data_5VH0 # _model_server_result.job_id DGGHFY2gTOAm2zsv7ZsXbw _model_server_result.datetime_utc '2024-11-25 06:59:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5vh0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":103}' # _entry.id 5VH0 # _exptl.entry_id 5VH0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5VH0 _cell.length_a 35.023 _cell.length_b 76.995 _cell.length_c 35.099 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5VH0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 3 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? tetrameric 4 author_defined_assembly 1 ? tetrameric 4 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,J,K 1 1,2 C,D,H,I,L,M 2 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_755 -x+2,y,-z -1 0 0 0 1 0 0 0 -1 70.046 0 0 3 'crystal symmetry operation' 2_856 -x+3,y,-z+1 -1 0 0 0 1 0 0 0 -1 105.069 0 35.099 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 99 n n C1 C2 EDO sing 100 n n C1 H11 EDO sing 101 n n C1 H12 EDO sing 102 n n O1 HO1 EDO sing 103 n n C2 O2 EDO sing 104 n n C2 H21 EDO sing 105 n n C2 H22 EDO sing 106 n n O2 HO2 EDO sing 107 n n # _atom_sites.entry_id 5VH0 _atom_sites.fract_transf_matrix[1][1] 0.028553 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012988 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.028491 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 8P0 A 1 101 1 8P0 8P0 . F 2 8P0 A 1 102 4 8P0 8P0 . G 3 EDO A 1 103 1 EDO EDO . H 2 8P0 C 1 101 2 8P0 8P0 . I 2 8P0 D 1 101 3 8P0 8P0 . J 4 HOH A 1 201 29 HOH HOH . J 4 HOH A 2 202 63 HOH HOH . J 4 HOH A 3 203 14 HOH HOH . J 4 HOH A 4 204 65 HOH HOH . J 4 HOH A 5 205 94 HOH HOH . J 4 HOH A 6 206 1 HOH HOH . J 4 HOH A 7 207 15 HOH HOH . J 4 HOH A 8 208 23 HOH HOH . J 4 HOH A 9 209 3 HOH HOH . J 4 HOH A 10 210 16 HOH HOH . J 4 HOH A 11 211 51 HOH HOH . J 4 HOH A 12 212 106 HOH HOH . J 4 HOH A 13 213 36 HOH HOH . J 4 HOH A 14 214 43 HOH HOH . J 4 HOH A 15 215 121 HOH HOH . J 4 HOH A 16 216 73 HOH HOH . J 4 HOH A 17 217 41 HOH HOH . J 4 HOH A 18 218 75 HOH HOH . J 4 HOH A 19 219 93 HOH HOH . J 4 HOH A 20 220 56 HOH HOH . J 4 HOH A 21 221 38 HOH HOH . J 4 HOH A 22 222 118 HOH HOH . K 4 HOH B 1 101 85 HOH HOH . K 4 HOH B 2 102 30 HOH HOH . K 4 HOH B 3 103 34 HOH HOH . K 4 HOH B 4 104 81 HOH HOH . K 4 HOH B 5 105 49 HOH HOH . K 4 HOH B 6 106 35 HOH HOH . K 4 HOH B 7 107 32 HOH HOH . K 4 HOH B 8 108 4 HOH HOH . K 4 HOH B 9 109 109 HOH HOH . K 4 HOH B 10 110 2 HOH HOH . K 4 HOH B 11 111 70 HOH HOH . K 4 HOH B 12 112 10 HOH HOH . K 4 HOH B 13 113 13 HOH HOH . K 4 HOH B 14 114 59 HOH HOH . K 4 HOH B 15 115 67 HOH HOH . K 4 HOH B 16 116 39 HOH HOH . K 4 HOH B 17 117 105 HOH HOH . K 4 HOH B 18 118 110 HOH HOH . K 4 HOH B 19 119 87 HOH HOH . K 4 HOH B 20 120 116 HOH HOH . K 4 HOH B 21 121 101 HOH HOH . K 4 HOH B 22 122 