data_5VIH # _model_server_result.job_id 3eteZFW-VPRaERQwZRyJfA _model_server_result.datetime_utc '2024-11-26 19:52:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5vih # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1001}' # _entry.id 5VIH # _exptl.entry_id 5VIH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 75.067 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5VIH _cell.length_a 54.736 _cell.length_b 87.221 _cell.length_c 122.277 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5VIH _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 28 A CYS 28 1_555 A SG CYS 62 A CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 A SG CYS 44 A CYS 44 1_555 A SG CYS 63 A CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 B SG CYS 29 B CYS 32 1_555 B SG CYS 55 B CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf4 B SG CYS 36 B CYS 39 1_555 B SG CYS 56 B CYS 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf5 B SG CYS 226 B CYS 229 1_555 B SG CYS 281 B CYS 284 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? # _chem_comp.formula 'C2 H5 N O2' _chem_comp.formula_weight 75.067 _chem_comp.id GLY _chem_comp.mon_nstd_flag y _chem_comp.name GLYCINE _chem_comp.type 'peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA GLY sing 154 n n N H GLY sing 155 n n N H2 GLY sing 156 n n CA C GLY sing 157 n n CA HA2 GLY sing 158 n n CA HA3 GLY sing 159 n n C O GLY doub 160 n n C OXT GLY sing 161 n n OXT HXT GLY sing 162 n n # _atom_sites.entry_id 5VIH _atom_sites.fract_transf_matrix[1][1] 0.01827 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011465 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008178 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GLY A 1 1001 1001 GLY GLY . D 4 5DZ B 1 301 286 5DZ ST6 . E 5 PEG B 1 302 287 PEG PEG . F 6 HOH A 1 1101 1048 HOH HOH . F 6 HOH A 2 1102 1053 HOH HOH . F 6 HOH A 3 1103 1092 HOH HOH . F 6 HOH A 4 1104 1069 HOH HOH . F 6 HOH A 5 1105 1031 HOH HOH . F 6 HOH A 6 1106 1096 HOH HOH . F 6 HOH A 7 1107 1103 HOH HOH . F 6 HOH A 8 1108 1100 HOH HOH . F 6 HOH A 9 1109 1073 HOH HOH . F 6 HOH A 10 1110 1021 HOH HOH . F 6 HOH A 11 1111 1107 HOH HOH . F 6 HOH A 12 1112 1002 HOH HOH . F 6 HOH A 13 1113 1102 HOH HOH . F 6 HOH A 14 1114 1110 HOH HOH . F 6 HOH A 15 1115 1044 HOH HOH . F 6 HOH A 16 1116 1070 HOH HOH . F 6 HOH A 17 1117 1055 HOH HOH . F 6 HOH A 18 1118 1066 HOH HOH . F 6 HOH A 19 1119 1014 HOH HOH . F 6 HOH A 20 1120 1057 HOH HOH . F 6 HOH A 21 1121 1010 HOH HOH . F 6 HOH A 22 1122 1090 HOH HOH . F 6 HOH A 23 1123 1111 HOH HOH . F 6 HOH A 24 1124 1022 HOH HOH . F 6 HOH A 25 1125 1050 HOH HOH . F 6 HOH A 26 1126 1078 HOH HOH . F 6 HOH A 27 1127 1097 HOH HOH . F 6 HOH A 28 1128 1105 HOH HOH . F 6 HOH A 29 1129 1041 HOH HOH . F 6 HOH A 30 1130 1019 HOH HOH . F 6 HOH A 31 1131 1079 HOH HOH . F 6 HOH A 32 1132 1067 HOH HOH . F 6 HOH A 33 1133 1036 HOH HOH . F 6 HOH A 34 1134 1108 HOH HOH . F 6 HOH A 35 1135 1013 HOH HOH . F 6 HOH A 36 1136 1072 HOH HOH . F 6 HOH A 37 1137 1051 HOH HOH . F 6 HOH A 38 1138 1060 HOH HOH . F 6 HOH A 39 1139 1061 HOH HOH . F 6 HOH A 40 1140 1006 HOH HOH . F 6 HOH A 41 1141 1074 HOH HOH . F 6 HOH A 42 1142 1025 HOH HOH . F 6 HOH A 43 1143 1018 HOH HOH . F 6 HOH A 44 1144 1065 HOH HOH . F 6 HOH A 45 1145 1094 HOH HOH . F 6 HOH A 46 1146 1004 HOH HOH . F 6 HOH A 47 1147 1016 HOH HOH . F 6 HOH A 48 1148 1083 HOH HOH . F 6 HOH A 49 1149 1015 HOH HOH . F 6 HOH A 50 1150 1085 HOH HOH . F 6 HOH A 51 1151 1005 HOH HOH . F 6 HOH A 52 1152 1024 HOH HOH . F 6 HOH A 53 1153 1082 HOH HOH . F 6 HOH A 54 1154 1059 HOH HOH . F 6 HOH A 55 1155 1064 HOH HOH . F 6 HOH A 56 1156 1071 HOH HOH . F 6 HOH A 57 1157 1033 HOH HOH . F 6 HOH A 58 1158 1008 HOH HOH . F 6 HOH A 59 1159 1077 HOH HOH . F 6 HOH A 60 1160 1112 HOH HOH . F 6 HOH A 61 1161 1032 HOH HOH . F 6 HOH A 62 1162 1035 HOH HOH . F 6 HOH A 63 1163 1054 HOH HOH . F 6 HOH A 64 1164 1017 HOH HOH . F 6 HOH A 65 1165 1027 HOH HOH . F 6 HOH A 66 1166 1040 HOH HOH . F 6 HOH A 67 1167 1037 HOH HOH . F 6 HOH A 68 1168 1026 HOH HOH . F 6 HOH A 69 1169 1042 HOH HOH . F 6 HOH A 70 1170 1109 HOH HOH . F 6 HOH A 71 1171 1009 HOH HOH . F 6 HOH A 72 1172 1047 HOH HOH . F 6 HOH A 73 1173 1114 HOH HOH . F 6 HOH A 74 1174 1028 HOH HOH . F 6 HOH A 75 1175 1088 HOH HOH . F 6 HOH A 76 1176 1075 HOH HOH . F 6 HOH A 77 1177 1056 HOH HOH . F 6 HOH A 78 1178 1076 HOH HOH . F 6 HOH A 79 1179 1038 HOH HOH . F 6 HOH A 80 1180 1084 HOH HOH . F 6 HOH A 81 1181 1012 HOH HOH . F 6 HOH A 82 1182 1058 HOH HOH . F 6 HOH A 83 1183 1062 HOH HOH . F 6 HOH A 84 1184 1063 HOH HOH . F 6 HOH A 85 1185 1039 HOH HOH . F 6 HOH A 86 1186 1099 HOH HOH . F 6 HOH A 87 1187 1098 HOH HOH . F 6 HOH A 88 1188 1113 HOH HOH . F 6 HOH A 89 1189 1020 HOH HOH . F 6 HOH A 90 1190 1095 HOH HOH . F 6 HOH A 91 1191 1052 HOH HOH . F 6 HOH A 92 1192 1046 HOH HOH . F 6 HOH A 93 1193 296 HOH HOH . F 6 HOH A 94 1194 1093 HOH HOH . F 6 HOH A 95 1195 1089 HOH HOH . F 6 HOH A 96 1196 1106 HOH HOH . F 6 HOH A 97 1197 1068 HOH HOH . F 6 HOH A 98 1198 1081 HOH HOH . F 6 HOH A 99 1199 1043 HOH HOH . F 6 HOH A 100 1200 1086 HOH HOH . F 6 HOH A 101 1201 1091 HOH HOH . F 6 HOH A 102 1202 1011 HOH HOH . F 6 HOH A 103 1203 1023 HOH HOH . F 6 HOH A 104 1204 331 HOH HOH . F 6 HOH A 105 1205 1080 HOH HOH . F 6 HOH A 106 1206 1029 HOH HOH . F 6 HOH A 107 1207 1101 HOH HOH . F 6 HOH A 108 1208 1087 HOH HOH . F 6 HOH A 109 1209 1104 HOH HOH . F 6 HOH A 110 1210 1030 HOH HOH . F 6 HOH A 111 1211 1045 HOH HOH . G 6 HOH B 1 401 335 HOH HOH . G 6 HOH B 2 402 373 HOH HOH . G 6 HOH B 3 403 344 HOH HOH . G 6 HOH B 4 404 366 HOH HOH . G 6 HOH B 5 405 298 HOH HOH . G 6 HOH B 6 406 347 HOH HOH . G 6 HOH B 7 407 306 HOH HOH . G 6 HOH B 8 408 327 HOH HOH . G 6 HOH B 9 409 395 HOH HOH . G 6 HOH B 10 410 343 HOH HOH . G 6 HOH B 11 411 308 HOH HOH . G 6 HOH B 12 412 389 HOH HOH . G 6 HOH B 13 413 371 HOH HOH . G 6 HOH B 14 414 364 HOH HOH . G 6 HOH B 15 415 378 HOH HOH . G 6 HOH B 16 416 293 HOH HOH . G 6 HOH B 17 417 342 HOH HOH . G 6 HOH B 18 418 350 HOH HOH . G 6 HOH B 19 419 365 HOH HOH . G 6 HOH B 20 420 337 HOH HOH . G 6 HOH B 21 421 305 HOH HOH . G 6 HOH B 22 422 386 HOH HOH . G 6 HOH B 23 423 381 HOH HOH . G 6 HOH B 24 424 345 HOH HOH . G 6 HOH B 25 425 315 HOH HOH . G 6 HOH B 26 426 304 HOH HOH . G 6 HOH B 27 427 324 HOH HOH . G 6 HOH B 28 428 332 HOH HOH . G 6 HOH B 29 429 352 HOH HOH . G 6 HOH B 30 430 346 HOH HOH . G 6 HOH B 31 431 379 HOH HOH . G 6 HOH B 32 432 310 HOH HOH . G 6 HOH B 33 433 320 HOH HOH . G 6 HOH B 34 434 387 HOH HOH . G 6 HOH B 35 435 351 HOH HOH . G 6 HOH B 36 436 383 HOH HOH . G 6 HOH B 37 437 362 HOH HOH . G 6 HOH B 38 438 307 HOH HOH . G 6 HOH B 39 439 394 HOH HOH . G 6 HOH B 40 440 377 HOH HOH . G 6 HOH B 41 441 312 HOH HOH . G 6 HOH B 42 442 334 HOH HOH . G 6 HOH B 43 443 348 HOH HOH . G 6 HOH B 44 444 372 HOH HOH . G 6 HOH B 45 445 297 HOH HOH . G 6 HOH B 46 446 294 HOH HOH . G 6 HOH B 47 447 392 HOH HOH . G 6 HOH B 48 448 326 HOH HOH . G 6 HOH B 49 449 370 HOH HOH . G 6 HOH B 50 450 382 HOH HOH . G 6 HOH B 51 451 375 HOH HOH . G 6 HOH B 52 452 390 HOH HOH . G 6 HOH B 53 453 323 HOH HOH . G 6 HOH B 54 454 319 HOH HOH . G 6 HOH B 55 455 290 HOH HOH . G 6 HOH B 56 456 291 HOH HOH . G 6 HOH B 57 457 299 HOH HOH . G 6 HOH B 58 458 330 HOH HOH . G 6 HOH B 59 459 1003 HOH HOH . G 6 HOH B 60 460 359 HOH HOH . G 6 HOH B 61 461 325 HOH HOH . G 6 HOH B 62 462 374 HOH HOH . G 6 HOH B 63 463 353 HOH HOH . G 6 HOH B 64 464 316 HOH HOH . G 6 HOH B 65 465 289 HOH HOH . G 6 HOH B 66 466 317 HOH HOH . G 6 HOH B 67 467 309 HOH HOH . G 6 HOH B 68 468 318 HOH HOH . G 6 HOH B 69 469 340 HOH HOH . G 6 HOH B 70 470 349 HOH HOH . G 6 HOH B 71 471 288 HOH HOH . G 6 HOH B 72 472 369 HOH HOH . G 6 HOH B 73 473 328 HOH HOH . G 6 HOH B 74 474 360 HOH HOH . G 6 HOH B 75 475 354 HOH HOH . G 6 HOH B 76 476 329 HOH HOH . G 6 HOH B 77 477 361 HOH HOH . G 6 HOH B 78 478 314 HOH HOH . G 6 HOH B 79 479 393 HOH HOH . G 6 HOH B 80 480 302 HOH HOH . G 6 HOH B 81 481 341 HOH HOH . G 6 HOH B 82 482 303 HOH HOH . G 6 HOH B 83 483 333 HOH HOH . G 6 HOH B 84 484 292 HOH HOH . G 6 HOH B 85 485 384 HOH HOH . G 6 HOH B 86 486 295 HOH HOH . G 6 HOH B 87 487 385 HOH HOH . G 6 HOH B 88 488 367 HOH HOH . G 6 HOH B 89 489 338 HOH HOH . G 6 HOH B 90 490 313 HOH HOH . G 6 HOH B 91 491 301 HOH HOH . G 6 HOH B 92 492 368 HOH HOH . G 6 HOH B 93 493 1034 HOH HOH . G 6 HOH B 94 494 357 HOH HOH . G 6 HOH B 95 495 363 HOH HOH . G 6 HOH B 96 496 311 HOH HOH . G 6 HOH B 97 497 355 HOH HOH . G 6 HOH B 98 498 321 HOH HOH . G 6 HOH B 99 499 339 HOH HOH . G 6 HOH B 100 500 358 HOH HOH . G 6 HOH B 101 501 356 HOH HOH . G 6 HOH B 102 502 322 HOH HOH . G 6 HOH B 103 503 1049 HOH HOH . G 6 HOH B 104 504 376 HOH HOH . G 6 HOH B 105 505 300 HOH HOH . G 6 HOH B 106 506 391 HOH HOH . G 6 HOH B 107 507 388 HOH HOH . G 6 HOH B 108 508 380 HOH HOH . G 6 HOH B 109 509 336 HOH HOH . G 6 HOH B 110 510 1007 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N GLY . . . C 3 -10.274 12.5 -36.987 1 18.43 ? N GLY 1001 A 1 HETATM 2 C CA GLY . . . C 3 -9.93 11.748 -38.179 1 18.95 ? CA GLY 1001 A 1 HETATM 3 C C GLY . . . C 3 -9.556 10.305 -37.893 1 17.92 ? C GLY 1001 A 1 HETATM 4 O O GLY . . . C 3 -9.628 9.445 -38.773 1 15.23 ? O GLY 1001 A 1 HETATM 5 O OXT GLY . . . C 3 -9.173 9.961 -36.772 1 19.76 ? OXT GLY 1001 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 32 _model_server_stats.query_time_ms 340 _model_server_stats.encode_time_ms 18 _model_server_stats.element_count 5 #