data_5VJ1 # _model_server_result.job_id n69ejbPCvZZqj2gdHFJg7Q _model_server_result.datetime_utc '2024-12-26 14:09:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5vj1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":301}' # _entry.id 5VJ1 # _exptl.entry_id 5VJ1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 767.534 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COENZYME A' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.01 _cell.angle_gamma 90 _cell.entry_id 5VJ1 _cell.length_a 98.74 _cell.length_b 163.56 _cell.length_c 100.44 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5VJ1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? tetrameric 4 author_defined_assembly 1 ? tetrameric 4 author_defined_assembly 2 PISA octameric 8 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,I,J 1 1 E,F,G,H,K 2 1 A,B,E,F,I 3 1 G,H,K 3 2 C,D,J 3 3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_556 -x,y+1/2,-z+1 -1 0 0 0 1 0 0 0 -1 -7.023828 81.78 100.194109 3 'crystal symmetry operation' 2_545 -x,y-1/2,-z -1 0 0 0 1 0 0 0 -1 0 -81.78 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 J N N ? 6 K N N # _chem_comp.formula 'C21 H36 N7 O16 P3 S' _chem_comp.formula_weight 767.534 _chem_comp.id COA _chem_comp.mon_nstd_flag . _chem_comp.name 'COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A COA sing 70 n y N1A C6A COA doub 71 n y C2A N3A COA doub 72 n y C2A H2A COA sing 73 n n N3A C4A COA sing 74 n y C4A C5A COA doub 75 n y C4A N9A COA sing 76 n y C5A C6A COA sing 77 n y C5A N7A COA sing 78 n y C6A N6A COA sing 79 n n N6A H61A COA sing 80 n n N6A H62A COA sing 81 n n N7A C8A COA doub 82 n y C8A N9A COA sing 83 n y C8A H8A COA sing 84 n n N9A C1B COA sing 85 n n C1B C2B COA sing 86 n n C1B O4B COA sing 87 n n C1B H1B COA sing 88 n n C2B O2B COA sing 89 n n C2B C3B COA sing 90 n n C2B H2B COA sing 91 n n O2B HO2A COA sing 92 n n C3B O3B COA sing 93 n n C3B C4B COA sing 94 n n C3B H3B COA sing 95 n n O3B P3B COA sing 96 n n P3B O7A COA doub 97 n n P3B O8A COA sing 98 n n P3B O9A COA sing 99 n n O8A HOA8 COA sing 100 n n O9A HOA9 COA sing 101 n n C4B O4B COA sing 102 n n C4B C5B COA sing 103 n n C4B H4B COA sing 104 n n C5B O5B COA sing 105 n n C5B H51A COA sing 106 n n C5B H52A COA sing 107 n n O5B P1A COA sing 108 n n P1A O1A COA doub 109 n n P1A O2A COA sing 110 n n P1A O3A COA sing 111 n n O2A HOA2 COA sing 112 n n O3A P2A COA sing 113 n n P2A O4A COA doub 114 n n P2A O5A COA sing 115 n n P2A O6A COA sing 116 n n O5A HOA5 COA sing 117 n n O6A CCP COA sing 118 n n CBP CCP COA sing 119 n n CBP CDP COA sing 120 n n CBP CEP COA sing 121 n n CBP CAP COA sing 122 n n CCP H121 COA sing 123 n n CCP H122 COA sing 124 n n CDP H131 COA sing 125 n n CDP H132 COA sing 126 n n CDP H133 COA sing 127 n n CEP H141 COA sing 128 n n CEP H142 COA sing 129 n n CEP H143 COA sing 130 n n CAP OAP COA sing 131 n n CAP C9P COA sing 132 n n CAP H10 COA sing 133 n n OAP HO1 COA sing 134 n n C9P O9P COA doub 135 n n C9P N8P COA sing 136 n n N8P C7P COA sing 137 n n N8P HN8 COA sing 138 n n C7P C6P COA sing 139 n n C7P H71 COA sing 140 n n C7P H72 COA sing 141 n n C6P C5P COA sing 142 n n C6P H61 COA sing 143 n n C6P H62 COA sing 144 n n C5P O5P COA doub 145 n n C5P N4P COA sing 146 n n N4P C3P COA sing 147 n n N4P HN4 COA sing 148 n n C3P C2P COA sing 149 n n C3P H31 COA sing 150 n n C3P H32 COA sing 151 n n C2P S1P COA sing 152 n n C2P H21 COA sing 153 n n C2P H22 COA sing 154 n n S1P HS1 COA sing 155 n n # _atom_sites.entry_id 5VJ1 _atom_sites.fract_transf_matrix[1][1] 0.010128 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00071 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006114 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009981 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 5 CL A 1 601 1 CL CL . J 6 COA D 1 301 591 COA COA . K 6 COA L 1 301 592 COA