data_5VIF # _model_server_result.job_id nq6UUVt2IDNuX8RCpzO-5A _model_server_result.datetime_utc '2025-03-13 17:55:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5vif # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":101}' # _entry.id 5VIF # _exptl.entry_id 5VIF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 281.69 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-{[(2E)-4-chlorobut-2-enoyl]amino}-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5VIF _cell.length_a 139.084 _cell.length_b 152.733 _cell.length_c 199.398 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5VIF _symmetry.cell_setting ? _symmetry.Int_Tables_number 22 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'F 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_544 x,-y-1/2,-z-1/2 1 0 0 0 -1 0 0 0 -1 0 -76.3665 -99.699 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id OG _struct_conn.ptnr1_label_comp_id SER _struct_conn.ptnr1_label_seq_id 9 _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id SER _struct_conn.ptnr1_auth_seq_id 21 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id D _struct_conn.ptnr2_label_atom_id C1 _struct_conn.ptnr2_label_comp_id 9C1 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id 9C1 _struct_conn.ptnr2_auth_seq_id 101 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.405 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C10 H16 Cl N O6' _chem_comp.formula_weight 281.69 _chem_comp.id 9C1 _chem_comp.mon_nstd_flag n _chem_comp.name 2-{[(2E)-4-chlorobut-2-enoyl]amino}-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms 2-{[(2E)-4-chlorobut-2-enoyl]amino}-2-deoxy-beta-D-glucose;2-{[(2E)-4-chlorobut-2-enoyl]amino}-2-deoxy-D-glucose;2-{[(2E)-4-chlorobut-2-enoyl]amino}-2-deoxy-glucose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C10 C11 9C1 doub 1 e n C10 C09 9C1 sing 2 n n C11 C12 9C1 sing 3 n n C3 C4 9C1 sing 4 n n C3 C2 9C1 sing 5 n n C3 O3 9C1 sing 6 n n C4 C5 9C1 sing 7 n n C4 O4 9C1 sing 8 n n O14 C09 9C1 doub 9 n n O6 C6 9C1 sing 10 n n C6 C5 9C1 sing 11 n n C5 O5 9C1 sing 12 n n O5 C1 9C1 sing 13 n n C1 C2 9C1 sing 14 n n C2 N2 9C1 sing 15 n n N2 C09 9C1 sing 16 n n C12 CL13 9C1 sing 17 n n C10 H1A 9C1 sing 18 n n C11 H2A 9C1 sing 19 n n C12 H3A 9C1 sing 20 n n C12 H4A 9C1 sing 21 n n C3 H3 9C1 sing 22 n n C4 H4 9C1 sing 23 n n O6 HO6 9C1 sing 24 n n C6 H61 9C1 sing 25 n n C6 H62 9C1 sing 26 n n C5 H5 9C1 sing 27 n n C1 H1 9C1 sing 28 n n C2 H2 9C1 sing 29 n n N2 HN21 9C1 sing 30 n n O3 HO3 9C1 sing 31 n n O4 HO4 9C1 sing 32 n n C1 O1 9C1 sing 33 n n O1 HO1 9C1 sing 34 n n # _atom_sites.entry_id 