data_5VK4 # _model_server_result.job_id CfQtoL9MdZvbB0hJk3AzRQ _model_server_result.datetime_utc '2024-11-05 00:40:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5vk4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":402}' # _entry.id 5VK4 # _exptl.entry_id 5VK4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5VK4 _cell.length_a 54.25 _cell.length_b 79.61 _cell.length_c 150.07 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5VK4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 71 A ASP 63 1_555 D MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.689 ? metalc ? metalc2 A OD2 ASP 100 A ASP 92 1_555 D MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc3 D MG MG . A MG 402 1_555 E O3G ANP . B ANP 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc4 B OE1 GLU 147 B GLU 139 1_555 F MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.739 ? metalc ? metalc5 E O1A ANP . B ANP 401 1_555 F MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5VK4 _atom_sites.fract_transf_matrix[1][1] 0.018433 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012561 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006664 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ANP A 1 401 401 ANP ANP . D 3 MG A 1 402 402 MG MG . E 2 ANP B 1 401 401 ANP ANP . F 3 MG B 1 402 403 MG MG . G 4 HOH A 1 501 57 HOH HOH . G 4 HOH A 2 502 23 HOH HOH . G 4 HOH A 3 503 22 HOH HOH . G 4 HOH A 4 504 6 HOH HOH . G 4 HOH A 5 505 20 HOH HOH . G 4 HOH A 6 506 44 HOH HOH . G 4 HOH A 7 507 27 HOH HOH . G 4 HOH A 8 508 1 HOH HOH . G 4 HOH A 9 509 45 HOH HOH . G 4 HOH A 10 510 49 HOH HOH . G 4 HOH A 11 511 5 HOH HOH . G 4 HOH A 12 512 10 HOH HOH . G 4 HOH A 13 513 56 HOH HOH . G 4 HOH A 14 514 42 HOH HOH . G 4 HOH A 15 515 28 HOH HOH . G 4 HOH A 16 516 43 HOH HOH . G 4 HOH A 17 517 3 HOH HOH . G 4 HOH A 18 518 31 HOH HOH . G 4 HOH A 19 519 2 HOH HOH . G 4 HOH A 20 520 32 HOH HOH . G 4 HOH A 21 521 14 HOH HOH . G 4 HOH A 22 522 30 HOH HOH . G 4 HOH A 23 523 25 HOH HOH . G 4 HOH A 24 524 24 HOH HOH . G 4 HOH A 25 525 19 HOH HOH . G 4 HOH A 26 526 34 HOH HOH . G 4 HOH A 27 527 46 HOH HOH . G 4 HOH A 28 528 33 HOH HOH . G 4 HOH A 29 529 17 HOH HOH . G 4 HOH A 30 530 58 HOH HOH . G 4 HOH A 31 531 18 HOH HOH . H 4 HOH B 1 501 54 HOH HOH . H 4 HOH B 2 502 55 HOH HOH . H 4 HOH B 3 503 51 HOH HOH . H 4 HOH B 4 504 37 HOH HOH . H 4 HOH B 5 505 48 HOH HOH . H 4 HOH B 6 506 40 HOH HOH . H 4 HOH B 7 507 47 HOH HOH . H 4 HOH B 8 508 11 HOH HOH . H 4 HOH B 9 509 8 HOH HOH . H 4 HOH B 10 510 9 HOH HOH . H 4 HOH B 11 511 53 HOH HOH . H 4 HOH B 12 512 50 HOH HOH . H 4 HOH B 13 513 16 HOH HOH . H 4 HOH B 14 514 7 HOH HOH . H 4 HOH B 15 515 52 HOH HOH . H 4 HOH B 16 516 39 HOH HOH . H 4 HOH B 17 517 38 HOH HOH . H 4 HOH B 18 518 15 HOH HOH . H 4 HOH B 19 519 4 HOH HOH . H 4 HOH B 20 520 36 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 1.197 _atom_site.Cartn_y 2.705 _atom_site.Cartn_z 5.951 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 89.66 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 402 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #