data_5VIB
#
_model_server_result.job_id            9OvmJdAVgjZE-Xf1AXCsew 
_model_server_result.datetime_utc      '2024-12-27 06:31:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5vib 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":401}' 
#
_entry.id    5VIB 
#
_exptl.entry_id    5VIB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              430.565 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            3-({[6-(pyridin-4-yl)-1,3-benzothiazol-2-yl][2-(pyrrolidin-1-yl)ethyl]amino}methyl)phenol 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5VIB 
_cell.length_a            69.857 
_cell.length_b            72.96 
_cell.length_c            77.348 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5VIB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C TRP 197 A TRP 197 1_555 A N TPO 198 A TPO 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? 
covale ? covale2 A C TPO 198 A TPO 198 1_555 A N LEU 199 A LEU 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? 
#
_chem_comp.formula           'C25 H26 N4 O S' 
_chem_comp.formula_weight    430.565 
_chem_comp.id                9D1 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              3-({[6-(pyridin-4-yl)-1,3-benzothiazol-2-yl][2-(pyrrolidin-1-yl)ethyl]amino}methyl)phenol 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C24 C23 9D1 doub 1 n y 
C24 C 9D1 sing 2 n y 
C23 C22 9D1 sing 3 n y 
O C 9D1 sing 4 n n 
C C1 9D1 doub 5 n y 
C22 C2 9D1 doub 6 n y 
C1 C2 9D1 sing 7 n y 
C2 C3 9D1 sing 8 n n 
C19 N3 9D1 doub 9 n y 
C19 C18 9D1 sing 10 n y 
N3 C20 9D1 sing 11 n y 
C18 C17 9D1 doub 12 n y 
C20 C21 9D1 doub 13 n y 
C17 C21 9D1 sing 14 n y 
C17 C14 9D1 sing 15 n n 
C13 C14 9D1 doub 16 n y 
C13 C12 9D1 sing 17 n y 
C14 C15 9D1 sing 18 n y 
C12 C11 9D1 doub 19 n y 
C15 C16 9D1 doub 20 n y 
C11 C16 9D1 sing 21 n y 
C11 N2 9D1 sing 22 n y 
C16 S 9D1 sing 23 n y 
N2 C10 9D1 doub 24 n y 
C3 N 9D1 sing 25 n n 
S C10 9D1 sing 26 n y 
C10 N 9D1 sing 27 n n 
N C4 9D1 sing 28 n n 
C4 C5 9D1 sing 29 n n 
C5 N1 9D1 sing 30 n n 
N1 C6 9D1 sing 31 n n 
N1 C9 9D1 sing 32 n n 
C6 C7 9D1 sing 33 n n 
C7 C8 9D1 sing 34 n n 
C9 C8 9D1 sing 35 n n 
C4 H2 9D1 sing 36 n n 
C4 H3 9D1 sing 37 n n 
C5 H4 9D1 sing 38 n n 
C5 H5 9D1 sing 39 n n 
C6 H6 9D1 sing 40 n n 
C6 H7 9D1 sing 41 n n 
C7 H8 9D1 sing 42 n n 
C7 H9 9D1 sing 43 n n 
C8 H10 9D1 sing 44 n n 
C8 H11 9D1 sing 45 n n 
C13 H12 9D1 sing 46 n n 
C15 H13 9D1 sing 47 n n 
C20 H14 9D1 sing 48 n n 
C21 H15 9D1 sing 49 n n 
C22 H16 9D1 sing 50 n n 
C24 H17 9D1 sing 51 n n 
O H18 9D1 sing 52 n n 
C23 H19 9D1 sing 53 n n 
C1 H20 9D1 sing 54 n n 
C3 H21 9D1 sing 55 n n 
C3 H22 9D1 sing 56 n n 
C9 H23 9D1 sing 57 n n 
C9 H24 9D1 sing 58 n n 
C12 H25 9D1 sing 59 n n 
C19 H26 9D1 sing 60 n n 
C18 H27 9D1 sing 61 n n 
#
_atom_sites.entry_id                     5VIB 
_atom_sites.fract_transf_matrix[1][1]    0.014315 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013706 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012929 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 9D1 A 1 401 401 9D1 9D1 . 
D 4 HOH A 1 501 501 HOH HOH . 
D 4 HOH A 2 502 502 HOH HOH . 
D 4 HOH A 3 503 503 HOH HOH . 
D 4 HOH A 4 504 504 HOH HOH . 
D 4 HOH A 5 505 505 HOH HOH . 
D 4 HOH A 6 506 506 HOH HOH . 
D 4 HOH A 7 507 507 HOH HOH . 
D 4 HOH A 8 508 508 HOH HOH . 
D 4 HOH A 9 509 509 HOH HOH . 
D 4 HOH A 10 510 510 HOH HOH . 
D 4 HOH A 11 511 511 HOH HOH . 
D 4 HOH A 12 512 512 HOH HOH . 
D 4 HOH A 13 513 513 HOH HOH . 
D 4 HOH A 14 514 514 HOH HOH . 
D 4 HOH A 15 515 515 HOH HOH . 
D 4 HOH A 16 516 516 HOH HOH . 
D 4 HOH A 17 517 517 HOH HOH . 
D 4 HOH A 18 518 518 HOH HOH . 
D 4 HOH A 19 519 519 HOH HOH . 
D 4 HOH A 20 520 520 HOH HOH . 
D 4 HOH A 21 521 521 HOH HOH . 
D 4 HOH A 22 522 522 HOH HOH . 
D 4 HOH A 23 523 523 HOH HOH . 
D 4 HOH A 24 524 524 HOH HOH . 
D 4 HOH A 25 525 525 HOH HOH . 
D 4 HOH A 26 526 526 HOH HOH . 
D 4 HOH A 27 527 527 HOH HOH . 
D 4 HOH A 28 528 528 HOH HOH . 
D 4 HOH A 29 529 529 HOH HOH . 
D 4 HOH A 30 530 530 HOH HOH . 
D 4 HOH A 31 531 531 HOH HOH . 
D 4 HOH A 32 532 532 HOH HOH . 
D 4 HOH A 33 533 533 HOH HOH . 
D 4 HOH A 34 534 534 HOH HOH . 
D 4 HOH A 35 535 535 HOH HOH . 
D 4 HOH A 36 536 536 HOH HOH . 
D 4 HOH A 37 537 537 HOH HOH . 
D 4 HOH A 38 538 538 HOH HOH . 
D 4 HOH A 39 539 539 HOH HOH . 
D 4 HOH A 40 540 540 HOH HOH . 
D 4 HOH A 41 541 541 HOH HOH . 
D 4 HOH A 42 542 542 HOH HOH . 
D 4 HOH A 43 543 543 HOH HOH . 
D 4 HOH A 44 544 544 HOH HOH . 
D 4 HOH A 45 545 545 HOH HOH . 
D 4 HOH A 46 546 546 HOH HOH . 
D 4 HOH A 47 547 547 HOH HOH . 
D 4 HOH A 48 548 548 HOH HOH . 
D 4 HOH A 49 549 549 HOH HOH . 
D 4 HOH A 50 550 550 HOH HOH . 
D 4 HOH A 51 551 551 HOH HOH . 
D 4 HOH A 52 552 552 HOH HOH . 
D 4 HOH A 53 553 553 HOH HOH . 
D 4 HOH A 54 554 554 HOH HOH . 
D 4 HOH A 55 555 555 HOH HOH . 
D 4 HOH A 56 556 556 HOH HOH . 
D 4 HOH A 57 557 557 HOH HOH . 
D 4 HOH A 58 558 558 HOH HOH . 
D 4 HOH A 59 559 559 HOH HOH . 
D 4 HOH A 60 560 560 HOH HOH . 
D 4 HOH A 61 561 561 HOH HOH . 
D 4 HOH A 62 562 562 HOH HOH . 
D 4 HOH A 63 563 563 HOH HOH . 
D 4 HOH A 64 564 564 HOH HOH . 
D 4 HOH A 65 565 565 HOH HOH . 
D 4 HOH A 66 566 566 HOH HOH . 
D 4 HOH A 67 567 567 HOH HOH . 
D 4 HOH A 68 568 568 HOH HOH . 
D 4 HOH A 69 569 569 HOH HOH . 
D 4 HOH A 70 570 570 HOH HOH . 
D 4 HOH A 71 571 571 HOH HOH . 
D 4 HOH A 72 572 572 HOH HOH . 
D 4 HOH A 73 573 573 HOH HOH . 
D 4 HOH A 74 574 574 HOH HOH . 
D 4 HOH A 75 575 575 HOH HOH . 
D 4 HOH A 76 576 576 HOH HOH . 
D 4 HOH A 77 577 577 HOH HOH . 
D 4 HOH A 78 578 578 HOH HOH . 
