data_5VJ4 # _model_server_result.job_id 6iqKnl7y3x4-uBNiyd3JbA _model_server_result.datetime_utc '2024-10-19 04:47:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5vj4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":505}' # _entry.id 5VJ4 # _exptl.entry_id 5VJ4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 13 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5VJ4 _cell.length_a 102.055 _cell.length_b 102.055 _cell.length_c 183.211 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5VJ4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ASN 184 A ASN 254 1_555 A N MSE 185 A MSE 255 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C MSE 185 A MSE 255 1_555 A N CYS 186 A CYS 256 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 A C VAL 233 A VAL 303 1_555 A N MSE 234 A MSE 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale4 A C MSE 234 A MSE 304 1_555 A N ASP 235 A ASP 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale5 A C ARG 280 A ARG 350 1_555 A N MSE 281 A MSE 351 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale6 A C MSE 281 A MSE 351 1_555 A N ILE 282 A ILE 352 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale7 A C ILE 341 A ILE 411 1_555 A N MSE 342 A MSE 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale8 A C MSE 342 A MSE 412 1_555 A N THR 343 A THR 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale9 B C ASN 184 B ASN 254 1_555 B N MSE 185 B MSE 255 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale10 B C MSE 185 B MSE 255 1_555 B N CYS 186 B CYS 256 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale11 B C VAL 233 B VAL 303 1_555 B N MSE 234 B MSE 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale12 B C MSE 234 B MSE 304 1_555 B N ASP 235 B ASP 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.315 ? covale ? covale13 B C ARG 280 B ARG 350 1_555 B N MSE 281 B MSE 351 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale14 B C MSE 281 B MSE 351 1_555 B N ILE 282 B ILE 352 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale15 B C ILE 341 B ILE 411 1_555 B N MSE 342 B MSE 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale16 B C MSE 342 B MSE 412 1_555 B N THR 343 B THR 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5VJ4 _atom_sites.fract_transf_matrix[1][1] 0.009799 _atom_sites.fract_transf_matrix[1][2] 0.005657 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011314 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005458 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 501 1 SO4 SO4 . D 2 SO4 A 1 502 2 SO4 SO4 . E 2 SO4 A 1 503 3 SO4 SO4 . F 2 SO4 A 1 504 4 SO4 SO4 . G 2 SO4 A 1 505 9 SO4 SO4 . H 2 SO4 A 1 506 10 SO4 SO4 . I 2 SO4 B 1 501 5 SO4 SO4 . J 2 SO4 B 1 502 6 SO4 SO4 . K 2 SO4 B 1 503 7 SO4 SO4 . L 2 SO4 B 1 504 8 SO4 SO4 . M 2 SO4 B 1 505 11 SO4 SO4 . N 2 SO4 B 1 506 12 SO4 SO4 . O 2 SO4 B 1 507 13 SO4 SO4 . P 3 HOH A 1 601 5 HOH HOH . P 3 HOH A 2 602 4 HOH HOH . P 3 HOH A 3 603 3 HOH HOH . P 3 HOH A 4 604 6 HOH HOH . Q 3 HOH B 1 601 7 HOH HOH . Q 3 HOH B 2 602 2 HOH HOH . Q 3 HOH B 3 603 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . G 2 -10.695 50.274 24.769 1 164.55 ? S SO4 505 A 1 HETATM 2 O O1 SO4 . . . G 2 -12.059 49.744 24.458 1 114.51 ? O1 SO4 505 A 1 HETATM 3 O O2 SO4 . . . G 2 -9.847 49.968 23.564 1 89.49 ? O2 SO4 505 A 1 HETATM 4 O O3 SO4 . . . G 2 -10.073 49.64 25.978 1 94.25 ? O3 SO4 505 A 1 HETATM 5 O O4 SO4 . . . G 2 -10.85 51.729 25.088 1 95.72 ? O4 SO4 505 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 5 #