COA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A COA . . . K 6 17.307 -74.039 34.575 1 58.06 ? N1A COA 301 L 1 HETATM 2 C C2A COA . . . K 6 16.252 -74.587 35.151 1 63.95 ? C2A COA 301 L 1 HETATM 3 N N3A COA . . . K 6 16.294 -75.042 36.391 1 64.68 ? N3A COA 301 L 1 HETATM 4 C C4A COA . . . K 6 17.423 -74.961 37.11 1 61.82 ? C4A COA 301 L 1 HETATM 5 C C5A COA . . . K 6 18.551 -74.389 36.54 1 59.8 ? C5A COA 301 L 1 HETATM 6 C C6A COA . . . K 6 18.468 -73.919 35.236 1 59.38 ? C6A COA 301 L 1 HETATM 7 N N6A COA . . . K 6 19.512 -73.328 34.664 1 59.78 ? N6A COA 301 L 1 HETATM 8 N N7A COA . . . K 6 19.522 -74.433 37.446 1 58.13 ? N7A COA 301 L 1 HETATM 9 C C8A COA . . . K 6 19.028 -75.006 38.542 1 62.31 ? C8A COA 301 L 1 HETATM 10 N N9A COA . . . K 6 17.753 -75.332 38.344 1 63.99 ? N9A COA 301 L 1 HETATM 11 C C1B COA . . . K 6 16.854 -75.966 39.334 1 69.77 ? C1B COA 301 L 1 HETATM 12 C C2B COA . . . K 6 16.986 -77.489 39.354 1 71.96 ? C2B COA 301 L 1 HETATM 13 O O2B COA . . . K 6 16.147 -78.06 38.346 1 77.62 ? O2B COA 301 L 1 HETATM 14 C C3B COA . . . K 6 16.452 -77.84 40.743 1 74.64 ? C3B COA 301 L 1 HETATM 15 O O3B COA . . . K 6 15.074 -78.204 40.611 1 81.44 ? O3B COA 301 L 1 HETATM 16 P P3B COA . . . K 6 14.163 -78.609 41.877 1 84.71 ? P3B COA 301 L 1 HETATM 17 O O7A COA . . . K 6 14.55 -79.916 42.455 1 80.98 ? O7A COA 301 L 1 HETATM 18 O O8A COA . . . K 6 12.65 -78.604 41.325 1 82.12 ? O8A COA 301 L 1 HETATM 19 O O9A COA . . . K 6 14.244 -77.41 42.948 1 83.86 ? O9A COA 301 L 1 HETATM 20 C C4B COA . . . K 6 16.6 -76.538 41.536 1 74.98 ? C4B COA 301 L 1 HETATM 21 O O4B COA . . . K 6 17.237 -75.588 40.665 1 70.22 ? O4B COA 301 L 1 HETATM 22 C C5B COA . . . K 6 17.445 -76.753 42.796 1 80.08 ? C5B COA 301 L 1 HETATM 23 O O5B COA . . . K 6 18.838 -76.895 42.5 1 79.11 ? O5B COA 301 L 1 HETATM 24 P P1A COA . . . K 6 19.737 -77.982 43.282 1 77.72 ? P1A COA 301 L 1 HETATM 25 O O1A COA . . . K 6 20.616 -78.654 42.299 1 73.98 ? O1A COA 301 L 1 HETATM 26 O O2A COA . . . K 6 18.82 -78.81 44.099 1 62.63 ? O2A COA 301 L 1 HETATM 27 O O3A COA . . . K 6 20.631 -77.077 44.271 1 78.3 ? O3A COA 301 L 1 HETATM 28 P P2A COA . . . K 6 22.241 -77.105 44.213 1 80.49 ? P2A COA 301 L 1 HETATM 29 O O4A COA . . . K 6 22.724 -78.483 44.454 1 75.69 ? O4A COA 301 L 1 HETATM 30 O O5A COA . . . K 6 22.718 -76.028 45.111 1 81.4 ? O5A COA 301 L 1 HETATM 31 O O6A COA . . . K 6 22.547 -76.694 42.686 1 75.67 ? O6A COA 301 L 1 HETATM 32 C CBP COA . . . K 6 23.143 -75.126 40.929 1 63.75 ? CBP COA 301 L 1 HETATM 33 C CCP COA . . . K 6 22.473 -75.322 42.29 1 64.39 ? CCP COA 301 L 1 HETATM 34 C CDP COA . . . K 6 22.77 -73.749 40.375 1 65.7 ? CDP COA 301 L 1 HETATM 35 C CEP COA . . . K 6 24.66 -75.221 41.104 1 61.6 ? CEP COA 301 L 1 HETATM 36 C CAP COA . . . K 6 22.662 -76.219 39.971 1 62.4 ? CAP COA 301 L 1 HETATM 37 O OAP COA . . . K 6 21.266 -76.047 39.715 1 60.98 ? OAP COA 301 L 1 HETATM 38 C C9P COA . . . K 6 23.429 -76.149 38.648 1 57.3 ? C9P COA 301 L 1 HETATM 39 O O9P COA . . . K 6 24.482 -76.768 38.5 1 65.2 ? O9P COA 301 L 1 HETATM 40 N N8P COA . . . K 6 22.875 -75.393 37.705 1 48.32 ? N8P COA 301 L 1 HETATM 41 C C7P COA . . . K 6 23.51 -75.214 36.391 1 48.36 ? C7P COA 301 L 1 HETATM 42 C C6P COA . . . K 6 23.888 -73.747 36.177 1 48.24 ? C6P COA 301 L 1 HETATM 43 C C5P COA . . . K 6 24.508 -73.537 34.794 1 50.9 ? C5P COA 301 L 1 HETATM 44 O O5P COA . . . K 6 25.607 -74.019 34.524 1 46.9 ? O5P COA 301 L 1 HETATM 45 N N4P COA . . . K 6 23.777 -72.821 33.944 1 56.14 ? N4P COA 301 L 1 HETATM 46 C C3P COA . . . K 6 24.085 -72.751 32.506 1 60.59 ? C3P COA 301 L 1 HETATM 47 C C2P COA . . . K 6 23.068 -71.869 31.776 1 59.87 ? C2P COA 301 L 1 HETATM 48 S S1P COA . . . K 6 23.731 -70.238 31.272 1 65.88 ? S1P COA 301 L 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 65 _model_server_stats.query_time_ms 362 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 48 #