HOH HOH . 
M 5 HOH A 82 882 10 HOH HOH . 
M 5 HOH A 83 883 198 HOH HOH . 
M 5 HOH A 84 884 22 HOH HOH . 
M 5 HOH A 85 885 192 HOH HOH . 
M 5 HOH A 86 886 64 HOH HOH . 
M 5 HOH A 87 887 235 HOH HOH . 
M 5 HOH A 88 888 121 HOH HOH . 
M 5 HOH A 89 889 117 HOH HOH . 
M 5 HOH A 90 890 103 HOH HOH . 
M 5 HOH A 91 891 98 HOH HOH . 
M 5 HOH A 92 892 9 HOH HOH . 
M 5 HOH A 93 893 44 HOH HOH . 
M 5 HOH A 94 894 180 HOH HOH . 
M 5 HOH A 95 895 66 HOH HOH . 
M 5 HOH A 96 896 219 HOH HOH . 
M 5 HOH A 97 897 29 HOH HOH . 
M 5 HOH A 98 898 246 HOH HOH . 
M 5 HOH A 99 899 176 HOH HOH . 
M 5 HOH A 100 900 33 HOH HOH . 
M 5 HOH A 101 901 69 HOH HOH . 
M 5 HOH A 102 902 102 HOH HOH . 
M 5 HOH A 103 903 51 HOH HOH . 
M 5 HOH A 104 904 61 HOH HOH . 
M 5 HOH A 105 905 20 HOH HOH . 
M 5 HOH A 106 906 41 HOH HOH . 
M 5 HOH A 107 907 75 HOH HOH . 
M 5 HOH A 108 908 191 HOH HOH . 
M 5 HOH A 109 909 132 HOH HOH . 
M 5 HOH A 110 910 114 HOH HOH . 
M 5 HOH A 111 911 229 HOH HOH . 
M 5 HOH A 112 912 133 HOH HOH . 
M 5 HOH A 113 913 156 HOH HOH . 
M 5 HOH A 114 914 127 HOH HOH . 
M 5 HOH A 115 915 88 HOH HOH . 
M 5 HOH A 116 916 232 HOH HOH . 
M 5 HOH A 117 917 196 HOH HOH . 
M 5 HOH A 118 918 65 HOH HOH . 
M 5 HOH A 119 919 145 HOH HOH . 
M 5 HOH A 120 920 186 HOH HOH . 
M 5 HOH A 121 921 173 HOH HOH . 
M 5 HOH A 122 922 32 HOH HOH . 
M 5 HOH A 123 923 167 HOH HOH . 
M 5 HOH A 124 924 214 HOH HOH . 
M 5 HOH A 125 925 45 HOH HOH . 
M 5 HOH A 126 926 34 HOH HOH . 
M 5 HOH A 127 927 73 HOH HOH . 
M 5 HOH A 128 928 142 HOH HOH . 
M 5 HOH A 129 929 43 HOH HOH . 
M 5 HOH A 130 930 28 HOH HOH . 
M 5 HOH A 131 931 86 HOH HOH . 
M 5 HOH A 132 932 107 HOH HOH . 
M 5 HOH A 133 933 258 HOH HOH . 
M 5 HOH A 134 934 23 HOH HOH . 
M 5 HOH A 135 935 264 HOH HOH . 
M 5 HOH A 136 936 1 HOH HOH . 
M 5 HOH A 137 937 83 HOH HOH . 
M 5 HOH A 138 938 2 HOH HOH . 
M 5 HOH A 139 939 67 HOH HOH . 
M 5 HOH A 140 940 120 HOH HOH . 
M 5 HOH A 141 941 179 HOH HOH . 
M 5 HOH A 142 942 6 HOH HOH . 
M 5 HOH A 143 943 74 HOH HOH . 
M 5 HOH A 144 944 3 HOH HOH . 
M 5 HOH A 145 945 70 HOH HOH . 
M 5 HOH A 146 946 94 HOH HOH . 
M 5 HOH A 147 947 40 HOH HOH . 
M 5 HOH A 148 948 200 HOH HOH . 
M 5 HOH A 149 949 189 HOH HOH . 
M 5 HOH A 150 950 50 HOH HOH . 
M 5 HOH A 151 951 62 HOH HOH . 
