data_5VJ5 # _model_server_result.job_id yemOUtSKL3k4sojpoVymYA _model_server_result.datetime_utc '2024-11-24 01:48:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5vj5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":402}' # _entry.id 5VJ5 # _exptl.entry_id 5VJ5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5VJ5 _cell.length_a 55.28 _cell.length_b 73.41 _cell.length_c 180.8 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5VJ5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 F N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 46 A CYS 46 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.483 ? metalc ? metalc2 A NE2 HIS 67 A HIS 67 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc3 A SG CYS 97 A CYS 97 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc4 A SG CYS 100 A CYS 100 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? metalc ? metalc5 A SG CYS 103 A CYS 103 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? metalc ? metalc6 A SG CYS 111 A CYS 111 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.447 ? metalc ? metalc7 A SG CYS 174 A CYS 174 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? metalc ? metalc8 C ZN ZN . A ZN 401 1_555 E N10 PHN . A PHN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? metalc ? metalc9 C ZN ZN . A ZN 401 1_555 E N1 PHN . A PHN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc10 B SG CYS 46 B CYS 46 1_555 F ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? metalc ? metalc11 B NE2 HIS 67 B HIS 67 1_555 F ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc12 B SG CYS 97 B CYS 97 1_555 G ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc13 B SG CYS 100 B CYS 100 1_555 G ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc14 B SG CYS 103 B CYS 103 1_555 G ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.957 ? metalc ? metalc15 B SG CYS 111 B CYS 111 1_555 G ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.47 ? metalc ? metalc16 B SG CYS 174 B CYS 174 1_555 F ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc17 F ZN ZN . B ZN 401 1_555 H N1 PHN . B PHN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? metalc ? metalc18 F ZN ZN . B ZN 401 1_555 H N10 PHN . B PHN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5VJ5 _atom_sites.fract_transf_matrix[1][1] 0.01809 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013622 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005531 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 401 375 ZN ZN . D 2 ZN A 1 402 376 ZN ZN . E 3 PHN A 1 403 377 PHN PHN . F 2 ZN B 1 401 375 ZN ZN . G 2 ZN B 1 402 376 ZN ZN . H 3 PHN B 1 403 377 PHN PHN . I 4 HOH A 1 501 512 HOH HOH . I 4 HOH A 2 502 434 HOH HOH . I 4 HOH A 3 503 520 HOH HOH . I 4 HOH A 4 504 479 HOH HOH . I 4 HOH A 5 505 499 HOH HOH . I 4 HOH A 6 506 474 HOH HOH . I 4 HOH A 7 507 491 HOH HOH . I 4 HOH A 8 508 413 HOH HOH . I 4 HOH A 9 509 486 HOH HOH . I 4 HOH A 10 510 504 HOH HOH . I 4 HOH A 11 511 403 HOH HOH . I 4 HOH A 12 512 454 HOH HOH . I 4 HOH A 13 513 441 HOH HOH . I 4 HOH A 14 514 446 HOH HOH . I 4 HOH A 15 515 469 HOH HOH . I 4 HOH A 16 516 513 HOH HOH . I 4 HOH A 17 517 428 HOH HOH . I 4 HOH A 18 518 410 HOH HOH . I 4 HOH A 19 519 415 HOH HOH . I 4 HOH A 20 520 452 HOH HOH . I 4 HOH A 21 521 477 HOH HOH . I 4 HOH A 22 522 453 HOH HOH . I 4 HOH A 23 523 426 HOH HOH . I 