D 4 HOH A 79 579 579 HOH HOH . 
D 4 HOH A 80 580 580 HOH HOH . 
D 4 HOH A 81 581 581 HOH HOH . 
D 4 HOH A 82 582 582 HOH HOH . 
D 4 HOH A 83 583 583 HOH HOH . 
D 4 HOH A 84 584 584 HOH HOH . 
D 4 HOH A 85 585 585 HOH HOH . 
D 4 HOH A 86 586 586 HOH HOH . 
D 4 HOH A 87 587 587 HOH HOH . 
D 4 HOH A 88 588 588 HOH HOH . 
D 4 HOH A 89 589 589 HOH HOH . 
D 4 HOH A 90 590 590 HOH HOH . 
D 4 HOH A 91 591 591 HOH HOH . 
D 4 HOH A 92 592 592 HOH HOH . 
D 4 HOH A 93 593 593 HOH HOH . 
D 4 HOH A 94 594 594 HOH HOH . 
D 4 HOH A 95 595 595 HOH HOH . 
D 4 HOH A 96 596 596 HOH HOH . 
D 4 HOH A 97 597 597 HOH HOH . 
D 4 HOH A 98 598 598 HOH HOH . 
D 4 HOH A 99 599 599 HOH HOH . 
D 4 HOH A 100 600 600 HOH HOH . 
D 4 HOH A 101 601 601 HOH HOH . 
D 4 HOH A 102 602 602 HOH HOH . 
D 4 HOH A 103 603 603 HOH HOH . 
D 4 HOH A 104 604 604 HOH HOH . 
D 4 HOH A 105 605 605 HOH HOH . 
D 4 HOH A 106 606 606 HOH HOH . 
D 4 HOH A 107 607 607 HOH HOH . 
D 4 HOH A 108 608 608 HOH HOH . 
D 4 HOH A 109 609 609 HOH HOH . 
D 4 HOH A 110 610 610 HOH HOH . 
D 4 HOH A 111 611 611 HOH HOH . 
D 4 HOH A 112 612 612 HOH HOH . 
D 4 HOH A 113 613 613 HOH HOH . 
D 4 HOH A 114 614 614 HOH HOH . 
D 4 HOH A 115 615 615 HOH HOH . 
D 4 HOH A 116 616 616 HOH HOH . 
D 4 HOH A 117 617 617 HOH HOH . 
D 4 HOH A 118 618 618 HOH HOH . 
D 4 HOH A 119 619 619 HOH HOH . 
D 4 HOH A 120 620 620 HOH HOH . 
D 4 HOH A 121 621 621 HOH HOH . 
D 4 HOH A 122 622 622 HOH HOH . 
D 4 HOH A 123 623 623 HOH HOH . 
D 4 HOH A 124 624 624 HOH HOH . 
D 4 HOH A 125 625 625 HOH HOH . 
D 4 HOH A 126 626 626 HOH HOH . 
D 4 HOH A 127 627 627 HOH HOH . 
D 4 HOH A 128 628 628 HOH HOH . 
D 4 HOH A 129 629 629 HOH HOH . 
D 4 HOH A 130 630 630 HOH HOH . 
D 4 HOH A 131 631 631 HOH HOH . 
D 4 HOH A 132 632 632 HOH HOH . 
D 4 HOH A 133 633 633 HOH HOH . 
D 4 HOH A 134 634 634 HOH HOH . 
D 4 HOH A 135 635 635 HOH HOH . 
D 4 HOH A 136 636 636 HOH HOH . 
D 4 HOH A 137 637 637 HOH HOH . 
D 4 HOH A 138 638 638 HOH HOH . 
D 4 HOH A 139 639 639 HOH HOH . 
D 4 HOH A 140 640 640 HOH HOH . 
D 4 HOH A 141 641 641 HOH HOH . 
D 4 HOH A 142 642 642 HOH HOH . 
D 4 HOH A 143 643 643 HOH HOH . 
D 4 HOH A 144 644 644 HOH HOH . 
E 4 HOH B 1 101 101 HOH HOH . 
E 4 HOH B 2 102 102 HOH HOH . 
E 4 HOH B 3 103 103 HOH HOH . 
E 4 HOH B 4 104 104 HOH HOH . 
E 4 HOH B 5 105 105 HOH HOH . 
E 4 HOH B 6 106 106 HOH HOH . 
E 4 HOH B 7 107 107 HOH HOH . 
E 4 HOH B 8 108 108 HOH HOH . 
