data_5VFN # _model_server_result.job_id JOSTnrTpih_scEIa5EXt3Q _model_server_result.datetime_utc '2024-11-08 13:51:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5vfn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 5VFN # _exptl.entry_id 5VFN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 150.174 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HYDROCINNAMIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.86 _cell.angle_gamma 90 _cell.entry_id 5VFN _cell.length_a 45.775 _cell.length_b 58.655 _cell.length_c 58.128 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5VFN _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 26 A CYS 27 1_555 A SG CYS 115 A CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? disulf ? disulf2 A SG CYS 28 A CYS 29 1_555 A SG CYS 44 A CYS 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 A SG CYS 50 A CYS 51 1_555 A SG CYS 88 A CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf4 A SG CYS 75 A CYS 84 1_555 A SG CYS 86 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.935 ? disulf ? disulf5 B SG CYS 43 B CYS 44 1_555 B SG CYS 95 B CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf6 B SG CYS 50 B CYS 51 1_555 B SG CYS 88 B CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf7 B SG CYS 57 B CYS 61 1_555 B SG CYS 81 B CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf8 B SG CYS 75 B CYS 84 1_555 B SG CYS 86 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 A SG CYS 57 A CYS 61 1_555 A CB CYS 81 A CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.836 ? covale ? covale2 B SG CYS 26 B CYS 27 1_555 B CB CYS 115 B CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.932 ? # _chem_comp.formula 'C9 H10 O2' _chem_comp.formula_weight 150.174 _chem_comp.id HCI _chem_comp.mon_nstd_flag . _chem_comp.name 'HYDROCINNAMIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '3PP;3-PHENYLPROPIONIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 HCI doub 129 n n C1 O2 HCI sing 130 n n C1 C2 HCI sing 131 n n O2 HO2 HCI sing 132 n n C2 C3 HCI sing 133 n n C2 H21 HCI sing 134 n n C2 H22 HCI sing 135 n n C3 C1' HCI sing 136 n n C3 H31 HCI sing 137 n n C3 H32 HCI sing 138 n n C1' C2' HCI doub 139 n y C1' C6' HCI sing 140 n y C2' C3' HCI sing 141 n y C2' H2' HCI sing 142 n n C3' C4' HCI doub 143 n y C3' H3' HCI sing 144 n n C4' C5' HCI sing 145 n y C4' H4' HCI sing 146 n n C5' C6' HCI doub 147 n y C5' H5' HCI sing 148 n n C6' H6' HCI sing 149 n n # _atom_sites.entry_id 5VFN _atom_sites.fract_transf_matrix[1][1] 0.021846 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002241 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017049 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017294 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HCI A 1 201 2 HCI CAF . D 3 ME2 A 1 202 7 ME2 PE4 . E 4 SO4 A 1 203 1 SO4 SO4 . F 4 SO4 A 1 204 1 SO4 SO4 . G 4 SO4 A 1 205 1 SO4 SO4 . H 3 ME2 B 1 201 6 ME2 PE4 . I 4 SO4 B 1 202 1 SO4 SO4 . J 4 SO4 B 1 203 1 SO4 SO4 . K 4 SO4 B 1 204 1 SO4 SO4 . L 5 HOH A 1 301 87 HOH HOH . L 5 HOH A 2 302 63 HOH HOH . L 5 HOH A 3 303 78 HOH HOH . L 5 HOH A 4 304 39 HOH HOH . L 5 HOH A 5 305 37 HOH HOH . L 5 HOH A 6 306 35 HOH HOH . L 5 HOH A 7 307 48 HOH HOH . L 5 HOH A 8 308 26 HOH HOH . L 5 HOH A 9 309 86 HOH HOH . L 5 HOH A 10 310 41 HOH HOH . L 5 HOH A 11 311 16 HOH HOH . L 5 HOH A 12 312 70 HOH HOH . L 5 HOH A 13 313 8 HOH HOH . L 5 HOH