data_5VJ3 # _model_server_result.job_id XeVv31SQZhsjE5I4ev3OXA _model_server_result.datetime_utc '2024-10-19 21:44:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5vj3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1101}' # _entry.id 5VJ3 # _exptl.entry_id 5VJ3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 443.443 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-methyl-N-({1-[4-(trifluoromethyl)pyrimidin-2-yl]piperidin-4-yl}carbamoyl)benzene-1-sulfonamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5VJ3 _cell.length_a 48.925 _cell.length_b 48.925 _cell.length_c 103.012 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5VJ3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C MG MG . A MG 1102 1_555 D O HOH . A HOH 1207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? metalc ? metalc2 C MG MG . A MG 1102 1_555 D O HOH . A HOH 1207 7_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? metalc ? metalc3 C MG MG . A MG 1102 1_555 D O HOH . A HOH 1209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc4 C MG MG . A MG 1102 1_555 D O HOH . A HOH 1209 7_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? metalc ? metalc5 C MG MG . A MG 1102 1_555 D O HOH . A HOH 1212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? metalc ? metalc6 C MG MG . A MG 1102 1_555 D O HOH . A HOH 1212 7_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc7 C MG MG . A MG 1102 1_555 D O HOH . A HOH 1224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? metalc ? metalc8 C MG MG . A MG 1102 1_555 D O HOH . A HOH 1224 7_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? metalc ? metalc9 C MG MG . A MG 1102 1_555 D O HOH . A HOH 1227 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? metalc ? metalc10 C MG MG . A MG 1102 1_555 D O HOH . A HOH 1227 7_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc11 C MG MG . A MG 1102 1_555 D O HOH . A HOH 1233 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc12 C MG MG . A MG 1102 1_555 D O HOH . A HOH 1233 7_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? # _chem_comp.formula 'C18 H20 F3 N5 O3 S' _chem_comp.formula_weight 443.443 _chem_comp.id HV9 _chem_comp.mon_nstd_flag . _chem_comp.name 4-methyl-N-({1-[4-(trifluoromethyl)pyrimidin-2-yl]piperidin-4-yl}carbamoyl)benzene-1-sulfonamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F19 C18 HV9 sing 152 n n F20 C18 HV9 sing 153 n n F21 C18 HV9 sing 154 n n C18 C17 HV9 sing 155 n n C22 C17 HV9 doub 156 n y C22 C23 HV9 sing 157 n y C17 N16 HV9 sing 158 n y N16 C15 HV9 doub 159 n y C23 N24 HV9 doub 160 n y C15 N24 HV9 sing 161 n y C15 N14 HV9 sing 162 n n C25 N14 HV9 sing 163 n n C25 C26 HV9 sing 164 n n N14 C13 HV9 sing 165 n n C26 C11 HV9 sing 166 n n C13 C12 HV9 sing 167 n n C11 C12 HV9 sing 168 n n C11 N10 HV9 sing 169 n n N10 C09 HV9 sing 170 n n C09 O27 HV9 doub 171 n n C09 N08 HV9 sing 172 n n N08 S06 HV9 sing 173 n n O07 S06 HV9 doub 174 n n S06 O28 HV9 doub 175 n n S06 C05 HV9 sing 176 n n C05 C29 HV9 doub 177 n y C05 C04 HV9 sing 178 n y C29 C30 HV9 sing 179 n y C04 C03 HV9 doub 180 n y C30 C02 HV9 doub 181 n y C03 C02 HV9 sing 182 n y C02 C01 HV9 sing 183 n n C01 H1 HV9 sing 184 n n C01 H2 HV9 sing 185 n n C01 H3 HV9 sing 186 n n C03 H4 HV9 sing 187 n n C04 H5 HV9 sing 188 n n N08 H6 HV9 sing 189 n n N10 H7 HV9 sing 190 n n C11 H8 HV9 sing 191 n n C12 H9 HV9 sing 192 n n C12 H10 HV9 sing 193 n n C13 H11 HV9 sing 194 n n C13 H12 HV9 sing 195 n n C22 H13 HV9 sing 196 n n C23 H14 HV9 sing 197 n n C25 H15 HV9 sing 198 n n C25 H16 HV9 sing 199 n n C26 H17 HV9 sing 200 n n C26 H18 HV9 sing 201 n n C29 H19 HV9 sing 202 n n C30 H20 HV9 sing 203 n n # _atom_sites.entry_id 5VJ3 _atom_sites.fract_transf_matrix[1][1] 0.020439 