E 4 HOH B 9 109 109 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 9D1 . . . C 3 2.279 13.598 11.69 1 61.62 ? N1 9D1 401 A 1 
HETATM 2 N N3 9D1 . . . C 3 12.767 9.363 7.537 1 44.36 ? N3 9D1 401 A 1 
HETATM 3 C C4 9D1 . . . C 3 2.393 13.551 9.07 1 56.74 ? C4 9D1 401 A 1 
HETATM 4 C C5 9D1 . . . C 3 1.621 13.835 10.392 1 59.29 ? C5 9D1 401 A 1 
HETATM 5 C C6 9D1 . . . C 3 2.759 12.217 11.948 1 62.19 ? C6 9D1 401 A 1 
HETATM 6 C C7 9D1 . . . C 3 1.663 11.519 12.746 1 62.79 ? C7 9D1 401 A 1 
HETATM 7 C C8 9D1 . . . C 3 0.923 12.658 13.465 1 61.06 ? C8 9D1 401 A 1 
HETATM 8 C C10 9D1 . . . C 3 4.917 13.829 8.584 1 54.72 ? C10 9D1 401 A 1 
HETATM 9 C C13 9D1 . . . C 3 9.475 13.401 7.809 1 55.72 ? C13 9D1 401 A 1 
HETATM 10 C C15 9D1 . . . C 3 7.997 11.463 8.145 1 55.21 ? C15 9D1 401 A 1 
HETATM 11 C C17 9D1 . . . C 3 10.496 11.06 7.703 1 49.74 ? C17 9D1 401 A 1 
HETATM 12 C C20 9D1 . . . C 3 12.878 10.686 7.656 1 41.34 ? C20 9D1 401 A 1 
HETATM 13 C C21 9D1 . . . C 3 11.818 11.556 7.723 1 43.48 ? C21 9D1 401 A 1 
HETATM 14 C C22 9D1 . . . C 3 3.327 15.105 5.935 1 49.49 ? C22 9D1 401 A 1 
HETATM 15 C C24 9D1 . . . C 3 2.313 16.558 4.314 1 51.55 ? C24 9D1 401 A 1 
HETATM 16 O O 9D1 . . . C 3 1.358 18.602 5.169 1 56.58 ? O 9D1 401 A 1 
HETATM 17 C C 9D1 . . . C 3 2.006 17.446 5.349 1 52.23 ? C 9D1 401 A 1 
HETATM 18 C C23 9D1 . . . C 3 2.979 15.382 4.626 1 49.08 ? C23 9D1 401 A 1 
HETATM 19 C C2 9D1 . . . C 3 3.014 16.042 6.971 1 48.7 ? C2 9D1 401 A 1 
HETATM 20 C C1 9D1 . . . C 3 2.362 17.202 6.668 1 50.32 ? C1 9D1 401 A 1 
HETATM 21 C C3 9D1 . . . C 3 3.394 15.766 8.394 1 48.6 ? C3 9D1 401 A 1 
HETATM 22 N N 9D1 . . . C 3 3.612 14.35 8.732 1 53.13 ? N 9D1 401 A 1 
HETATM 23 C C9 9D1 . . . C 3 1.447 13.958 12.865 1 60.12 ? C9 9D1 401 A 1 
HETATM 24 S S 9D1 . . . C 3 5.264 12.058 8.574 1 53.55 ? S 9D1 401 A 1 
HETATM 25 C C16 9D1 . . . C 3 6.934 12.374 8.31 1 55.97 ? C16 9D1 401 A 1 
HETATM 26 C C11 9D1 . . . C 3 7.138 13.771 8.237 1 55.82 ? C11 9D1 401 A 1 
HETATM 27 N N2 9D1 . . . C 3 6.017 14.584 8.391 1 54.85 ? N2 9D1 401 A 1 
HETATM 28 C C14 9D1 . . . C 3 9.308 11.976 7.89 1 53.87 ? C14 9D1 401 A 1 
HETATM 29 C C12 9D1 . . . C 3 8.41 14.282 7.985 1 57.41 ? C12 9D1 401 A 1 
HETATM 30 C C19 9D1 . . . C 3 11.527 8.862 7.47 1 47.6 ? C19 9D1 401 A 1 
HETATM 31 C C18 9D1 . . . C 3 10.358 9.644 7.562 1 49.37 ? C18 9D1 401 A 1 
#
_model_server_stats.io_time_ms              28 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           293 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           31 
#