data_5VJ1 # _model_server_result.job_id 1O4ajZbMzMqWB51l3TBfXg _model_server_result.datetime_utc '2024-12-26 14:13:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5vj1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":301}' # _entry.id 5VJ1 # _exptl.entry_id 5VJ1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 767.534 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COENZYME A' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.01 _cell.angle_gamma 90 _cell.entry_id 5VJ1 _cell.length_a 98.74 _cell.length_b 163.56 _cell.length_c 100.44 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5VJ1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? tetrameric 4 author_defined_assembly 1 ? tetrameric 4 author_defined_assembly 2 PISA octameric 8 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,I,J 1 1 E,F,G,H,K 2 1 A,B,E,F,I 3 1 G,H,K 3 2 C,D,J 3 3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_556 -x,y+1/2,-z+1 -1 0 0 0 1 0 0 0 -1 -7.023828 81.78 100.194109 3 'crystal symmetry operation' 2_545 -x,y-1/2,-z -1 0 0 0 1 0 0 0 -1 0 -81.78 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 J N N ? 6 K N N # _chem_comp.formula 'C21 H36 N7 O16 P3 S' _chem_comp.formula_weight 767.534 _chem_comp.id COA _chem_comp.mon_nstd_flag . _chem_comp.name 'COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A COA sing 70 n y N1A C6A COA doub 71 n y C2A N3A COA doub 72 n y C2A H2A COA sing 73 n n N3A C4A COA sing 74 n y C4A C5A COA doub 75 n y C4A N9A COA sing 76 n y C5A C6A COA sing 77 n y C5A N7A COA sing 78 n y C6A N6A COA sing 79 n n N6A H61A COA sing 80 n n N6A H62A COA sing 81 n n N7A C8A COA doub 82 n y C8A N9A COA sing 83 n y C8A H8A COA sing 84 n n N9A C1B COA sing 85 n n C1B C2B COA sing 86 n n C1B O4B COA sing 87 n n C1B H1B COA sing 88 n n C2B O2B COA sing 89 n n C2B C3B COA sing 90 n n C2B H2B COA sing 91 n n O2B HO2A COA sing 92 n n C3B O3B COA sing 93 n n C3B C4B COA sing 94 n n C3B H3B COA sing 95 n n O3B P3B COA sing 96 n n P3B O7A COA doub 97 n n P3B O8A COA sing 98 n n P3B O9A COA sing 99 n n O8A HOA8 COA sing 100 n n O9A HOA9 COA sing 101 n n C4B O4B COA sing 102 n n C4B C5B COA sing 103 n n C4B H4B COA sing 104 n n C5B O5B COA sing 105 n n C5B H51A COA sing 106 n n C5B H52A COA sing 107 n n O5B P1A COA sing 108 n n P1A O1A COA doub 109 n n P1A O2A COA sing 110 n n P1A O3A COA sing 111 n n O2A HOA2 COA sing 112 n n O3A P2A COA sing 113 n n P2A O4A COA doub 114 n n P2A O5A COA sing 115 n n P2A O6A COA sing 116 n n O5A HOA5 COA sing 117 n n O6A CCP COA sing 118 n n CBP CCP COA sing 119 n n CBP CDP COA sing 120 n n CBP CEP COA sing 121 n n CBP CAP COA sing 122 n n CCP H121 COA sing 123 n n CCP H122 COA sing 124 n n CDP H131 COA sing 125 n n CDP H132 COA sing 126 n n CDP H133 COA sing 127 n n CEP H141 COA sing 128 n n CEP H142 COA sing 129 n n CEP H143 COA sing 130 n n CAP OAP COA sing 131 n n CAP C9P COA sing 132 n n CAP H10 COA sing 133 n n OAP HO1 COA sing 134 n n C9P O9P COA doub 135 n n C9P N8P COA sing 136 n n N8P C7P COA sing 137 n n N8P HN8 COA sing 138 n n C7P C6P COA sing 139 n n C7P H71 COA sing 140 n n C7P H72 COA sing 141 n n C6P C5P COA sing 142 n n C6P H61 COA sing 143 n n C6P H62 COA sing 144 n n C5P O5P COA doub 145 n n C5P N4P COA sing 146 n n N4P C3P COA sing 147 n n N4P HN4 COA sing 148 n n C3P C2P COA sing 149 n n C3P H31 COA sing 150 n n C3P H32 COA sing 151 n n C2P S1P COA sing 152 n n C2P H21 COA sing 153 n n C2P H22 COA sing 154 n n S1P HS1 COA sing 155 n n # _atom_sites.entry_id 5VJ1 _atom_sites.fract_transf_matrix[1][1] 0.010128 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00071 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006114 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009981 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 5 CL A 1 601 1 CL CL . J 6 COA D 1 301 591 COA