data_5VJ3 # _model_server_result.job_id NXfw7ImbqERjDahPCNIDTw _model_server_result.datetime_utc '2024-10-19 21:48:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5vj3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1102}' # _entry.id 5VJ3 # _exptl.entry_id 5VJ3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5VJ3 _cell.length_a 48.925 _cell.length_b 48.925 _cell.length_c 103.012 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5VJ3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C MG MG . A MG 1102 1_555 D O HOH . A HOH 1207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? metalc ? metalc2 C MG MG . A MG 1102 1_555 D O HOH . A HOH 1207 7_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? metalc ? metalc3 C MG MG . A MG 1102 1_555 D O HOH . A HOH 1209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc4 C MG MG . A MG 1102 1_555 D O HOH . A HOH 1209 7_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? metalc ? metalc5 C MG MG . A MG 1102 1_555 D O HOH . A HOH 1212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? metalc ? metalc6 C MG MG . A MG 1102 1_555 D O HOH . A HOH 1212 7_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc7 C MG MG . A MG 1102 1_555 D O HOH . A HOH 1224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? metalc ? metalc8 C MG MG . A MG 1102 1_555 D O HOH . A HOH 1224 7_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? metalc ? metalc9 C MG MG . A MG 1102 1_555 D O HOH . A HOH 1227 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? metalc ? metalc10 C MG MG . A MG 1102 1_555 D O HOH . A HOH 1227 7_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc11 C MG MG . A MG 1102 1_555 D O HOH . A HOH 1233 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc12 C MG MG . A MG 1102 1_555 D O HOH . A HOH 1233 7_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5VJ3 _atom_sites.fract_transf_matrix[1][1] 0.020439 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020439 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009708 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HV9 A 1 1101 1 HV9 HV9 . C 3 MG A 1 1102 1 MG MG . D 4 HOH A 1 1201 32 HOH HOH . D 4 HOH A 2 1202 4 HOH HOH . D 4 HOH A 3 1203 29 HOH HOH . D 4 HOH A 4 1204 10 HOH HOH . D 4 HOH A 5 1205 1 HOH HOH . D 4 HOH A 6 1206 27 HOH HOH . D 4 HOH A 7 1207 16 HOH HOH . D 4 HOH A 8 1208 5 HOH HOH . D 4 HOH A 9 1209 33 HOH HOH . D 4 HOH A 10 1210 19 HOH HOH . D 4 HOH A 11 1211 20 HOH HOH . D 4 HOH A 12 1212 8 HOH HOH . D 4 HOH A 13 1213 13 HOH HOH . D 4 HOH A 14 1214 21 HOH HOH . D 4 HOH A 15 1215 9 HOH HOH . D 4 HOH A 16 1216 31 HOH HOH . D 4 HOH A 17 1217 17 HOH HOH . D 4 HOH A 18 1218 23 HOH HOH . D 4 HOH A 19 1219 24 HOH HOH . D 4 HOH A 20 1220 18 HOH HOH . D 4 HOH A 21 1221 6 HOH HOH . D 4 HOH A 22 1222 12 HOH HOH . D 4 HOH A 23 1223 11 HOH HOH . D 4 HOH A 24 1224 34 HOH HOH . D 4 HOH A 25 1225 15 HOH HOH . D 4 HOH A 26 1226 3 HOH HOH . D 4 HOH A 27 1227 36 HOH HOH . D 4 HOH A 28 1228 30 HOH HOH . D 4 HOH A 29 1229 14 HOH HOH . D 4 HOH A 30 1230 2 HOH HOH . D 4 HOH A 31 1231 25 HOH HOH . D 4 HOH A 32 1232 7 HOH HOH . D 4 HOH A 33 1233 35 HOH HOH . D 4 HOH A 34 1234 28 HOH HOH . D 4 HOH A 35 1235 26 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 7.884 _atom_site.Cartn_y 7.967 _atom_site.Cartn_z 0.074 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 46.81 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 1102 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 16 _model_server_stats.element_count 1 #