5VIF _atom_sites.fract_transf_matrix[1][1] 0.00719 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006547 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005015 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 UDP A 1 1100 1100 UDP UDP . D 4 9C1 B 1 101 30 9C1 9CS . E 5 HOH A 1 1201 22 HOH HOH . E 5 HOH A 2 1202 63 HOH HOH . E 5 HOH A 3 1203 16 HOH HOH . E 5 HOH A 4 1204 43 HOH HOH . E 5 HOH A 5 1205 161 HOH HOH . E 5 HOH A 6 1206 102 HOH HOH . E 5 HOH A 7 1207 134 HOH HOH . E 5 HOH A 8 1208 30 HOH HOH . E 5 HOH A 9 1209 121 HOH HOH . E 5 HOH A 10 1210 9 HOH HOH . E 5 HOH A 11 1211 7 HOH HOH . E 5 HOH A 12 1212 136 HOH HOH . E 5 HOH A 13 1213 34 HOH HOH . E 5 HOH A 14 1214 23 HOH HOH . E 5 HOH A 15 1215 57 HOH HOH . E 5 HOH A 16 1216 38 HOH HOH . E 5 HOH A 17 1217 184 HOH HOH . E 5 HOH A 18 1218 170 HOH HOH . E 5 HOH A 19 1219 3 HOH HOH . E 5 HOH A 20 1220 179 HOH HOH . E 5 HOH A 21 1221 82 HOH HOH . E 5 HOH A 22 1222 158 HOH HOH . E 5 HOH A 23 1223 164 HOH HOH . E 5 HOH A 24 1224 6 HOH HOH . E 5 HOH A 25 1225 59 HOH HOH . E 5 HOH A 26 1226 147 HOH HOH . E 5 HOH A 27 1227 162 HOH HOH . E 5 HOH A 28 1228 78 HOH HOH . E 5 HOH A 29 1229 191 HOH HOH . E 5 HOH A 30 1230 108 HOH HOH . E 5 HOH A 31 1231 157 HOH HOH . E 5 HOH A 32 1232 137 HOH HOH . E 5 HOH A 33 1233 33 HOH HOH . E 5 HOH A 34 1234 61 HOH HOH . E 5 HOH A 35 1235 14 HOH HOH . E 5 HOH A 36 1236 92 HOH HOH . E 5 HOH A 37 1237 68 HOH HOH . E 5 HOH A 38 1238 72 HOH HOH . E 5 HOH A 39 1239 99 HOH HOH . E 5 HOH A 40 1240 76 HOH HOH . E 5 HOH A 41 1241 47 HOH HOH . E 5 HOH A 42 1242 182 HOH HOH . E 5 HOH A 43 1243 176 HOH HOH . E 5 HOH A 44 1244 69 HOH HOH . E 5 HOH A 45 1245 26 HOH HOH . E 5 HOH A 46 1246 1 HOH HOH . E 5 HOH A 47 1247 95 HOH HOH . E 5 HOH A 48 1248 167 HOH HOH . E 5 HOH A 49 1249 151 HOH HOH . E 5 HOH A 50 1250 169 HOH HOH . E 5 HOH A 51 1251 129 HOH HOH . E 5 HOH A 52 1252 8 HOH HOH . E 5 HOH A 53 1253 66 HOH HOH . E 5 HOH A 54 1254 45 HOH HOH . E 5 HOH A 55 1255 28 HOH HOH . E 5 HOH A 56 1256 153 HOH HOH . E 5 HOH A 57 1257 46 HOH HOH . E 5 HOH A 58 1258 60 HOH HOH . E 5 HOH A 59 1259 41 HOH HOH . E 5 HOH A 60 1260 98 HOH HOH . E 5 HOH A 61 1261 19 HOH HOH . E 5 HOH A 62 1262 2 HOH HOH . E 5 HOH A 63 1263 20 HOH HOH . E 5 HOH A 64 1264 168 HOH HOH . E 5 HOH A 65 1265 71 HOH HOH . E 5 HOH A 66 1266 89 HOH HOH . E 5 HOH A 67 1267 13 HOH HOH . E 5 HOH A 68 1268 97 HOH HOH . E 5 HOH A 69 1269 17 HOH HOH . E 5 HOH A 70 1270 58 HOH HOH . E 5 HOH A 71 1271 27 HOH HOH . E 5 HOH A 72 1272 173 HOH HOH . E 5 HOH A 73 1273 42 HOH HOH . E 5 HOH A 74 1274 138 HOH HOH . E 5 