data_5VGE # _model_server_result.job_id 5DgGUBmXlGh7bD1QVSnNsg _model_server_result.datetime_utc '2024-11-05 06:47:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5vge # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 5VGE # _exptl.entry_id 5VGE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5VGE _cell.length_a 99.67 _cell.length_b 99.67 _cell.length_c 77.914 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5VGE _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 101 A CYS 101 1_555 A SG CYS 164 A CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf2 A SG CYS 203 A CYS 203 1_555 A SG CYS 259 A CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf3 B SG CYS 26 B CYS 25 1_555 B SG CYS 81 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc1 A NE2 HIS 3 A HIS 3 1_555 D ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc2 A OE1 GLU 58 A GLU 58 1_555 D ZN ZN . A ZN 301 3_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.47 ? metalc ? metalc3 A OE2 GLU 58 A GLU 58 1_555 D ZN ZN . A ZN 301 3_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.447 ? metalc ? metalc4 A NE2 GLN 180 A GLN 180 1_555 D ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc5 A NE2 HIS 188 A HIS 188 1_555 E ZN ZN . A ZN 302 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.913 ? metalc ? metalc6 A NE2 HIS 192 A HIS 192 1_555 F ZN ZN . A ZN 303 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? metalc ? metalc7 A OD1 ASP 196 A ASP 196 1_555 F ZN ZN . A ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.786 ? metalc ? metalc8 A NE2 HIS 197 A HIS 197 1_555 E ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? metalc ? metalc9 A ND1 HIS 197 A HIS 197 1_555 F ZN ZN . A ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc10 A OE1 GLU 198 A GLU 198 1_555 E ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.615 ? metalc ? metalc11 A OE2 GLU 198 A GLU 198 1_555 E ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? metalc ? metalc12 E ZN ZN . A ZN 302 5_555 B O MET 100 B MET 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.844 ? metalc ? metalc13 F ZN ZN . A ZN 303 5_555 B OD1 ASP 99 B ASP 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5VGE _atom_sites.fract_transf_matrix[1][1] 0.010033 _atom_sites.fract_transf_matrix[1][2] 0.005793 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011585 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012835 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 ZN A 1 301 1 ZN ZN . E 4 ZN A 1 302 2 ZN ZN . F 4 ZN A 1 303 3 ZN ZN . G 5 HOH A 1 401 22 HOH HOH . G 5 HOH A 2 402 27 HOH HOH . G 5 HOH A 3 403 3 HOH HOH . G 5 HOH A 4 404 2 HOH HOH . G 5 HOH A 5 405 13 HOH HOH . G 5 HOH A 6 406 14 HOH HOH . G 5 HOH A 7 407 38 HOH HOH . G 5 HOH A 8 408 4 HOH HOH . G 5 HOH A 9 409 37 HOH HOH . G 5 HOH A 10 410 35 HOH HOH . G 5 HOH A 11 411 34 HOH HOH . G 5 HOH A 12 412 28 HOH HOH . G 5 HOH A 13 413 29 HOH HOH . H 5 HOH B 1 101 23 HOH HOH . H 5 HOH B 2 102 9 HOH HOH . H 5 HOH B 3 103 33 HOH HOH . H 5 HOH B 4 104 36 HOH HOH . H 5 HOH B 5 105 1 HOH HOH . H 5 HOH B 6 106 30 HOH HOH . H 5 HOH B 7 107 31 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 1.785 _atom_site.Cartn_y -50.287 _atom_site.Cartn_z -1.373 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 54.42 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 301 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 209 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #