data_5VGA
#
_model_server_result.job_id            kylf07dh79XwH93Yjy7QTQ 
_model_server_result.datetime_utc      '2024-11-02 05:32:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5vga 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":301}' 
#
_entry.id    5VGA 
#
_exptl.entry_id    5VGA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              150.173 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'TRIETHYLENE GLYCOL' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          101.97 
_cell.angle_gamma         90 
_cell.entry_id            5VGA 
_cell.length_a            54.182 
_cell.length_b            76.971 
_cell.length_c            59.122 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5VGA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 23 A CYS 23 1_555 A SG CYS 88 A CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf2 A SG CYS 134 A CYS 134 1_555 A SG CYS 194 A CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf3 B SG CYS 22 B CYS 22 1_555 B SG CYS 96 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf4 B SG CYS 148 B CYS 148 1_555 B SG CYS 203 B CYS 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
#
_chem_comp.formula           'C6 H14 O4' 
_chem_comp.formula_weight    150.173 
_chem_comp.id                PGE 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'TRIETHYLENE GLYCOL' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 PGE sing 237 n n 
C1 C2 PGE sing 238 n n 
C1 H1 PGE sing 239 n n 
C1 H12 PGE sing 240 n n 
O1 HO1 PGE sing 241 n n 
C2 O2 PGE sing 242 n n 
C2 H2 PGE sing 243 n n 
C2 H22 PGE sing 244 n n 
O2 C3 PGE sing 245 n n 
C3 C4 PGE sing 246 n n 
C3 H3 PGE sing 247 n n 
C3 H32 PGE sing 248 n n 
C4 O3 PGE sing 249 n n 
C4 H4 PGE sing 250 n n 
C4 H42 PGE sing 251 n n 
O4 C6 PGE sing 252 n n 
O4 HO4 PGE sing 253 n n 
C6 C5 PGE sing 254 n n 
C6 H6 PGE sing 255 n n 
C6 H62 PGE sing 256 n n 
C5 O3 PGE sing 257 n n 
C5 H5 PGE sing 258 n n 
C5 H52 PGE sing 259 n n 
#
_atom_sites.entry_id                     5VGA 
_atom_sites.fract_transf_matrix[1][1]    0.018456 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003913 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012992 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01729 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 PGE A 1 301 1 PGE 1PE . 
D 4 HOH A 1 401 86 HOH HOH . 
D 4 HOH A 2 402 50 HOH HOH . 
D 4 HOH A 3 403 36 HOH HOH . 
D 4 HOH A 4 404 63 HOH HOH . 
D 4 HOH A 5 405 17 HOH HOH . 
D 4 HOH A 6 406 33 HOH HOH . 
D 4 HOH A 7 407 114 HOH HOH . 
D 4 HOH A 8 408 157 HOH HOH . 
D 4 HOH A 9 409 100 HOH HOH . 
D 4 HOH A 10 410 62 HOH HOH . 
D 4 HOH A 11 411 152 HOH HOH . 
D 4 HOH A 12 412 60 HOH HOH . 
D 4 HOH A 13 413 145 HOH HOH . 
D 4 HOH A 14 414 32 HOH HOH . 
D 4 HOH A 15 415 154 HOH HOH . 
D 4 HOH A 16 416 21 HOH HOH . 
D 4 HOH A 17 417 85 HOH HOH . 
D 4 HOH A 18 418 27 HOH HOH . 
D 4 HOH A 19 419 74 HOH HOH . 
D 4 HOH A 20 420 14 HOH HOH . 
D 4 HOH A 21 421 45 HOH HOH . 
D 4 HOH A 22 422 9 HOH HOH . 
D 4 HOH A 23 423 59 HOH HOH . 
D 4 HOH A 24 424 71 HOH HOH . 
D 4 HOH A 25 425 138 HOH HOH . 
D 4 HOH A 26 426 58 HOH HOH . 
D 4 HOH A 27 427 115 HOH HOH . 
D 4 HOH A 28 428 131 HOH HOH . 
D 4 HOH A 29 429 46 HOH HOH . 
D 4 HOH A 30 430 6 HOH HOH . 
D 4 HOH A 31 431 7 HOH HOH . 
D 4 HOH A 32 432 39 HOH HOH . 
D 4 HOH A 33 433 29 HOH HOH . 
D 4 HOH A 34 434 108 HOH HOH . 
D 4 HOH A 35 435 25 HOH HOH . 
D 4 HOH A 36 436 134 HOH HOH . 