111 HOH HOH . K 4 HOH B 23 123 86 HOH HOH . K 4 HOH B 24 124 24 HOH HOH . K 4 HOH B 25 125 17 HOH HOH . K 4 HOH B 26 126 33 HOH HOH . K 4 HOH B 27 127 72 HOH HOH . K 4 HOH B 28 128 100 HOH HOH . K 4 HOH B 29 129 113 HOH HOH . K 4 HOH B 30 130 61 HOH HOH . L 4 HOH C 1 201 21 HOH HOH . L 4 HOH C 2 202 79 HOH HOH . L 4 HOH C 3 203 47 HOH HOH . L 4 HOH C 4 204 28 HOH HOH . L 4 HOH C 5 205 9 HOH HOH . L 4 HOH C 6 206 12 HOH HOH . L 4 HOH C 7 207 84 HOH HOH . L 4 HOH C 8 208 25 HOH HOH . L 4 HOH C 9 209 76 HOH HOH . L 4 HOH C 10 210 37 HOH HOH . L 4 HOH C 11 211 27 HOH HOH . L 4 HOH C 12 212 57 HOH HOH . L 4 HOH C 13 213 89 HOH HOH . L 4 HOH C 14 214 7 HOH HOH . L 4 HOH C 15 215 117 HOH HOH . L 4 HOH C 16 216 53 HOH HOH . L 4 HOH C 17 217 42 HOH HOH . L 4 HOH C 18 218 96 HOH HOH . L 4 HOH C 19 219 120 HOH HOH . L 4 HOH C 20 220 119 HOH HOH . L 4 HOH C 21 221 71 HOH HOH . L 4 HOH C 22 222 22 HOH HOH . L 4 HOH C 23 223 115 HOH HOH . L 4 HOH C 24 224 90 HOH HOH . L 4 HOH C 25 225 8 HOH HOH . L 4 HOH C 26 226 69 HOH HOH . L 4 HOH C 27 227 122 HOH HOH . M 4 HOH D 1 201 104 HOH HOH . M 4 HOH D 2 202 11 HOH HOH . M 4 HOH D 3 203 82 HOH HOH . M 4 HOH D 4 204 20 HOH HOH . M 4 HOH D 5 205 40 HOH HOH . M 4 HOH D 6 206 91 HOH HOH . M 4 HOH D 7 207 45 HOH HOH . M 4 HOH D 8 208 18 HOH HOH . M 4 HOH D 9 209 31 HOH HOH . M 4 HOH D 10 210 5 HOH HOH . M 4 HOH D 11 211 50 HOH HOH . M 4 HOH D 12 212 52 HOH HOH . M 4 HOH D 13 213 44 HOH HOH . M 4 HOH D 14 214 97 HOH HOH . M 4 HOH D 15 215 80 HOH HOH . M 4 HOH D 16 216 46 HOH HOH . M 4 HOH D 17 217 19 HOH HOH . M 4 HOH D 18 218 55 HOH HOH . M 4 HOH D 19 219 88 HOH HOH . M 4 HOH D 20 220 26 HOH HOH . M 4 HOH D 21 221 77 HOH HOH . M 4 HOH D 22 222 64 HOH HOH . M 4 HOH D 23 223 78 HOH HOH . M 4 HOH D 24 224 48 HOH HOH . M 4 HOH D 25 225 68 HOH HOH . M 4 HOH D 26 226 6 HOH HOH . M 4 HOH D 27 227 112 HOH HOH . M 4 HOH D 28 228 83 HOH HOH . M 4 HOH D 29 229 74 HOH HOH . M 4 HOH D 30 230 58 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . G 3 41.968 57.984 -11.231 0.84 42.27 ? C1 EDO 103 A 1 HETATM 2 O O1 EDO . . . G 3 40.581 58.103 -10.904 0.84 41.88 ? O1 EDO 103 A 1 HETATM 3 C C2 EDO . . . G 3 42.152 57.03 -12.407 0.84 42.4 ? C2 EDO 103 A 1 HETATM 4 O O2 EDO . . . G 3 40.947 56.94 -13.175 0.84 41.86 ? O2 EDO 103 A 1 HETATM 5 H H11 EDO . . . G 3 42.37 58.967 -11.489 0.84 50.73 ? H11 EDO 103 A 1 HETATM 6 H H12 EDO . . . G 3 42.519 57.61 -10.365 0.84 50.73 ? H12 EDO 103 A 1 HETATM 7 H HO1 EDO . . . G 3 40.476 58.71 -10.158 0.84 50.26 ? HO1 EDO 103 A 1 HETATM 8 H H21 EDO . . . G 3 42.965 57.385 -13.043 0.84 50.88 ? H21 EDO 103 A 1 HETATM 9 H H22 EDO . . . G 3 42.423 56.039 -12.035 0.84 50.88 ? H22 EDO 103 A 1 HETATM 10 H HO2 EDO . . . G 3 41.081 56.332 -13.915 0.84 50.23 ? HO2 EDO 103 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 10 #