data_5VKE # _model_server_result.job_id 743gYDQo2qG1BvWaLmMM8A _model_server_result.datetime_utc '2024-11-27 22:02:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5vke # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":2002}' # _entry.id 5VKE # _exptl.entry_id 5VKE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 442.672 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(1S)-2-HYDROXY-1-[(NONANOYLOXY)METHYL]ETHYL MYRISTATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5VKE _cell.length_a 156.195 _cell.length_b 156.195 _cell.length_c 74.172 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5VKE _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_355 -x-2,-y,z -1 0 0 0 -1 0 0 0 1 -312.39 0 0 3 'crystal symmetry operation' 3_465 -y-1,x+1,z 0 -1 0 1 0 0 0 0 1 -156.195 156.195 0 4 'crystal symmetry operation' 4_445 y-1,-x-1,z 0 1 0 -1 0 0 0 0 1 -156.195 -156.195 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 A CYS 22 1_555 A SG CYS 96 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf2 B SG CYS 23 B CYS 23 1_555 B SG CYS 88 B CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf3 B SG CYS 134 B CYS 134 1_555 B SG CYS 194 B CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf4 C SG CYS 3 C CYS 28 1_555 C SG CYS 93 C CYS 118 4_445 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc1 C O THR 50 C THR 75 1_555 F K K . C K 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.819 ? metalc ? metalc2 C OG1 THR 50 C THR 75 1_555 F K K . C K 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.306 ? metalc ? metalc3 C O THR 50 C THR 75 1_555 F K K . C K 2003 3_465 ? ? ? ? ? ? ? ? ? ? ? ? 2.815 ? metalc ? metalc4 C OG1 THR 50 C THR 75 1_555 F K K . C K 2003 3_465 ? ? ? ? ? ? ? ? ? ? ? ? 3.31 ? metalc ? metalc5 C O GLY 52 C GLY 77 1_555 G K K . C K 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.77 ? metalc ? metalc6 C O GLY 52 C GLY 77 1_555 G K K . C K 2004 3_465 ? ? ? ? ? ? ? ? ? ? ? ? 2.77 ? metalc ? metalc7 F K K . C K 2003 1_555 K O HOH . C HOH 2120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.171 ? metalc ? metalc8 F K K . C K 2003 1_555 K O HOH . C HOH 2120 3_465 ? ? ? ? ? ? ? ? ? ? ? ? 3.171 ? metalc ? metalc9 H K K . C K 2005 1_555 K O HOH . C HOH 2115 2_355 ? ? ? ? ? ? ? ? ? ? ? ? 3.358 ? # _chem_comp.formula 'C26 H50 O5' _chem_comp.formula_weight 442.672 _chem_comp.id 1EM _chem_comp.mon_nstd_flag . _chem_comp.name '(1S)-2-HYDROXY-1-[(NONANOYLOXY)METHYL]ETHYL MYRISTATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O11 C11 1EM doub 1 n n C11 C12 1EM sing 2 n n C11 O41 1EM sing 3 n n C12 C13 1EM sing 4 n n C12 H121 1EM sing 5 n n C12 H122 1EM sing 6 n n C13 C14 1EM sing 7 n n C13 H131 1EM sing 8 n n C13 H132 1EM sing 9 n n C14 C15 1EM sing 10 n n C14 H141 1EM sing 11 n n C14 H142 1EM sing 12 n n C15 C16 1EM sing 13 n n C15 H151 1EM sing 14 n n C15 H152 1EM sing 15 n n C16 C17 1EM sing 16 n n C16 H161 1EM sing 17 n n C16 H162 1EM sing 18 n n C17 C18 1EM sing 19 n n C17 H171 1EM sing 