data_5VIH
#
_model_server_result.job_id            2npcWC3ot0MyeY3SopFg9Q 
_model_server_result.datetime_utc      '2024-11-08 03:09:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5vih 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1001}' 
#
_entry.id    5VIH 
#
_exptl.entry_id    5VIH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              75.067 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5VIH 
_cell.length_a            54.736 
_cell.length_b            87.221 
_cell.length_c            122.277 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5VIH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 28 A CYS 28 1_555 A SG CYS 62 A CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf2 A SG CYS 44 A CYS 44 1_555 A SG CYS 63 A CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf3 B SG CYS 29 B CYS 32 1_555 B SG CYS 55 B CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf4 B SG CYS 36 B CYS 39 1_555 B SG CYS 56 B CYS 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf5 B SG CYS 226 B CYS 229 1_555 B SG CYS 281 B CYS 284 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
#
_chem_comp.formula           'C2 H5 N O2' 
_chem_comp.formula_weight    75.067 
_chem_comp.id                GLY 
_chem_comp.mon_nstd_flag     y 
_chem_comp.name              GLYCINE 
_chem_comp.type              'peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA GLY sing 154 n n 
N H GLY sing 155 n n 
N H2 GLY sing 156 n n 
CA C GLY sing 157 n n 
CA HA2 GLY sing 158 n n 
CA HA3 GLY sing 159 n n 
C O GLY doub 160 n n 
C OXT GLY sing 161 n n 
OXT HXT GLY sing 162 n n 
#
_atom_sites.entry_id                     5VIH 
_atom_sites.fract_transf_matrix[1][1]    0.01827 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011465 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008178 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 GLY A 1 1001 1001 GLY GLY . 
D 4 5DZ B 1 301 286 5DZ ST6 . 
E 5 PEG B 1 302 287 PEG PEG . 
F 6 HOH A 1 1101 1048 HOH HOH . 
F 6 HOH A 2 1102 1053 HOH HOH . 
F 6 HOH A 3 1103 1092 HOH HOH . 
F 6 HOH A 4 1104 1069 HOH HOH . 
F 6 HOH A 5 1105 1031 HOH HOH . 
F 6 HOH A 6 1106 1096 HOH HOH . 
F 6 HOH A 7 1107 1103 HOH HOH . 
F 6 HOH A 8 1108 1100 HOH HOH . 
F 6 HOH A 9 1109 1073 HOH HOH . 
F 6 HOH A 10 1110 1021 HOH HOH . 
F 6 HOH A 11 1111 1107 HOH HOH . 
F 6 HOH A 12 1112 1002 HOH HOH . 
F 6 HOH A 13 1113 1102 HOH HOH . 
F 6 HOH A 14 1114 1110 HOH HOH . 
F 6 HOH A 15 1115 1044 HOH HOH . 
F 6 HOH A 16 1116 1070 HOH HOH . 
F 6 HOH A 17 1117 1055 HOH HOH . 
F 6 HOH A 18 1118 1066 HOH HOH . 
F 6 HOH A 19 1119 1014 HOH HOH . 
F 6 HOH A 20 1120 1057 HOH HOH . 
F 6 HOH A 21 1121 1010 HOH HOH . 
F 6 HOH A 22 1122 1090 HOH HOH . 
F 6 HOH A 23 1123 1111 HOH HOH . 
F 6 HOH A 24 1124 1022 HOH HOH . 
F 6 HOH A 25 1125 1050 HOH HOH . 
F 6 HOH A 26 1126 1078 HOH HOH . 
F 6 HOH A 27 1127 1097 HOH HOH . 
F 6 HOH A 28 1128 1105 HOH HOH . 
F 6 HOH A 29 1129 1041 HOH HOH . 
F 6 HOH A 30 1130 1019 HOH HOH . 
F 6 HOH A 31 1131 1079 HOH HOH . 
F 6 HOH A 32 1132 1067 HOH HOH . 
F 6 HOH A 33 1133 1036 HOH HOH . 
F 6 HOH A 34 1134 1108 HOH HOH . 
F 6 HOH A 35 1135 1013 HOH HOH . 
F 6 HOH A 36 1136 1072 HOH HOH . 
F 6 HOH A 37 1137 1051 HOH HOH . 
F 6 HOH A 38 1138 1060 HOH HOH . 
F 6 HOH A 39 1139 1061 HOH HOH . 
F 6 HOH A 40 1140 1006 HOH HOH . 
F 6 HOH A 41 1141 1074 HOH HOH . 
F 6 HOH A 42 1142 1025 HOH HOH . 
F 6 HOH A 43 1143 1018 HOH HOH . 
F 6 HOH A 44 1144 1065 HOH HOH . 
F 6 HOH A 45 1145 1094 HOH HOH . 
F 6 HOH A 46 1146 1004 HOH HOH . 
F 6 HOH A 47 1147 1016 HOH HOH . 
F 6 HOH A 48 1148 1083 HOH HOH . 
F 6 HOH A 49 1149 1015 HOH HOH . 
F 6 HOH A 50 1150 1085 HOH HOH . 
F 6 HOH A 51 1151 1005 HOH HOH . 
F 6 HOH A 52 1152 1024 HOH HOH . 
F 6 HOH A 53 1153 1082 HOH HOH . 
F 6 HOH A 54 1154 1059 HOH HOH . 
F 6 HOH A 55 1155 1064 HOH HOH . 
F 6 HOH A 56 1156 1071 HOH HOH . 
F 6 HOH A 57 1157 1033 HOH HOH . 
F 6 HOH A 58 1158 1008 HOH HOH . 
F 6 HOH A 59 1159 1077 HOH HOH . 
F 6 HOH A 60 1160 1112 HOH HOH . 
F 6 HOH A 61 1161 1032 HOH HOH . 
F 6 HOH A 62 1162 1035 HOH HOH . 
F 6 HOH A 63 1163 1054 HOH HOH . 
F 6 HOH A 64 1164 1017 HOH HOH . 
F 6 HOH A 65 1165 1027 HOH HOH . 
F 6 HOH A 66 1166 1040 HOH HOH . 
F 6 HOH A 67 1167 1037 HOH HOH . 
F 6 HOH A 68 1168 1026 HOH HOH . 
F 6 HOH A 69 1169 1042 HOH HOH . 
F 6 HOH A 70 1170 1109 HOH HOH . 
F 6 HOH A 71 1171 1009 HOH HOH . 
F 6 HOH A 72 1172 1047 HOH HOH . 
F 6 HOH A 73 1173 1114 HOH HOH . 
F 6 HOH A 74 1174 1028 HOH HOH . 
F 6 HOH A 75 1175 1088 HOH HOH . 
F 6 HOH A 76 1176 1075 HOH HOH . 
F 6 HOH A 77 1177 1056 HOH HOH . 
F 6 HOH A 78 1178 1076 HOH HOH . 
F 6 HOH A 79 1179 1038 HOH HOH . 
F 6 HOH A 80 1180 1084 HOH HOH . 
F 6 HOH A 81 1181 1012 HOH HOH . 
F 6 HOH A 82 1182 1058 HOH HOH . 
F 6 HOH A 83 1183 1062 HOH HOH . 
F 6 HOH A 84 1184 1063 HOH HOH . 
F 6 HOH A 85 1185 1039 HOH HOH . 
F 6 HOH A 86 1186 1099 HOH HOH . 
F 6 HOH A 87 1187 1098 HOH HOH . 
F 6 HOH A 88 1188 1113 HOH HOH . 
F 6 HOH A 89 1189 1020 HOH HOH . 
F 6 HOH A 90 1190 1095 HOH HOH . 
F 6 HOH A 91 1191 1052 HOH HOH . 
F 6 HOH A 92 1192 1046 HOH HOH . 
F 6 HOH A 93 1193 296 HOH HOH . 
F 6 HOH A 94 1194 1093 HOH HOH . 
F 6 HOH A 95 1195 1089 HOH HOH . 
F 6 HOH A 96 1196 1106 HOH HOH . 
F 6 HOH A 97 1197 1068 HOH HOH . 
F 6 HOH A 98 1198 1081 HOH HOH . 