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020439 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009708 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HV9 A 1 1101 1 HV9 HV9 . C 3 MG A 1 1102 1 MG MG . D 4 HOH A 1 1201 32 HOH HOH . D 4 HOH A 2 1202 4 HOH HOH . D 4 HOH A 3 1203 29 HOH HOH . D 4 HOH A 4 1204 10 HOH HOH . D 4 HOH A 5 1205 1 HOH HOH . D 4 HOH A 6 1206 27 HOH HOH . D 4 HOH A 7 1207 16 HOH HOH . D 4 HOH A 8 1208 5 HOH HOH . D 4 HOH A 9 1209 33 HOH HOH . D 4 HOH A 10 1210 19 HOH HOH . D 4 HOH A 11 1211 20 HOH HOH . D 4 HOH A 12 1212 8 HOH HOH . D 4 HOH A 13 1213 13 HOH HOH . D 4 HOH A 14 1214 21 HOH HOH . D 4 HOH A 15 1215 9 HOH HOH . D 4 HOH A 16 1216 31 HOH HOH . D 4 HOH A 17 1217 17 HOH HOH . D 4 HOH A 18 1218 23 HOH HOH . D 4 HOH A 19 1219 24 HOH HOH . D 4 HOH A 20 1220 18 HOH HOH . D 4 HOH A 21 1221 6 HOH HOH . D 4 HOH A 22 1222 12 HOH HOH . D 4 HOH A 23 1223 11 HOH HOH . D 4 HOH A 24 1224 34 HOH HOH . D 4 HOH A 25 1225 15 HOH HOH . D 4 HOH A 26 1226 3 HOH HOH . D 4 HOH A 27 1227 36 HOH HOH . D 4 HOH A 28 1228 30 HOH HOH . D 4 HOH A 29 1229 14 HOH HOH . D 4 HOH A 30 1230 2 HOH HOH . D 4 HOH A 31 1231 25 HOH HOH . D 4 HOH A 32 1232 7 HOH HOH . D 4 HOH A 33 1233 35 HOH HOH . D 4 HOH A 34 1234 28 HOH HOH . D 4 HOH A 35 1235 26 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 HV9 . . . B 2 9.965 10.584 6.601 0.8 70.25 ? C01 HV9 1101 A 1 HETATM 2 C C02 HV9 . . . B 2 9.313 11.228 5.46 0.8 69.43 ? C02 HV9 1101 A 1 HETATM 3 C C03 HV9 . . . B 2 9.167 12.598 5.405 0.8 64.39 ? C03 HV9 1101 A 1 HETATM 4 C C04 HV9 . . . B 2 8.563 13.216 4.313 0.8 64.23 ? C04 HV9 1101 A 1 HETATM 5 C C05 HV9 . . . B 2 8.055 12.511 3.214 0.8 62.69 ? C05 HV9 1101 A 1 HETATM 6 S S06 HV9 . . . B 2 7.332 13.21 1.859 0.8 68.34 ? S06 HV9 1101 A 1 HETATM 7 O O07 HV9 . . . B 2 5.976 12.801 1.849 0.8 84.96 ? O07 HV9 1101 A 1 HETATM 8 N N08 HV9 . . . B 2 8.06 12.489 0.518 0.8 60.32 ? N08 HV9 1101 A 1 HETATM 9 C C09 HV9 . . . B 2 9.099 12.957 -0.105 0.8 58.02 ? C09 HV9 1101 A 1 HETATM 10 N N10 HV9 . . . B 2 9.704 12.401 -1.086 0.8 57.38 ? N10 HV9 1101 A 1 HETATM 11 C C11 HV9 . . . B 2 10.76 12.981 -1.765 0.8 61.34 ? C11 HV9 1101 A 1 HETATM 12 C C12 HV9 . . . B 2 12.019 12.11 -1.688 0.8 65.42 ? C12 HV9 1101 A 1 HETATM 13 C C13 HV9 . . . B 2 12.989 12.363 -2.731 0.8 68.32 ? C13 HV9 1101 A 1 HETATM 14 N N14 HV9 . . . B 2 12.338 12.214 -4.084 0.8 71.43 ? N14 HV9 1101 A 1 HETATM 15 C C15 HV9 . . . B 2 13.214 12.146 -5.209 0.8 62.08 ? C15 HV9 1101 A 1 HETATM 16 N N16 HV9 . . . B 2 12.672 12.578 -6.384 0.8 61.98 ? N16 HV9 1101 A 1 HETATM 17 C C17 HV9 . . . B 2 13.434 12.585 -7.464 0.8 51.96 ? C17 HV9 1101 A 1 HETATM 18 C C18 HV9 . . . B 2 12.774 13.031 -8.706 0.8 53.72 ? C18 HV9 1101 A 1 HETATM 19 F F19 HV9 . . . B 2 13.492 12.751 -9.873 0.8 55.78 ? F19 HV9 1101 A 1 HETATM 20 F F20 HV9 . . . B 2 11.62 12.335 -8.891 0.8 56.95 ? F20 HV9 1101 A 1 HETATM 21 F F21 HV9 . . . B 2 12.354 14.402 -8.753 0.8 38.69 ? F21 HV9 1101 A 1 HETATM 22 C C22 HV9 . . . B 2 14.759 12.185 -7.487 0.8 54.88 ? C22 HV9 1101 A 1 HETATM 23 C C23 HV9 . . . B 2 15.258 11.762 -6.262 0.8 59.03 ? C23 HV9 1101 A 1 HETATM 24 N N24 HV9 . . . B 2 14.507 11.726 -5.128 0.8 55.67 ? N24 HV9 1101 A 1 HETATM 25 C C25 HV9 . . . B 2 11.318 13.363 -4.201 0.8 71.15 ? C25 HV9 1101 A 1 HETATM 26 C C26 HV9 . . . B 2 10.239 13.143 -3.24 0.8 63.74 ? C26 HV9 1101 A 1 HETATM 27 O O27 HV9 . . . B 2 9.516 14.028 0.316 0.8 69.77 ? O27 HV9 1101 A 1 HETATM 28 O O28 HV9 . . . B 2 7.565 14.598 1.917 0.8 54.62 ? O28 HV9 1101 A 1 HETATM 29 C C29 HV9 . . . B 2 8.214 11.12 3.288 0.8 61.85 ? C29 HV9 1101 A 1 HETATM 30 C C30 HV9 . . . B 2 8.821 10.482 4.356 0.8 67.09 ? C30 HV9 1101 A 1 # _model_server_stats.io_time_ms 138 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 30 #