20 n n C17 H172 1EM sing 21 n n C18 C19 1EM sing 22 n n C18 H181 1EM sing 23 n n C18 H182 1EM sing 24 n n C19 H191 1EM sing 25 n n C19 H192 1EM sing 26 n n C19 H193 1EM sing 27 n n O21 C21 1EM doub 28 n n C21 C22 1EM sing 29 n n C21 O42 1EM sing 30 n n C22 C23 1EM sing 31 n n C22 H221 1EM sing 32 n n C22 H222 1EM sing 33 n n C23 C24 1EM sing 34 n n C23 H231 1EM sing 35 n n C23 H232 1EM sing 36 n n C24 C25 1EM sing 37 n n C24 H241 1EM sing 38 n n C24 H242 1EM sing 39 n n C25 C26 1EM sing 40 n n C25 H251 1EM sing 41 n n C25 H252 1EM sing 42 n n C26 C27 1EM sing 43 n n C26 H261 1EM sing 44 n n C26 H262 1EM sing 45 n n C27 C28 1EM sing 46 n n C27 H271 1EM sing 47 n n C27 H272 1EM sing 48 n n C28 C29 1EM sing 49 n n C28 H281 1EM sing 50 n n C28 H282 1EM sing 51 n n C29 C30 1EM sing 52 n n C29 H291 1EM sing 53 n n C29 H292 1EM sing 54 n n C30 C31 1EM sing 55 n n C30 H301 1EM sing 56 n n C30 H302 1EM sing 57 n n C31 C32 1EM sing 58 n n C31 H311 1EM sing 59 n n C31 H312 1EM sing 60 n n C32 C33 1EM sing 61 n n C32 H321 1EM sing 62 n n C32 H322 1EM sing 63 n n C33 C34 1EM sing 64 n n C33 H331 1EM sing 65 n n C33 H332 1EM sing 66 n n C34 H341 1EM sing 67 n n C34 H342 1EM sing 68 n n C34 H343 1EM sing 69 n n C41 O41 1EM sing 70 n n C41 C42 1EM sing 71 n n C41 H411 1EM sing 72 n n C41 H412 1EM sing 73 n n C42 O42 1EM sing 74 n n C42 C43 1EM sing 75 n n C42 H42 1EM sing 76 n n C43 O43 1EM sing 77 n n C43 H431 1EM sing 78 n n C43 H432 1EM sing 79 n n O43 HO43 1EM sing 80 n n # _atom_sites.entry_id 5VKE _atom_sites.fract_transf_matrix[1][1] 0.006402 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006402 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013482 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 F09 C 1 2001 2001 F09 F09 . E 5 1EM C 1 2002 1001 1EM DGA . F 6 K C 1 2003 1 K K . G 6 K C 1 2004 2 K K . H 6 K C 1 2005 3 K K . I 7 HOH A 1 301 24 HOH HOH . I 7 HOH A 2 302 17 HOH HOH . I 7 HOH A 3 303 3 HOH HOH . I 7 HOH A 4 304 31 HOH HOH . I 7 HOH A 5 305 66 HOH HOH . I 7 HOH A 6 306 30 HOH HOH . I 7 HOH A 7 307 33 HOH HOH . I 7 HOH A 8 308 29 HOH HOH . I 7 HOH A 9 309 22 HOH HOH . I 7 HOH A 10 310 64 HOH HOH . I 7 HOH A 11 311 19 HOH HOH . I 7 HOH A 12 312 56 HOH HOH . I 7 HOH A 13 313 13 HOH HOH . I 7 HOH A 14 314 27 HOH HOH . I 7 HOH A 15 315 25 HOH HOH . I 7 HOH A 16 316 16 HOH HOH . I 7 HOH A 17 317 47 HOH HOH . I 7 HOH A 18 318 75 HOH HOH . I 7 HOH A 19 319 58 HOH HOH . I 7 HOH A 20 320 6 HOH HOH . I 7 HOH A 21 321 39 HOH HOH . I 7 HOH A 22 322 70 HOH HOH . I 7 HOH A 23 323 36 HOH HOH . I 7 HOH A 24 324 44 HOH HOH . I 7 HOH A 25 325 46 HOH HOH . J 7 HOH B 1 301 61 HOH HOH . J 7 HOH B 2 302 34 HOH HOH . J 7 HOH B 3 303 52 HOH HOH . J 7 HOH B 4 304 5 HOH HOH . J 7 HOH B 5 305 9 HOH HOH . J 7 HOH B 6 306 23 HOH HOH . J 7 HOH B 7 307 42 HOH HOH . J 7 HOH B 8 308 20 HOH HOH . J 7 HOH B 9 309 62 HOH HOH . J 7 HOH B 10 310 63 HOH HOH . J 7 HOH B 11 311 65 HOH HOH . J 7 HOH B 12 312 7 HOH HOH . J 7 HOH B 13 313 49 HOH HOH . J 7 HOH B 14 