M 5 HOH A 152 952 226 HOH HOH . 
M 5 HOH A 153 953 274 HOH HOH . 
M 5 HOH A 154 954 199 HOH HOH . 
M 5 HOH A 155 955 48 HOH HOH . 
M 5 HOH A 156 956 72 HOH HOH . 
M 5 HOH A 157 957 35 HOH HOH . 
M 5 HOH A 158 958 91 HOH HOH . 
M 5 HOH A 159 959 39 HOH HOH . 
M 5 HOH A 160 960 161 HOH HOH . 
M 5 HOH A 161 961 118 HOH HOH . 
M 5 HOH A 162 962 78 HOH HOH . 
M 5 HOH A 163 963 85 HOH HOH . 
M 5 HOH A 164 964 207 HOH HOH . 
M 5 HOH A 165 965 174 HOH HOH . 
M 5 HOH A 166 966 158 HOH HOH . 
M 5 HOH A 167 967 234 HOH HOH . 
M 5 HOH A 168 968 204 HOH HOH . 
M 5 HOH A 169 969 279 HOH HOH . 
M 5 HOH A 170 970 227 HOH HOH . 
M 5 HOH A 171 971 247 HOH HOH . 
M 5 HOH A 172 972 128 HOH HOH . 
M 5 HOH A 173 973 168 HOH HOH . 
M 5 HOH A 174 974 125 HOH HOH . 
M 5 HOH A 175 975 150 HOH HOH . 
M 5 HOH A 176 976 151 HOH HOH . 
M 5 HOH A 177 977 261 HOH HOH . 
M 5 HOH A 178 978 221 HOH HOH . 
M 5 HOH A 179 979 17 HOH HOH . 
M 5 HOH A 180 980 71 HOH HOH . 
M 5 HOH A 181 981 169 HOH HOH . 
M 5 HOH A 182 982 220 HOH HOH . 
M 5 HOH A 183 983 14 HOH HOH . 
M 5 HOH A 184 984 89 HOH HOH . 
M 5 HOH A 185 985 38 HOH HOH . 
M 5 HOH A 186 986 11 HOH HOH . 
M 5 HOH A 187 987 19 HOH HOH . 
M 5 HOH A 188 988 248 HOH HOH . 
M 5 HOH A 189 989 30 HOH HOH . 
M 5 HOH A 190 990 99 HOH HOH . 
M 5 HOH A 191 991 148 HOH HOH . 
M 5 HOH A 192 992 54 HOH HOH . 
M 5 HOH A 193 993 197 HOH HOH . 
M 5 HOH A 194 994 25 HOH HOH . 
M 5 HOH A 195 995 139 HOH HOH . 
M 5 HOH A 196 996 27 HOH HOH . 
M 5 HOH A 197 997 182 HOH HOH . 
M 5 HOH A 198 998 160 HOH HOH . 
M 5 HOH A 199 999 218 HOH HOH . 
M 5 HOH A 200 1000 230 HOH HOH . 
M 5 HOH A 201 1001 157 HOH HOH . 
M 5 HOH A 202 1002 134 HOH HOH . 
M 5 HOH A 203 1003 119 HOH HOH . 
M 5 HOH A 204 1004 56 HOH HOH . 
M 5 HOH A 205 1005 26 HOH HOH . 
M 5 HOH A 206 1006 209 HOH HOH . 
M 5 HOH A 207 1007 271 HOH HOH . 
M 5 HOH A 208 1008 231 HOH HOH . 
M 5 HOH A 209 1009 217 HOH HOH . 
M 5 HOH A 210 1010 110 HOH HOH . 
M 5 HOH A 211 1011 266 HOH HOH . 
M 5 HOH A 212 1012 223 HOH HOH . 
M 5 HOH A 213 1013 122 HOH HOH . 
M 5 HOH A 214 1014 260 HOH HOH . 
M 5 HOH A 215 1015 126 HOH HOH . 
M 5 HOH A 216 1016 131 HOH HOH . 
M 5 HOH A 217 1017 170 HOH HOH . 
M 5 HOH A 218 1018 163 HOH HOH . 
M 5 HOH A 219 1019 144 HOH HOH . 
M 5 HOH A 220 1020 159 HOH HOH . 
M 5 HOH A 221 1021 190 HOH HOH . 
M 5 HOH A 222 1022 237 HOH HOH . 
M 5 HOH A 223 1023 47 HOH HOH . 
M 5 HOH A 224 1024 130 HOH HOH . 
M 5 HOH A 225 1025 188 HOH HOH . 
M 5 HOH A 226 1026 242 HOH HOH . 
M 5 HOH A 227 1027 129 HOH HOH . 
M 5 HOH A 228 1028 244 HOH HOH . 
M 5 HOH A 229 1029 95 HOH HOH . 
M 5 HOH A 230 1030 136 HOH HOH . 
M 5 HOH A 231 1031 46 HOH HOH . 
M 5 HOH A 232 1032 256 HOH HOH . 
M 5 HOH A 233 1033 108 HOH HOH . 
M 5 HOH A 234 1034 251 HOH HOH . 
M 5 HOH A 235 1035 147 HOH HOH . 
M 5 HOH A 236 1036 252 HOH HOH . 
M 5 HOH A 237 1037 233 HOH HOH . 
M 5 HOH A 238 1038 241 HOH HOH . 
M 5 HOH A 239 1039 149 HOH HOH . 
M 5 HOH A 240 1040 276 HOH HOH . 
M 5 HOH A 241 1041 80 HOH HOH . 
M 5 HOH A 242 1042 165 HOH HOH . 
M 5 HOH A 243 1043 109 HOH HOH . 
M 5 HOH A 244 1044 270 HOH HOH . 
M 5 HOH A 245 1045 97 HOH HOH . 
M 5 HOH A 246 1046 255 HOH HOH . 
M 5 HOH A 247 1047 212 HOH HOH . 
M 5 HOH A 248 1048 238 HOH HOH . 
M 5 HOH A 249 1049 206 HOH HOH . 
M 5 HOH A 250 1050 79 HOH HOH . 
M 5 HOH A 251 1051 164 HOH HOH . 
M 5 HOH A 252 1052 202 HOH HOH . 
M 5 HOH A 253 1053 166 HOH HOH . 
M 5 HOH A 254 1054 213 HOH HOH . 
M 5 HOH A 255 1055 245 HOH HOH . 
M 5 HOH A 256 1056 153 HOH HOH . 
M 5 HOH A 257 1057 262 HOH HOH . 
M 5 HOH A 258 1058 203 HOH HOH . 
M 5 HOH A 259 1059 280 HOH HOH . 
M 5 HOH A 260 1060 273 HOH HOH . 
M 5 HOH A 261 1061 187 HOH HOH . 
M 5 HOH A 262 1062 277 HOH HOH . 
M 5 HOH A 263 1063 201 HOH HOH . 
M 5 HOH A 264 1064 250 HOH HOH . 
M 5 HOH A 265 1065 272 HOH HOH . 
M 5 HOH A 266 1066 249 HOH HOH . 
M 5 HOH A 267 1067 239 HOH HOH . 
M 5 HOH A 268 1068 259 HOH HOH . 
M 5 HOH A 269 1069 281 HOH HOH . 
M 5 HOH A 270 1070 224 HOH HOH . 
M 5 HOH A 271 1071 154 HOH HOH . 
M 5 HOH A 272 1072 143 HOH HOH . 
M 5 HOH A 273 1073 225 HOH HOH . 
M 5 HOH A 274 1074 171 HOH HOH . 
M 5 HOH A 275 1075 112 HOH HOH . 
M 5 HOH A 276 1076 243 HOH HOH . 
M 5 HOH A 277 1077 257 HOH HOH . 
M 5 HOH A 278 1078 162 HOH HOH . 
M 5 HOH A 279 1079 208 HOH HOH . 
M 5 HOH A 280 1080 60 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . J 3 27.96 34.821 0.705 1 27.62 ? C1 EDO 709 A 1 
HETATM 2 O O1 EDO . . . J 3 26.783 34.056 0.897 1 28.55 ? O1 EDO 709 A 1 
HETATM 3 C C2 EDO . . . J 3 29.169 33.896 0.911 1 19.1 ? C2 EDO 709 A 1 
HETATM 4 O O2 EDO . . . J 3 29.247 32.82 -0.006 1 18.47 ? O2 EDO 709 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           298 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           4 
#