4 HOH A 24 524 455 HOH HOH . I 4 HOH A 25 525 447 HOH HOH . I 4 HOH A 26 526 442 HOH HOH . I 4 HOH A 27 527 438 HOH HOH . I 4 HOH A 28 528 429 HOH HOH . I 4 HOH A 29 529 418 HOH HOH . I 4 HOH A 30 530 417 HOH HOH . I 4 HOH A 31 531 517 HOH HOH . I 4 HOH A 32 532 507 HOH HOH . I 4 HOH A 33 533 472 HOH HOH . I 4 HOH A 34 534 476 HOH HOH . I 4 HOH A 35 535 461 HOH HOH . I 4 HOH A 36 536 462 HOH HOH . I 4 HOH A 37 537 437 HOH HOH . I 4 HOH A 38 538 522 HOH HOH . I 4 HOH A 39 539 487 HOH HOH . I 4 HOH A 40 540 401 HOH HOH . I 4 HOH A 41 541 518 HOH HOH . I 4 HOH A 42 542 501 HOH HOH . I 4 HOH A 43 543 420 HOH HOH . I 4 HOH A 44 544 405 HOH HOH . I 4 HOH A 45 545 471 HOH HOH . I 4 HOH A 46 546 439 HOH HOH . I 4 HOH A 47 547 407 HOH HOH . I 4 HOH A 48 548 483 HOH HOH . I 4 HOH A 49 549 502 HOH HOH . I 4 HOH A 50 550 485 HOH HOH . I 4 HOH A 51 551 464 HOH HOH . I 4 HOH A 52 552 515 HOH HOH . I 4 HOH A 53 553 467 HOH HOH . I 4 HOH A 54 554 465 HOH HOH . I 4 HOH A 55 555 422 HOH HOH . I 4 HOH A 56 556 488 HOH HOH . I 4 HOH A 57 557 443 HOH HOH . I 4 HOH A 58 558 458 HOH HOH . I 4 HOH A 59 559 444 HOH HOH . I 4 HOH A 60 560 450 HOH HOH . I 4 HOH A 61 561 427 HOH HOH . I 4 HOH A 62 562 402 HOH HOH . I 4 HOH A 63 563 414 HOH HOH . I 4 HOH A 64 564 492 HOH HOH . I 4 HOH A 65 565 409 HOH HOH . I 4 HOH A 66 566 408 HOH HOH . I 4 HOH A 67 567 481 HOH HOH . I 4 HOH A 68 568 435 HOH HOH . I 4 HOH A 69 569 431 HOH HOH . I 4 HOH A 70 570 493 HOH HOH . I 4 HOH A 71 571 516 HOH HOH . I 4 HOH A 72 572 404 HOH HOH . I 4 HOH A 73 573 457 HOH HOH . I 4 HOH A 74 574 423 HOH HOH . I 4 HOH A 75 575 473 HOH HOH . I 4 HOH A 76 576 408 HOH HOH . I 4 HOH A 77 577 521 HOH HOH . I 4 HOH A 78 578 448 HOH HOH . I 4 HOH A 79 579 468 HOH HOH . I 4 HOH A 80 580 460 HOH HOH . I 4 HOH A 81 581 411 HOH HOH . I 4 HOH A 82 582 467 HOH HOH . I 4 HOH A 83 583 463 HOH HOH . I 4 HOH A 84 584 425 HOH HOH . I 4 HOH A 85 585 456 HOH HOH . I 4 HOH A 86 586 519 HOH HOH . I 4 HOH A 87 587 451 HOH HOH . I 4 HOH A 88 588 424 HOH HOH . I 4 HOH A 89 589 466 HOH HOH . I 4 HOH A 90 590 436 HOH HOH . I 4 HOH A 91 591 480 HOH HOH . I 4 HOH A 92 592 419 HOH HOH . I 4 HOH A 93 593 484 HOH HOH . I 4 HOH A 94 594 491 HOH HOH . I 4 HOH A 95 595 478 HOH HOH . I 4 HOH A 96 596 494 HOH HOH . I 4 HOH A 97 597 510 HOH HOH . I 4 HOH A 98 598 449 HOH HOH . I 4 HOH A 99 599 482 HOH HOH . I 4 HOH A 100 600 496 HOH HOH . I 4 HOH A 101 601 506 HOH HOH . I 4 HOH A 102 602 489 HOH HOH . I 4 HOH A 103 603 432 HOH HOH . I 4 HOH A 104 604 475 HOH HOH . I 4 HOH A 105 605 490 HOH HOH . I 4 HOH A 106 606 505 HOH HOH . I 4 HOH A 107 607 500 HOH HOH . I 4 HOH A 108 608 509 HOH HOH . I 4 HOH A 109 609 503 HOH HOH . I 4 HOH A 110 610 514 HOH HOH . I 4 HOH A 111 611 440 HOH HOH . I 4 HOH A 112 612 470 HOH HOH . I 4 HOH A 113 613 412 HOH HOH . I 4 HOH A 114 614 494 HOH HOH . I 4 HOH A 115 615 421 HOH HOH . I 4 HOH A 116 616 430 HOH HOH . I 4 HOH A 117 617 498 HOH HOH . I 4 HOH A 118 618 428 HOH HOH . I 4 HOH A 119 619 416 HOH HOH . I 4 HOH A 120 620 462 HOH HOH . I 4 HOH A 121 621 495 HOH HOH . J 4 HOH B 1 501 475 HOH HOH . J 4 HOH B 2 502 434 HOH HOH . J 4 HOH B 3 503 495 HOH HOH . J 4 HOH B 4 504 437 HOH HOH . J 4 HOH B 5 505 486 HOH HOH . J 4 HOH B 6 506 425 HOH HOH . J 4 HOH B 7 507 413 HOH HOH . J 4 HOH B 8 508 410 HOH HOH . J 4 HOH B 9 509 477 HOH HOH . J 4 HOH B 10 510 423 HOH HOH . J 4 