F 6 HOH A 99 1199 1043 HOH HOH . 
F 6 HOH A 100 1200 1086 HOH HOH . 
F 6 HOH A 101 1201 1091 HOH HOH . 
F 6 HOH A 102 1202 1011 HOH HOH . 
F 6 HOH A 103 1203 1023 HOH HOH . 
F 6 HOH A 104 1204 331 HOH HOH . 
F 6 HOH A 105 1205 1080 HOH HOH . 
F 6 HOH A 106 1206 1029 HOH HOH . 
F 6 HOH A 107 1207 1101 HOH HOH . 
F 6 HOH A 108 1208 1087 HOH HOH . 
F 6 HOH A 109 1209 1104 HOH HOH . 
F 6 HOH A 110 1210 1030 HOH HOH . 
F 6 HOH A 111 1211 1045 HOH HOH . 
G 6 HOH B 1 401 335 HOH HOH . 
G 6 HOH B 2 402 373 HOH HOH . 
G 6 HOH B 3 403 344 HOH HOH . 
G 6 HOH B 4 404 366 HOH HOH . 
G 6 HOH B 5 405 298 HOH HOH . 
G 6 HOH B 6 406 347 HOH HOH . 
G 6 HOH B 7 407 306 HOH HOH . 
G 6 HOH B 8 408 327 HOH HOH . 
G 6 HOH B 9 409 395 HOH HOH . 
G 6 HOH B 10 410 343 HOH HOH . 
G 6 HOH B 11 411 308 HOH HOH . 
G 6 HOH B 12 412 389 HOH HOH . 
G 6 HOH B 13 413 371 HOH HOH . 
G 6 HOH B 14 414 364 HOH HOH . 
G 6 HOH B 15 415 378 HOH HOH . 
G 6 HOH B 16 416 293 HOH HOH . 
G 6 HOH B 17 417 342 HOH HOH . 
G 6 HOH B 18 418 350 HOH HOH . 
G 6 HOH B 19 419 365 HOH HOH . 
G 6 HOH B 20 420 337 HOH HOH . 
G 6 HOH B 21 421 305 HOH HOH . 
G 6 HOH B 22 422 386 HOH HOH . 
G 6 HOH B 23 423 381 HOH HOH . 
G 6 HOH B 24 424 345 HOH HOH . 
G 6 HOH B 25 425 315 HOH HOH . 
G 6 HOH B 26 426 304 HOH HOH . 
G 6 HOH B 27 427 324 HOH HOH . 
G 6 HOH B 28 428 332 HOH HOH . 
G 6 HOH B 29 429 352 HOH HOH . 
G 6 HOH B 30 430 346 HOH HOH . 
G 6 HOH B 31 431 379 HOH HOH . 
G 6 HOH B 32 432 310 HOH HOH . 
G 6 HOH B 33 433 320 HOH HOH . 
G 6 HOH B 34 434 387 HOH HOH . 
G 6 HOH B 35 435 351 HOH HOH . 
G 6 HOH B 36 436 383 HOH HOH . 
G 6 HOH B 37 437 362 HOH HOH . 
G 6 HOH B 38 438 307 HOH HOH . 
G 6 HOH B 39 439 394 HOH HOH . 
G 6 HOH B 40 440 377 HOH HOH . 
G 6 HOH B 41 441 312 HOH HOH . 
G 6 HOH B 42 442 334 HOH HOH . 
G 6 HOH B 43 443 348 HOH HOH . 
G 6 HOH B 44 444 372 HOH HOH . 
G 6 HOH B 45 445 297 HOH HOH . 
G 6 HOH B 46 446 294 HOH HOH . 
G 6 HOH B 47 447 392 HOH HOH . 
G 6 HOH B 48 448 326 HOH HOH . 
G 6 HOH B 49 449 370 HOH HOH . 
G 6 HOH B 50 450 382 HOH HOH . 
G 6 HOH B 51 451 375 HOH HOH . 
G 6 HOH B 52 452 390 HOH HOH . 
G 6 HOH B 53 453 323 HOH HOH . 
G 6 HOH B 54 454 319 HOH HOH . 
G 6 HOH B 55 455 290 HOH HOH . 
G 6 HOH B 56 456 291 HOH HOH . 
G 6 HOH B 57 457 299 HOH HOH . 
G 6 HOH B 58 458 330 HOH HOH . 
G 6 HOH B 59 459 1003 HOH HOH . 
G 6 HOH B 60 460 359 HOH HOH . 
G 6 HOH B 61 461 325 HOH HOH . 
G 6 HOH B 62 462 374 HOH HOH . 
G 6 HOH B 63 463 353 HOH HOH . 
G 6 HOH B 64 464 316 HOH HOH . 
G 6 HOH B 65 465 289 HOH HOH . 
G 6 HOH B 66 466 317 HOH HOH . 
G 6 HOH B 67 467 309 HOH HOH . 
G 6 HOH B 68 468 318 HOH HOH . 
G 6 HOH B 69 469 340 HOH HOH . 
G 6 HOH B 70 470 349 HOH HOH . 
G 6 HOH B 71 471 288 HOH HOH . 
G 6 HOH B 72 472 369 HOH HOH . 
G 6 HOH B 73 473 328 HOH HOH . 
G 6 HOH B 74 474 360 HOH HOH . 
G 6 HOH B 75 475 354 HOH HOH . 
G 6 HOH B 76 476 329 HOH HOH . 
G 6 HOH B 77 477 361 HOH HOH . 
G 6 HOH B 78 478 314 HOH HOH . 
G 6 HOH B 79 479 393 HOH HOH . 
G 6 HOH B 80 480 302 HOH HOH . 
G 6 HOH B 81 481 341 HOH HOH . 
G 6 HOH B 82 482 303 HOH HOH . 
G 6 HOH B 83 483 333 HOH HOH . 
G 6 HOH B 84 484 292 HOH HOH . 
G 6 HOH B 85 485 384 HOH HOH . 
G 6 HOH B 86 486 295 HOH HOH . 
G 6 HOH B 87 487 385 HOH HOH . 
G 6 HOH B 88 488 367 HOH HOH . 
G 6 HOH B 89 489 338 HOH HOH . 
G 6 HOH B 90 490 313 HOH HOH . 
G 6 HOH B 91 491 301 HOH HOH . 
G 6 HOH B 92 492 368 HOH HOH . 
G 6 HOH B 93 493 1034 HOH HOH . 
G 6 HOH B 94 494 357 HOH HOH . 
G 6 HOH B 95 495 363 HOH HOH . 
G 6 HOH B 96 496 311 HOH HOH . 
G 6 HOH B 97 497 355 HOH HOH . 
G 6 HOH B 98 498 321 HOH HOH . 
G 6 HOH B 99 499 339 HOH HOH . 
G 6 HOH B 100 500 358 HOH HOH . 
G 6 HOH B 101 501 356 HOH HOH . 
G 6 HOH B 102 502 322 HOH HOH . 
G 6 HOH B 103 503 1049 HOH HOH . 
G 6 HOH B 104 504 376 HOH HOH . 
G 6 HOH B 105 505 300 HOH HOH . 
G 6 HOH B 106 506 391 HOH HOH . 
G 6 HOH B 107 507 388 HOH HOH . 
G 6 HOH B 108 508 380 HOH HOH . 
G 6 HOH B 109 509 336 HOH HOH . 
G 6 HOH B 110 510 1007 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N GLY . . . C 3 -10.274 12.5 -36.987 1 18.43 ? N GLY 1001 A 1 
HETATM 2 C CA GLY . . . C 3 -9.93 11.748 -38.179 1 18.95 ? CA GLY 1001 A 1 
HETATM 3 C C GLY . . . C 3 -9.556 10.305 -37.893 1 17.92 ? C GLY 1001 A 1 
HETATM 4 O O GLY . . . C 3 -9.628 9.445 -38.773 1 15.23 ? O GLY 1001 A 1 
HETATM 5 O OXT GLY . . . C 3 -9.173 9.961 -36.772 1 19.76 ? OXT GLY 1001 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    31 
_model_server_stats.query_time_ms           279 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           5 
#