data_5VH0 # _model_server_result.job_id 5CKPBl30K-Y_RD_5rqJRNQ _model_server_result.datetime_utc '2024-10-10 02:24:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5vh0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":102}' # _entry.id 5VH0 # _exptl.entry_id 5VH0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 202.251 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description pyrene _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5VH0 _cell.length_a 35.023 _cell.length_b 76.995 _cell.length_c 35.099 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5VH0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 3 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? tetrameric 4 author_defined_assembly 1 ? tetrameric 4 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,J,K 1 1,2 C,D,H,I,L,M 2 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_755 -x+2,y,-z -1 0 0 0 1 0 0 0 -1 70.046 0 0 3 'crystal symmetry operation' 2_856 -x+3,y,-z+1 -1 0 0 0 1 0 0 0 -1 105.069 0 35.099 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 H N N ? 2 I N N # _chem_comp.formula 'C16 H10' _chem_comp.formula_weight 202.251 _chem_comp.id 8P0 _chem_comp.mon_nstd_flag . _chem_comp.name pyrene _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C01 C14 8P0 doub 1 n y C01 C02 8P0 sing 2 n y C14 C13 8P0 sing 3 n y C02 C03 8P0 doub 4 n y C13 C15 8P0 doub 5 n y C13 C12 8P0 sing 6 n y C03 C12 8P0 sing 7 n y C03 C04 8P0 sing 8 n y C15 C16 8P0 sing 9 n y C12 C11 8P0 doub 10 n y C04 C05 8P0 doub 11 n y C16 C10 8P0 doub 12 n y C11 C10 8P0 sing 13 n y C11 C06 8P0 sing 14 n y C05 C06 8P0 sing 15 n y C10 C09 8P0 sing 16 n y C06 C07 8P0 doub 17 n y C09 C08 8P0 doub 18 n y C07 C08 8P0 sing 19 n y C01 H011 8P0 sing 20 n n C02 H021 8P0 sing 21 n n C04 H041 8P0 sing 22 n n C05 H051 8P0 sing 23 n n C07 H071 8P0 sing 24 n n C08 H081 8P0 sing 25 n n C09 H091 8P0 sing 26 n n C14 H141 8P0 sing 27 n n C15 H151 8P0 sing 28 n n C16 H161 8P0 sing 29 n n # _atom_sites.entry_id 5VH0 _atom_sites.fract_transf_matrix[1][1] 0.028553 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012988 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.028491 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 8P0 A 1 101 1 8P0 8P0 . F 2 8P0 A 1 102 4 8P0 8P0 . G 3 EDO A 1 103 1 EDO EDO . H 2 8P0 C 1 101 2 8P0 8P0 . I 2 8P0 D 1 101 3 8P0 8P0 . J 4 HOH A 1 201 29 HOH HOH . J 4 HOH A 2 202 63 HOH HOH . J 4 HOH A 3 203 14 HOH HOH . J 4 HOH A 4 204 65 HOH HOH . J 4 HOH A 5 205 94 HOH HOH . J 4 HOH A 6 206 1 HOH HOH . J 4 HOH A 7 207 15 HOH HOH . J 4 HOH A 8 208 23 HOH HOH . J 4 HOH A 9 209 3 HOH HOH . J 4 HOH A 10 210 16 HOH HOH . J 4 HOH A 11 211 51 HOH HOH . J 4 HOH A 12 212 106 HOH HOH . J 4 HOH A 13 213 36 HOH HOH . J 4 HOH A 14 214 43 HOH HOH . J 4 HOH A 15 215 121 HOH HOH . J 4 HOH A 16 216 73 HOH HOH . J 4 HOH A 17 217 41 HOH HOH . J 4 HOH A 18 218 75 HOH HOH . J 4 HOH A 19 219 93 HOH HOH . J 4 HOH A 20 220 56 HOH HOH . J 4 HOH A 21 221 38 HOH HOH . J 4 HOH A 22 222 118 HOH HOH . K 4 HOH B 1 101 85 HOH HOH . K 4 HOH B 2 102 30 HOH HOH . K 4 HOH B 3 103 34 HOH HOH . K 4 HOH B 4 104 81 HOH HOH . K 4 HOH B 5 105 49 HOH HOH . K 4 HOH B 6 106 35 HOH HOH . K 4 HOH B 7 107 32 HOH HOH . K 4 HOH B 8 108 4 HOH HOH . K 4 HOH B 9 109 109 HOH HOH . K 4 HOH B 10 110 2 HOH HOH . K 4 HOH B 11 111 70 HOH HOH . K 4 HOH B 12 112 10 HOH HOH . K 4 HOH B 13 113 13 HOH HOH . K 4 HOH B 14 114 59 HOH HOH . K 4 HOH B 15 115 67 HOH HOH . K 4 HOH B 16 116 39 HOH HOH . K 4 HOH B 17 117 105 HOH HOH . K 4 HOH B 18 118 110 HOH HOH . K 4 HOH B 19 119 87 HOH HOH . K 4 HOH B 20 120 116 HOH HOH . K 4 HOH B 21 121 101 HOH HOH . K 4 HOH B 22 122 111 HOH HOH . K 4 HOH B 23 123 86 HOH HOH . K 4 HOH B 24 124 24 HOH HOH . K 4 HOH B 25 125 17 HOH HOH . K 4 HOH B 26 126 33 HOH HOH . K 4 HOH B 27 127 72 HOH HOH . K 4 HOH B 28 128 100 HOH HOH . K 4 HOH B 29 129 113 HOH HOH . K 4 HOH B 30 130 61 HOH HOH . L 4 HOH C 1 201 21 HOH HOH . L 4 HOH C 2 202 79 HOH HOH . L 4 HOH C 3 203 47 HOH HOH . L 4 HOH C 4 204 28 HOH HOH . L 4 HOH C 5 205 9 HOH HOH . L 4 HOH C 6 206 12 HOH HOH . L 4 HOH C 7 207 84 HOH HOH . L 4 HOH C 8 208 25 HOH HOH . L 4 HOH C 9 209 76 HOH HOH . L 4 HOH C 10 210 37 HOH HOH . L 4 HOH C 11 211 27 HOH HOH . L 4 HOH C 12 212 57 HOH HOH . L 4 HOH C 13 213 89 HOH HOH . L 4 HOH C 14 214 7 HOH HOH . L 4 HOH C 15 215 117 HOH HOH . L 4 HOH C 16 216 53 HOH HOH . L 4 HOH C 17 217 42 HOH HOH . L 4 HOH C 18 218 96 HOH HOH . L 4 HOH C 19 219 120 HOH HOH . L 4 HOH C 20 220 119 HOH HOH . L 4 HOH C 21 221 71 HOH HOH . L 4 HOH C 22 222 22 HOH HOH . L 4 HOH C 23 223 115 HOH HOH . L 4 HOH C 24 224 90 HOH HOH . L 4 HOH C 25 225 8 HOH HOH . L 4 HOH C 26 226 69 HOH HOH . L 4 HOH C 27 227 122 HOH HOH . M 4 HOH D 1 201 104 HOH HOH . M 4 HOH D 2 202 11 HOH HOH . M 4 HOH D 3 203 82 HOH HOH . M 4 HOH D 4 204 20 HOH HOH . M 4 HOH D 5 205 40 HOH HOH . M 4 HOH D 6 206 91 HOH HOH . M 4 HOH D 7 207 45 HOH HOH . M 4 HOH D 8 208 18 HOH HOH . M 4 HOH D 9 209 31 HOH HOH . M 4 HOH D 10 210 5 HOH HOH . M 4 HOH D 11 211 50 HOH HOH . M 4 HOH D 12 212 52 HOH HOH . M 4 HOH D 13 213 44 HOH HOH . M 4 HOH D 14 214 97 HOH HOH . M 4 HOH D 15 215 80 HOH HOH . M 4 HOH D 16 216 46 HOH HOH . M 4 HOH D 17 217 19 HOH HOH . M 4 HOH D 18 218 55 HOH HOH . M 4 HOH D 19 219 88 HOH HOH . M 4 HOH D 20 220 26 HOH HOH . M 4 HOH D 21 221 77 HOH HOH . M 4 HOH D 22 222 64 HOH HOH . M 4 HOH D 23 223 78 HOH HOH . M 4 HOH D 24 224 48 HOH HOH . M 4 HOH D 25 225 68 HOH HOH . M 4 HOH D 26 226 6 HOH HOH . M 4 HOH D 27 227 112 HOH HOH . M 4 HOH D 28 228 83 HOH HOH . M 4 HOH D 29 229 74 HOH HOH . M 4 HOH D 30 230 58 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 8P0 . . . F 2 33.567 30.265 3.125 0.44 35.09 ? C01 8P0 102 A 1 HETATM 2 C C02 8P0 . . . F 2 32.912 30.748 2.008 0.44 34.8 ? C02 8P0 102 A 1 HETATM 3 C C03 8P0 . . . F 2 33.494 30.634 0.765 0.44 36.08 ? C03 8P0 102 A 1 HETATM 4 C C04 8P0 . . . F 2 32.867 31.112 -0.44 0.44 37 ? C04 8P0 102 A 1 HETATM 5 C C05 8P0 . . . F 2 33.461 30.987 -1.636 0.44 36.5 ? C05 8P0 102 A 1 HETATM 6 C C06 8P0 . . . F 2 34.749 30.368 -1.781 0.44 36.24 ? C06 8P0 102 A 1 HETATM 7 C C07 8P0 . . . F 2 35.366 30.233 -2.987 0.44 35.8 ? C07 8P0 102 A 1 HETATM 8 C C08 8P0 . . . F 2 36.6 29.635 -3.059 0.44 35.09 ? C08 8P0 102 A 1 HETATM 9 C C09 8P0 . . . F 2 37.24 29.156 -1.952 0.44 35.13 ? C09 8P0 102 A 1 HETATM 10 C C10 8P0 . . . F 2 36.646 29.28 -0.736 0.44 36.45 ? C10 8P0 102 A 1 HETATM 11 C C11 8P0 . . . F 2 35.385 29.89 -0.625 0.44 36.32 ? C11 8P0 102 A 1 HETATM 12 C C12 8P0 . . . F 2 34.757 30.022 0.642 0.44 36.28 ? C12 8P0 102 A 1 HETATM 13 C C13 8P0 . . . F 2 35.403 29.542 1.781 0.44 36.77 ? C13 8P0 102 A 1 HETATM 14 C C14 8P0 . . . F 2 34.807 29.667 2.993 0.44 35.81 ? C14 8P0 102 A 1 HETATM 15 C C15 8P0 . . . F 2 36.693 28.924 1.642 0.44 38.65 ? C15 8P0 102 A 1 HETATM 16 C C16 8P0 . . . F 2 37.284 28.799 0.446 0.44 38.37 ? C16 8P0 102 A 1 HETATM 17 H H011 8P0 . . . F 2 33.18 30.338 3.966 0.44 42.11 ? H011 8P0 102 A 1 HETATM 18 H H021 8P0 . . . F 2 32.08 31.141 2.134 0.44 41.76 ? H021 8P0 102 A 1 HETATM 19 H H041 8P0 . . . F 2 32.034 31.518 -0.381 0.44 44.4 ? H041 8P0 102 A 1 HETATM 20 H H051 8P0 . . . F 2 33.04 31.304 -2.401 0.44 43.8 ? H051 8P0 102 A 1 HETATM 21 H H071 8P0 . . . F 2 34.98 30.535 -3.776 0.44 42.96 ? H071 8P0 102 A 1 HETATM 22 H H081 8P0 . . . F 2 37.011 29.544 -3.887 0.44 42.11 ? H081 8P0 102 A 1 HETATM 23 H H091 8P0 . . . F 2 38.073 28.759 -2.053 0.44 42.16 ? H091 8P0 102 A 1 HETATM 24 H H141 8P0 . . . F 2 35.224 29.353 3.761 0.44 42.97 ? H141 8P0 102 A 1 HETATM 25 H H151 8P0 . . . F 2 37.116 28.605 2.405 0.44 46.38 ? H151 8P0 102 A 1 HETATM 26 H H161 8P0 . . . F 2 38.117 28.395 0.377 0.44 46.05 ? H161 8P0 102 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 260 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 26 #