HOH A 75 1275 70 HOH HOH . E 5 HOH A 76 1276 96 HOH HOH . E 5 HOH A 77 1277 12 HOH HOH . E 5 HOH A 78 1278 190 HOH HOH . E 5 HOH A 79 1279 124 HOH HOH . E 5 HOH A 80 1280 159 HOH HOH . E 5 HOH A 81 1281 40 HOH HOH . E 5 HOH A 82 1282 32 HOH HOH . E 5 HOH A 83 1283 165 HOH HOH . E 5 HOH A 84 1284 5 HOH HOH . E 5 HOH A 85 1285 79 HOH HOH . E 5 HOH A 86 1286 84 HOH HOH . E 5 HOH A 87 1287 4 HOH HOH . E 5 HOH A 88 1288 166 HOH HOH . E 5 HOH A 89 1289 35 HOH HOH . E 5 HOH A 90 1290 81 HOH HOH . E 5 HOH A 91 1291 64 HOH HOH . E 5 HOH A 92 1292 163 HOH HOH . E 5 HOH A 93 1293 117 HOH HOH . E 5 HOH A 94 1294 24 HOH HOH . E 5 HOH A 95 1295 105 HOH HOH . E 5 HOH A 96 1296 106 HOH HOH . E 5 HOH A 97 1297 156 HOH HOH . E 5 HOH A 98 1298 29 HOH HOH . E 5 HOH A 99 1299 53 HOH HOH . E 5 HOH A 100 1300 18 HOH HOH . E 5 HOH A 101 1301 48 HOH HOH . E 5 HOH A 102 1302 11 HOH HOH . E 5 HOH A 103 1303 116 HOH HOH . E 5 HOH A 104 1304 178 HOH HOH . E 5 HOH A 105 1305 37 HOH HOH . E 5 HOH A 106 1306 50 HOH HOH . E 5 HOH A 107 1307 86 HOH HOH . E 5 HOH A 108 1308 111 HOH HOH . E 5 HOH A 109 1309 112 HOH HOH . E 5 HOH A 110 1310 180 HOH HOH . E 5 HOH A 111 1311 130 HOH HOH . E 5 HOH A 112 1312 125 HOH HOH . E 5 HOH A 113 1313 93 HOH HOH . E 5 HOH A 114 1314 131 HOH HOH . E 5 HOH A 115 1315 10 HOH HOH . E 5 HOH A 116 1316 39 HOH HOH . E 5 HOH A 117 1317 100 HOH HOH . E 5 HOH A 118 1318 107 HOH HOH . E 5 HOH A 119 1319 94 HOH HOH . E 5 HOH A 120 1320 103 HOH HOH . E 5 HOH A 121 1321 110 HOH HOH . E 5 HOH A 122 1322 56 HOH HOH . E 5 HOH A 123 1323 65 HOH HOH . E 5 HOH A 124 1324 175 HOH HOH . E 5 HOH A 125 1325 75 HOH HOH . E 5 HOH A 126 1326 52 HOH HOH . E 5 HOH A 127 1327 101 HOH HOH . E 5 HOH A 128 1328 142 HOH HOH . E 5 HOH A 129 1329 73 HOH HOH . E 5 HOH A 130 1330 149 HOH HOH . E 5 HOH A 131 1331 172 HOH HOH . E 5 HOH A 132 1332 51 HOH HOH . E 5 HOH A 133 1333 113 HOH HOH . E 5 HOH A 134 1334 160 HOH HOH . E 5 HOH A 135 1335 83 HOH HOH . E 5 HOH A 136 1336 115 HOH HOH . E 5 HOH A 137 1337 123 HOH HOH . E 5 HOH A 138 1338 36 HOH HOH . E 5 HOH A 139 1339 188 HOH HOH . E 5 HOH A 140 1340 139 HOH HOH . E 5 HOH A 141 1341 77 HOH HOH . E 5 HOH A 142 1342 90 HOH HOH . E 5 HOH A 143 1343 143 HOH HOH . E 5 HOH A 144 1344 189 HOH HOH . E 5 HOH A 145 1345 185 HOH HOH . E 5 HOH A 146 1346 44 HOH HOH . E 5 HOH A 147 1347 74 HOH HOH . E 5 HOH A 148 1348 85 HOH HOH . E 5 HOH A 149 1349 135 HOH HOH . E 5 HOH A 150 1350 140 HOH HOH . E 5 HOH A 151 1351 62 HOH HOH . E 5 HOH A 152 1352 88 HOH HOH . E 5 HOH A 153 1353 154 HOH HOH . E 5 HOH A 154 1354 171 HOH HOH . E 5 HOH A 155 1355 25 HOH HOH . E 5 HOH A 156 1356 146 HOH HOH . E 5 HOH A 157 1357 148 HOH HOH . E 5 HOH A 158 1358 183 HOH HOH . E 5 HOH A 159 1359 109 HOH HOH . E 5 HOH A 160 1360 177 HOH HOH . E 5 HOH A 161 1361 114 HOH HOH . E 5 HOH A 162 1362 128 HOH HOH . E 5 HOH A 163 1363 186 HOH HOH . E 5 HOH A 164 1364 174 HOH HOH . E 5 HOH A 165 1365 132 HOH HOH . E 5 HOH A 166 1366 91 HOH HOH . E 5 HOH A 167 1367 133 HOH HOH . E 5 HOH A 168 1368 118 HOH HOH . E 5 HOH A 169 1369 120 HOH HOH . E 5 HOH A 170 1370 80 HOH HOH . E 5 HOH A 171 1371 150 HOH HOH . E 5 HOH A 172 1372 104 HOH HOH . E 5 HOH A 173 1373 155 HOH HOH . E 5 HOH A 174 1374 126 HOH HOH . E 5 HOH A 175 1375 152 HOH HOH . E 5 HOH A 176 1376 181 HOH HOH . E 5 HOH A 177 1377 55 HOH HOH . E 5 HOH A 178 1378 127 HOH HOH . E 5 HOH A 179 1379 187 HOH HOH . E 5 HOH A 180 1380 21 HOH HOH . E 5 HOH A 181 1381 141 HOH HOH . E 5 HOH A 182 1382 119 HOH HOH . F 5 HOH B 1 201 31 HOH HOH . F 5 HOH B 2 202 15 HOH HOH . F 5 HOH B 3 203 87 HOH HOH . F 5 HOH B 4 204 49 HOH HOH . F 5 HOH B 5 205 122 HOH HOH . F 5 HOH B 6 206 144 HOH HOH . F 5 HOH B 7 207 145 HOH HOH . F 5 HOH B 8 208 54 HOH HOH . F 5 HOH B 9 209 67 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 9C1 . . . D 4 8.428 -51.979 -29.86 1 80.59 ? C10 9C1 101 B 1 HETATM 2 C C11 9C1 . . . D 4 7.604 -52.796 -30.603 1 98.13 ? C11 9C1 101 B 1 HETATM 3 C C12 9C1 . . . D 4 6.095 -52.973 -30.61 1 117.05 ? C12 9C1 101 B 1 HETATM 4 C C3 9C1 . . . D 4 13.466 -52.138 -28.817 1 64.04 ? C3 9C1 101 B 1 HETATM 5 C C4 9C1 . . . D 4 14.907 -52.225 -29.388 1 59.99 ? C4 9C1 101 B 1 HETATM 6 O O14 9C1 . . . D 4 10.316 -52.673 -31.178 1 92.8 ? O14 9C1 101 B 1 HETATM 7 O O6 9C1 . . . D 4 16.8 -51.217 -31.696 1 50.23 ? O6 9C1 101 B 1 HETATM 8 C C6 9C1 . . . D 4 16.81 -50.747 -30.323 1 60.61 ? C6 9C1 101 B 1 HETATM 9 C C5 9C1 . . . D 4 15.358 -50.69 -29.653 1 53.02 ? C5 9C1 101 B 1 HETATM 10 O O5 9C1 . . . D 4 14.408 -49.883 -30.456 1 72.87 ? O5 9C1 101 B 1 HETATM 11 C C1 9C1 . . . D 4 13.038 -50.331 -30.801 1 56.84 ? C1 9C1 101 B 1 HETATM 12 C C2 9C1 . . . D 4 12.442 -51.684 -29.961 1 56.61 ? C2 9C1 101 B 1 HETATM 13 N N2 9C1 . . . D 4 11.04 -51.455 -29.437 1 71.75 ? N2 9C1 101 B 1 HETATM 14 C C09 9C1 . . . D 4 9.946 -52.025 -30.148 1 81.85 ? C09 9C1 101 B 1 HETATM 15 CL CL13 9C1 . . . D 4 5.429 -53.151 -32.515 1 123.25 ? CL13 9C1 101 B 1 HETATM 16 O O3 9C1 . . . D 4 13.086 -53.466 -28.406 1 49.66 ? O3 9C1 101 B 1 HETATM 17 O O4 9C1 . . . D 4 15.695 -52.703 -28.273 1 46.66 ? O4 9C1 101 B 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 247 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 17 #