COA . K 6 COA L 1 301 592 COA COA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A COA . . . J 6 18.547 26.136 18.227 1 59.42 ? N1A COA 301 D 1 HETATM 2 C C2A COA . . . J 6 17.583 26.678 17.502 1 64.82 ? C2A COA 301 D 1 HETATM 3 N N3A COA . . . J 6 17.791 27.091 16.265 1 63.37 ? N3A COA 301 D 1 HETATM 4 C C4A COA . . . J 6 19.001 26.973 15.698 1 61.78 ? C4A COA 301 D 1 HETATM 5 C C5A COA . . . J 6 20.037 26.408 16.427 1 59.11 ? C5A COA 301 D 1 HETATM 6 C C6A COA . . . J 6 19.78 25.982 17.724 1 59.66 ? C6A COA 301 D 1 HETATM 7 N N6A COA . . . J 6 20.733 25.404 18.448 1 62.12 ? N6A COA 301 D 1 HETATM 8 N N7A COA . . . J 6 21.117 26.414 15.651 1 58.96 ? N7A COA 301 D 1 HETATM 9 C C8A COA . . . J 6 20.776 26.953 14.483 1 61.09 ? C8A COA 301 D 1 HETATM 10 N N9A COA . . . J 6 19.491 27.301 14.506 1 62.09 ? N9A COA 301 D 1 HETATM 11 C C1B COA . . . J 6 18.738 27.949 13.407 1 64.23 ? C1B COA 301 D 1 HETATM 12 C C2B COA . . . J 6 18.83 29.474 13.454 1 67.53 ? C2B COA 301 D 1 HETATM 13 O O2B COA . . . J 6 17.914 29.989 14.425 1 71.55 ? O2B COA 301 D 1 HETATM 14 C C3B COA . . . J 6 18.386 29.848 12.041 1 72.13 ? C3B COA 301 D 1 HETATM 15 O O3B COA . . . J 6 16.973 30.073 12.052 1 79.71 ? O3B COA 301 D 1 HETATM 16 P P3B COA . . . J 6 16.164 30.394 10.696 1 82.11 ? P3B COA 301 D 1 HETATM 17 O O7A COA . . . J 6 16.762 31.518 9.94 1 75.92 ? O7A COA 301 D 1 HETATM 18 O O8A COA . . . J 6 14.656 30.697 11.174 1 77.14 ? O8A COA 301 D 1 HETATM 19 O O9A COA . . . J 6 16.107 29.029 9.844 1 78.68 ? O9A COA 301 D 1 HETATM 20 C C4B COA . . . J 6 18.723 28.605 11.212 1 68.96 ? C4B COA 301 D 1 HETATM 21 O O4B COA . . . J 6 19.289 27.641 12.117 1 62.43 ? O4B COA 301 D 1 HETATM 22 C C5B COA . . . J 6 19.711 28.959 10.097 1 75.65 ? C5B COA 301 D 1 HETATM 23 O O5B COA . . . J 6 21.041 29.141 10.593 1 81.12 ? O5B COA 301 D 1 HETATM 24 P P1A COA . . . J 6 22.071 30.128 9.842 1 81.54 ? P1A COA 301 D 1 HETATM 25 O O1A COA . . . J 6 22.791 30.911 10.872 1 79.35 ? O1A COA 301 D 1 HETATM 26 O O2A COA . . . J 6 21.296 30.854 8.81 1 79.66 ? O2A COA 301 D 1 HETATM 27 O O3A COA . . . J 6 23.1 29.13 9.104 1 77.96 ? O3A COA 301 D 1 HETATM 28 P P2A COA . . . J 6 24.686 29.201 9.381 1 77.99 ? P2A COA 301 D 1 HETATM 29 O O4A COA . . . J 6 25.138 30.609 9.3 1 76.29 ? O4A COA 301 D 1 HETATM 30 O O5A COA . . . J 6 25.342 28.213 8.496 1 72.03 ? O5A COA 301 D 1 HETATM 31 O O6A COA . . . J 6 24.789 28.709 10.913 1 80.51 ? O6A COA 301 D 1 HETATM 32 C CBP COA . . . J 6 25.17 27.1 12.714 1 69.61 ? CBP COA 301 D 1 HETATM 33 C CCP COA . . . J 6 24.791 27.317 11.247 1 70.5 ? CCP COA 301 D 1 HETATM 34 C CDP COA . . . J 6 24.538 25.796 13.206 1 70.92 ? CDP COA 301 D 1 HETATM 35 C CEP COA . . . J 6 26.693 27.008 12.835 1 59.93 ? CEP COA 301 D 1 HETATM 36 C CAP COA . . . J 6 24.654 28.271 13.555 1 68.14 ? CAP COA 301 D 1 HETATM 37 O OAP COA . . . J 6 23.224 28.279 13.539 1 67.22 ? OAP COA 301 D 1 HETATM 38 C C9P COA . . . J 6 25.148 28.184 15.002 1 62.66 ? C9P COA 301 D 1 HETATM 39 O O9P COA . . . J 6 26.081 28.889 15.385 1 64.81 ? O9P COA 301 D 1 HETATM 40 N N8P COA . . . J 6 24.49 27.336 15.788 1 53.49 ? N8P COA 301 D 1 HETATM 41 C C7P COA . . . J 6 24.785 27.214 17.224 1 55.4 ? C7P COA 301 D 1 HETATM 42 C C6P COA . . . J 6 25.092 25.759 17.584 1 55.38 ? C6P COA 301 D 1 HETATM 43 C C5P COA . . . J 6 25.557 25.624 19.036 1 54.54 ? C5P COA 301 D 1 HETATM 44 O O5P COA . . . J 6 26.553 26.226 19.436 1 57.13 ? O5P COA 301 D 1 HETATM 45 N N4P COA . . . J 6 24.814 24.829 19.801 1 54.37 ? N4P COA 301 D 1 HETATM 46 C C3P COA . . . J 6 24.674 25.044 21.25 1 56.32 ? C3P COA 301 D 1 HETATM 47 C C2P COA . . . J 6 23.584 24.137 21.825 1 55.21 ? C2P COA 301 D 1 HETATM 48 S S1P COA . . . J 6 24.217 22.551 22.486 1 64.26 ? S1P COA 301 D 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 26 _model_server_stats.element_count 48 #