A 14 314 5 HOH HOH . L 5 HOH A 15 315 6 HOH HOH . L 5 HOH A 16 316 45 HOH HOH . L 5 HOH A 17 317 56 HOH HOH . L 5 HOH A 18 318 24 HOH HOH . L 5 HOH A 19 319 25 HOH HOH . L 5 HOH A 20 320 76 HOH HOH . L 5 HOH A 21 321 42 HOH HOH . L 5 HOH A 22 322 36 HOH HOH . L 5 HOH A 23 323 12 HOH HOH . L 5 HOH A 24 324 28 HOH HOH . L 5 HOH A 25 325 43 HOH HOH . L 5 HOH A 26 326 90 HOH HOH . L 5 HOH A 27 327 58 HOH HOH . L 5 HOH A 28 328 92 HOH HOH . L 5 HOH A 29 329 17 HOH HOH . L 5 HOH A 30 330 69 HOH HOH . L 5 HOH A 31 331 20 HOH HOH . L 5 HOH A 32 332 74 HOH HOH . L 5 HOH A 33 333 100 HOH HOH . L 5 HOH A 34 334 88 HOH HOH . L 5 HOH A 35 335 23 HOH HOH . L 5 HOH A 36 336 68 HOH HOH . L 5 HOH A 37 337 64 HOH HOH . L 5 HOH A 38 338 30 HOH HOH . L 5 HOH A 39 339 31 HOH HOH . L 5 HOH A 40 340 57 HOH HOH . L 5 HOH A 41 341 3 HOH HOH . L 5 HOH A 42 342 102 HOH HOH . L 5 HOH A 43 343 97 HOH HOH . L 5 HOH A 44 344 50 HOH HOH . L 5 HOH A 45 345 79 HOH HOH . L 5 HOH A 46 346 73 HOH HOH . L 5 HOH A 47 347 98 HOH HOH . L 5 HOH A 48 348 19 HOH HOH . L 5 HOH A 49 349 71 HOH HOH . L 5 HOH A 50 350 101 HOH HOH . L 5 HOH A 51 351 96 HOH HOH . M 5 HOH B 1 301 44 HOH HOH . M 5 HOH B 2 302 1 HOH HOH . M 5 HOH B 3 303 32 HOH HOH . M 5 HOH B 4 304 75 HOH HOH . M 5 HOH B 5 305 22 HOH HOH . M 5 HOH B 6 306 10 HOH HOH . M 5 HOH B 7 307 38 HOH HOH . M 5 HOH B 8 308 60 HOH HOH . M 5 HOH B 9 309 18 HOH HOH . M 5 HOH B 10 310 29 HOH HOH . M 5 HOH B 11 311 33 HOH HOH . M 5 HOH B 12 312 46 HOH HOH . M 5 HOH B 13 313 7 HOH HOH . M 5 HOH B 14 314 93 HOH HOH . M 5 HOH B 15 315 4 HOH HOH . M 5 HOH B 16 316 51 HOH HOH . M 5 HOH B 17 317 49 HOH HOH . M 5 HOH B 18 318 67 HOH HOH . M 5 HOH B 19 319 2 HOH HOH . M 5 HOH B 20 320 34 HOH HOH . M 5 HOH B 21 321 11 HOH HOH . M 5 HOH B 22 322 13 HOH HOH . M 5 HOH B 23 323 53 HOH HOH . M 5 HOH B 24 324 47 HOH HOH . M 5 HOH B 25 325 85 HOH HOH . M 5 HOH B 26 326 9 HOH HOH . M 5 HOH B 27 327 14 HOH HOH . M 5 HOH B 28 328 62 HOH HOH . M 5 HOH B 29 329 82 HOH HOH . M 5 HOH B 30 330 103 HOH HOH . M 5 HOH B 31 331 52 HOH HOH . M 5 HOH B 32 332 77 HOH HOH . M 5 HOH B 33 333 91 HOH HOH . M 5 HOH B 34 334 72 HOH HOH . M 5 HOH B 35 335 81 HOH HOH . M 5 HOH B 36 336 55 HOH HOH . M 5 HOH B 37 337 94 HOH HOH . M 5 HOH B 38 338 99 HOH HOH . M 5 HOH B 39 339 21 HOH HOH . M 5 HOH B 40 340 66 HOH HOH . M 5 HOH B 41 341 15 HOH HOH . M 5 HOH B 42 342 84 HOH HOH . M 5 HOH B 43 343 59 HOH HOH . M 5 HOH B 44 344 61 HOH HOH . M 5 HOH B 45 345 40 HOH HOH . M 5 HOH B 46 346 95 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 HCI . . . C 2 35.135 1.961 113.235 1 69.32 ? C1 HCI 201 A 1 HETATM 2 O O1 HCI . . . C 2 34.206 1.243 112.82 1 69.88 ? O1 HCI 201 A 1 HETATM 3 O O2 HCI . . . C 2 34.866 2.914 114.002 1 69.1 ? O2 HCI 201 A 1 HETATM 4 C C2 HCI . . . C 2 36.56 1.682 112.817 1 68.89 ? C2 HCI 201 A 1 HETATM 5 C C3 HCI . . . C 2 37.336 2.769 112.915 1 68.72 ? C3 HCI 201 A 1 HETATM 6 C C1' HCI . . . C 2 38.793 2.945 112.627 1 68.34 ? C1' HCI 201 A 1 HETATM 7 C C2' HCI . . . C 2 39.743 1.929 112.9 1 68.09 ? C2' HCI 201 A 1 HETATM 8 C C3' HCI . . . C 2 41.11 2.145 112.616 1 68.05 ? C3' HCI 201 A 1 HETATM 9 C C4' HCI . . . C 2 41.529 3.387 112.076 1 68.18 ? C4' HCI 201 A 1 HETATM 10 C C5' HCI . . . C 2 40.576 4.41 111.825 1 68.23 ? C5' HCI 201 A 1 HETATM 11 C C6' HCI . . . C 2 39.215 4.183 112.102 1 68.06 ? C6' HCI 201 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 11 #