D 4 HOH A 37 437 79 HOH HOH . 
D 4 HOH A 38 438 12 HOH HOH . 
D 4 HOH A 39 439 41 HOH HOH . 
D 4 HOH A 40 440 30 HOH HOH . 
D 4 HOH A 41 441 77 HOH HOH . 
D 4 HOH A 42 442 31 HOH HOH . 
D 4 HOH A 43 443 158 HOH HOH . 
D 4 HOH A 44 444 3 HOH HOH . 
D 4 HOH A 45 445 11 HOH HOH . 
D 4 HOH A 46 446 20 HOH HOH . 
D 4 HOH A 47 447 147 HOH HOH . 
D 4 HOH A 48 448 47 HOH HOH . 
D 4 HOH A 49 449 54 HOH HOH . 
D 4 HOH A 50 450 52 HOH HOH . 
D 4 HOH A 51 451 23 HOH HOH . 
D 4 HOH A 52 452 83 HOH HOH . 
D 4 HOH A 53 453 24 HOH HOH . 
D 4 HOH A 54 454 44 HOH HOH . 
D 4 HOH A 55 455 42 HOH HOH . 
D 4 HOH A 56 456 1 HOH HOH . 
D 4 HOH A 57 457 150 HOH HOH . 
D 4 HOH A 58 458 124 HOH HOH . 
D 4 HOH A 59 459 136 HOH HOH . 
D 4 HOH A 60 460 84 HOH HOH . 
D 4 HOH A 61 461 75 HOH HOH . 
D 4 HOH A 62 462 109 HOH HOH . 
D 4 HOH A 63 463 94 HOH HOH . 
D 4 HOH A 64 464 96 HOH HOH . 
D 4 HOH A 65 465 133 HOH HOH . 
D 4 HOH A 66 466 118 HOH HOH . 
D 4 HOH A 67 467 64 HOH HOH . 
D 4 HOH A 68 468 67 HOH HOH . 
D 4 HOH A 69 469 153 HOH HOH . 
D 4 HOH A 70 470 155 HOH HOH . 
D 4 HOH A 71 471 88 HOH HOH . 
D 4 HOH A 72 472 66 HOH HOH . 
D 4 HOH A 73 473 37 HOH HOH . 
D 4 HOH A 74 474 105 HOH HOH . 
D 4 HOH A 75 475 141 HOH HOH . 
D 4 HOH A 76 476 149 HOH HOH . 
E 4 HOH B 1 301 91 HOH HOH . 
E 4 HOH B 2 302 104 HOH HOH . 
E 4 HOH B 3 303 19 HOH HOH . 
E 4 HOH B 4 304 28 HOH HOH . 
E 4 HOH B 5 305 103 HOH HOH . 
E 4 HOH B 6 306 120 HOH HOH . 
E 4 HOH B 7 307 151 HOH HOH . 
E 4 HOH B 8 308 159 HOH HOH . 
E 4 HOH B 9 309 13 HOH HOH . 
E 4 HOH B 10 310 119 HOH HOH . 
E 4 HOH B 11 311 125 HOH HOH . 
E 4 HOH B 12 312 127 HOH HOH . 
E 4 HOH B 13 313 61 HOH HOH . 
E 4 HOH B 14 314 128 HOH HOH . 
E 4 HOH B 15 315 129 HOH HOH . 
E 4 HOH B 16 316 16 HOH HOH . 
E 4 HOH B 17 317 55 HOH HOH . 
E 4 HOH B 18 318 35 HOH HOH . 
E 4 HOH B 19 319 15 HOH HOH . 
E 4 HOH B 20 320 126 HOH HOH . 
E 4 HOH B 21 321 69 HOH HOH . 
E 4 HOH B 22 322 8 HOH HOH . 
E 4 HOH B 23 323 18 HOH HOH . 
E 4 HOH B 24 324 81 HOH HOH . 
E 4 HOH B 25 325 111 HOH HOH . 
E 4 HOH B 26 326 65 HOH HOH . 
E 4 HOH B 27 327 49 HOH HOH . 
E 4 HOH B 28 328 2 HOH HOH . 
E 4 HOH B 29 329 92 HOH HOH . 
E 4 HOH B 30 330 93 HOH HOH . 
E 4 HOH B 31 331 51 HOH HOH . 
E 4 HOH B 32 332 10 HOH HOH . 
E 4 HOH B 33 333 53 HOH HOH . 
E 4 HOH B 34 334 80 HOH HOH . 
E 4 HOH B 35 335 57 HOH HOH . 
E 4 HOH B 36 336 123 HOH HOH . 
E 4 HOH B 37 337 132 HOH HOH . 
E 4 HOH B 38 338 135 HOH HOH . 
E 4 HOH B 39 339 90 HOH HOH . 
E 4 HOH B 40 340 73 HOH HOH . 
E 4 HOH B 41 341 106 HOH HOH . 
E 4 HOH B 42 342 22 HOH HOH . 
E 4 HOH B 43 343 121 HOH HOH . 
E 4 HOH B 44 344 87 HOH HOH . 
E 4 HOH B 45 345 70 HOH HOH . 
E 4 HOH B 46 346 144 HOH HOH . 
E 4 HOH B 47 347 156 HOH HOH . 
E 4 HOH B 48 348 43 HOH HOH . 
E 4 HOH B 49 349 56 HOH HOH . 
E 4 HOH B 50 350 38 HOH HOH . 
E 4 HOH B 51 351 98 HOH HOH . 
E 4 HOH B 52 352 117 HOH HOH . 
E 4 HOH B 53 353 142 HOH HOH . 
E 4 HOH B 54 354 146 HOH HOH . 
E 4 HOH B 55 355 34 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PGE . . . C 3 12.019 -1.776 -5.391 1 28.5 ? C1 PGE 301 A 1 
HETATM 2 O O1 PGE . . . C 3 13.253 -2.248 -4.93 1 31.8 ? O1 PGE 301 A 1 
HETATM 3 C C2 PGE . . . C 3 11.86 -0.341 -4.896 1 28.54 ? C2 PGE 301 A 1 
HETATM 4 O O2 PGE . . . C 3 11.113 0.393 -5.821 1 32.38 ? O2 PGE 301 A 1 
HETATM 5 C C3 PGE . . . C 3 11.468 1.739 -5.969 1 29.49 ? C3 PGE 301 A 1 
HETATM 6 C C4 PGE . . . C 3 10.212 2.552 -5.695 1 31.53 ? C4 PGE 301 A 1 
HETATM 7 O O4 PGE . . . C 3 7.637 5.629 -4.753 1 26.6 ? O4 PGE 301 A 1 
HETATM 8 C C6 PGE . . . C 3 8.194 4.493 -5.347 1 27.86 ? C6 PGE 301 A 1 
HETATM 9 C C5 PGE . . . C 3 9.614 4.816 -5.834 1 28.83 ? C5 PGE 301 A 1 
HETATM 10 O O3 PGE . . . C 3 10.206 3.716 -6.466 1 30.97 ? O3 PGE 301 A 1 
HETATM 11 H H1 PGE . . . C 3 11.303 -2.327 -5.038 1 34.22 ? H1 PGE 301 A 1 
HETATM 12 H H12 PGE . . . C 3 12.001 -1.794 -6.36 1 34.22 ? H12 PGE 301 A 1 
HETATM 13 H HO1 PGE . . . C 3 13.38 -3.038 -5.219 1 38.18 ? HO1 PGE 301 A 1 
HETATM 14 H H2 PGE . . . C 3 11.404 -0.343 -4.04 1 34.27 ? H2 PGE 301 A 1 
HETATM 15 H H22 PGE . . . C 3 12.736 0.064 -4.794 1 34.27 ? H22 PGE 301 A 1 
HETATM 16 H H3 PGE . . . C 3 11.78 1.903 -6.872 1 35.42 ? H3 PGE 301 A 1 
HETATM 17 H H32 PGE . . . C 3 12.16 1.972 -5.33 1 35.42 ? H32 PGE 301 A 1 
HETATM 18 H H4 PGE . . . C 3 9.431 2.019 -5.914 1 37.85 ? H4 PGE 301 A 1 
HETATM 19 H H42 PGE . . . C 3 10.183 2.79 -4.755 1 37.85 ? H42 PGE 301 A 1 
HETATM 20 H H6 PGE . . . C 3 8.231 3.773 -4.697 1 33.45 ? H6 PGE 301 A 1 
HETATM 21 H H62 PGE . . . C 3 7.647 4.221 -6.1 1 33.45 ? H62 PGE 301 A 1 
HETATM 22 H H5 PGE . . . C 3 9.572 5.556 -6.459 1 34.62 ? H5 PGE 301 A 1 
HETATM 23 H H52 PGE . . . C 3 10.158 5.074 -5.073 1 34.62 ? H52 PGE 301 A 1 
#
_model_server_stats.io_time_ms              65 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           216 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           23 
#