HOH B 11 511 474 HOH HOH . J 4 HOH B 12 512 483 HOH HOH . J 4 HOH B 13 513 481 HOH HOH . J 4 HOH B 14 514 438 HOH HOH . J 4 HOH B 15 515 446 HOH HOH . J 4 HOH B 16 516 497 HOH HOH . J 4 HOH B 17 517 455 HOH HOH . J 4 HOH B 18 518 403 HOH HOH . J 4 HOH B 19 519 429 HOH HOH . J 4 HOH B 20 520 443 HOH HOH . J 4 HOH B 21 521 469 HOH HOH . J 4 HOH B 22 522 444 HOH HOH . J 4 HOH B 23 523 507 HOH HOH . J 4 HOH B 24 524 418 HOH HOH . J 4 HOH B 25 525 441 HOH HOH . J 4 HOH B 26 526 452 HOH HOH . J 4 HOH B 27 527 406 HOH HOH . J 4 HOH B 28 528 496 HOH HOH . J 4 HOH B 29 529 442 HOH HOH . J 4 HOH B 30 530 406 HOH HOH . J 4 HOH B 31 531 508 HOH HOH . J 4 HOH B 32 532 497 HOH HOH . J 4 HOH B 33 533 433 HOH HOH . J 4 HOH B 34 534 420 HOH HOH . J 4 HOH B 35 535 476 HOH HOH . J 4 HOH B 36 536 430 HOH HOH . J 4 HOH B 37 537 487 HOH HOH . J 4 HOH B 38 538 454 HOH HOH . J 4 HOH B 39 539 447 HOH HOH . J 4 HOH B 40 540 482 HOH HOH . J 4 HOH B 41 541 464 HOH HOH . J 4 HOH B 42 542 411 HOH HOH . J 4 HOH B 43 543 489 HOH HOH . J 4 HOH B 44 544 453 HOH HOH . J 4 HOH B 45 545 503 HOH HOH . J 4 HOH B 46 546 505 HOH HOH . J 4 HOH B 47 547 417 HOH HOH . J 4 HOH B 48 548 402 HOH HOH . J 4 HOH B 49 549 511 HOH HOH . J 4 HOH B 50 550 466 HOH HOH . J 4 HOH B 51 551 463 HOH HOH . J 4 HOH B 52 552 472 HOH HOH . J 4 HOH B 53 553 409 HOH HOH . J 4 HOH B 54 554 414 HOH HOH . J 4 HOH B 55 555 445 HOH HOH . J 4 HOH B 56 556 432 HOH HOH . J 4 HOH B 57 557 436 HOH HOH . J 4 HOH B 58 558 492 HOH HOH . J 4 HOH B 59 559 422 HOH HOH . J 4 HOH B 60 560 479 HOH HOH . J 4 HOH B 61 561 431 HOH HOH . J 4 HOH B 62 562 502 HOH HOH . J 4 HOH B 63 563 473 HOH HOH . J 4 HOH B 64 564 458 HOH HOH . J 4 HOH B 65 565 499 HOH HOH . J 4 HOH B 66 566 460 HOH HOH . J 4 HOH B 67 567 424 HOH HOH . J 4 HOH B 68 568 427 HOH HOH . J 4 HOH B 69 569 451 HOH HOH . J 4 HOH B 70 570 488 HOH HOH . J 4 HOH B 71 571 484 HOH HOH . J 4 HOH B 72 572 457 HOH HOH . J 4 HOH B 73 573 407 HOH HOH . J 4 HOH B 74 574 456 HOH HOH . J 4 HOH B 75 575 404 HOH HOH . J 4 HOH B 76 576 461 HOH HOH . J 4 HOH B 77 577 490 HOH HOH . J 4 HOH B 78 578 405 HOH HOH . J 4 HOH B 79 579 439 HOH HOH . J 4 HOH B 80 580 465 HOH HOH . J 4 HOH B 81 581 435 HOH HOH . J 4 HOH B 82 582 448 HOH HOH . J 4 HOH B 83 583 480 HOH HOH . J 4 HOH B 84 584 468 HOH HOH . J 4 HOH B 85 585 501 HOH HOH . J 4 HOH B 86 586 449 HOH HOH . J 4 HOH B 87 587 426 HOH HOH . J 4 HOH B 88 588 504 HOH HOH . J 4 HOH B 89 589 401 HOH HOH . J 4 HOH B 90 590 478 HOH HOH . J 4 HOH B 91 591 450 HOH HOH . J 4 HOH B 92 592 498 HOH HOH . J 4 HOH B 93 593 419 HOH HOH . J 4 HOH B 94 594 485 HOH HOH . J 4 HOH B 95 595 506 HOH HOH . J 4 HOH B 96 596 445 HOH HOH . J 4 HOH B 97 597 433 HOH HOH . J 4 HOH B 98 598 440 HOH HOH . J 4 HOH B 99 599 500 HOH HOH . J 4 HOH B 100 600 470 HOH HOH . J 4 HOH B 101 601 459 HOH HOH . J 4 HOH B 102 602 412 HOH HOH . J 4 HOH B 103 603 421 HOH HOH . J 4 HOH B 104 604 415 HOH HOH . J 4 HOH B 105 605 416 HOH HOH . J 4 HOH B 106 606 471 HOH HOH . J 4 HOH B 107 607 493 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 2 _atom_site.Cartn_x 2.543 _atom_site.Cartn_y 22.706 _atom_site.Cartn_z 26.967 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 33.55 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 402 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 333 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 1 #