314 71 HOH HOH . J 7 HOH B 15 315 21 HOH HOH . J 7 HOH B 16 316 11 HOH HOH . J 7 HOH B 17 317 18 HOH HOH . J 7 HOH B 18 318 45 HOH HOH . J 7 HOH B 19 319 51 HOH HOH . J 7 HOH B 20 320 12 HOH HOH . J 7 HOH B 21 321 50 HOH HOH . J 7 HOH B 22 322 59 HOH HOH . J 7 HOH B 23 323 10 HOH HOH . J 7 HOH B 24 324 67 HOH HOH . J 7 HOH B 25 325 32 HOH HOH . J 7 HOH B 26 326 48 HOH HOH . J 7 HOH B 27 327 28 HOH HOH . J 7 HOH B 28 328 2 HOH HOH . J 7 HOH B 29 329 41 HOH HOH . J 7 HOH B 30 330 74 HOH HOH . J 7 HOH B 31 331 68 HOH HOH . J 7 HOH B 32 332 53 HOH HOH . J 7 HOH B 33 333 38 HOH HOH . J 7 HOH B 34 334 69 HOH HOH . J 7 HOH B 35 335 40 HOH HOH . J 7 HOH B 36 336 60 HOH HOH . J 7 HOH B 37 337 72 HOH HOH . K 7 HOH C 1 2101 14 HOH HOH . K 7 HOH C 2 2102 8 HOH HOH . K 7 HOH C 3 2103 4 HOH HOH . K 7 HOH C 4 2104 83 HOH HOH . K 7 HOH C 5 2105 37 HOH HOH . K 7 HOH C 6 2106 85 HOH HOH . K 7 HOH C 7 2107 84 HOH HOH . K 7 HOH C 8 2108 1 HOH HOH . K 7 HOH C 9 2109 54 HOH HOH . K 7 HOH C 10 2110 73 HOH HOH . K 7 HOH C 11 2111 26 HOH HOH . K 7 HOH C 12 2112 35 HOH HOH . K 7 HOH C 13 2113 15 HOH HOH . K 7 HOH C 14 2114 78 HOH HOH . K 7 HOH C 15 2115 87 HOH HOH . K 7 HOH C 16 2116 77 HOH HOH . K 7 HOH C 17 2117 43 HOH HOH . K 7 HOH C 18 2118 55 HOH HOH . K 7 HOH C 19 2119 57 HOH HOH . K 7 HOH C 20 2120 82 HOH HOH . K 7 HOH C 21 2121 86 HOH HOH . K 7 HOH C 22 2122 76 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O11 1EM . . . E 5 -140.288 -8.36 28.59 1 83.92 ? O11 1EM 2002 C 1 HETATM 2 C C11 1EM . . . E 5 -139.582 -9.297 28.736 1 75.88 ? C11 1EM 2002 C 1 HETATM 3 C C12 1EM . . . E 5 -139.555 -10.032 30.115 1 58.85 ? C12 1EM 2002 C 1 HETATM 4 C C13 1EM . . . E 5 -140.869 -9.711 30.876 1 52.26 ? C13 1EM 2002 C 1 HETATM 5 C C14 1EM . . . E 5 -140.769 -10.197 32.349 1 51.98 ? C14 1EM 2002 C 1 HETATM 6 C C15 1EM . . . E 5 -140.629 -8.975 33.296 1 51.31 ? C15 1EM 2002 C 1 HETATM 7 C C16 1EM . . . E 5 -141.296 -9.295 34.657 1 55.77 ? C16 1EM 2002 C 1 HETATM 8 C C17 1EM . . . E 5 -140.395 -8.793 35.815 1 56.85 ? C17 1EM 2002 C 1 HETATM 9 C C18 1EM . . . E 5 -141.197 -8.861 37.146 1 69.5 ? C18 1EM 2002 C 1 HETATM 10 C C19 1EM . . . E 5 -140.397 -9.685 38.205 1 74.97 ? C19 1EM 2002 C 1 HETATM 11 O O21 1EM . . . E 5 -136.13 -11.791 24.634 1 73.68 ? O21 1EM 2002 C 1 HETATM 12 C C21 1EM . . . E 5 -136.704 -11.396 25.591 1 96.01 ? C21 1EM 2002 C 1 HETATM 13 C C22 1EM . . . E 5 -136.087 -11.594 26.998 1 98.83 ? C22 1EM 2002 C 1 HETATM 14 C C23 1EM . . . E 5 -137.059 -12.422 27.891 1 92.76 ? C23 1EM 2002 C 1 HETATM 15 C C24 1EM . . . E 5 -136.524 -12.474 29.349 1 87.53 ? C24 1EM 2002 C 1 HETATM 16 C C25 1EM . . . E 5 -137.469 -13.366 30.219 1 91.52 ? C25 1EM 2002 C 1 HETATM 17 C C26 1EM . . . E 5 -136.995 -13.381 31.705 1 89.08 ? C26 1EM 2002 C 1 HETATM 18 C C27 1EM . . . E 5 -138.214 -13.689 32.643 1 81.98 ? C27 1EM 2002 C 1 HETATM 19 C C28 1EM . . . E 5 -138.337 -15.233 32.863 1 86.81 ? C28 1EM 2002 C 1 HETATM 20 C C29 1EM . . . E 5 -139.853 -15.631 33.028 1 87.5 ? C29 1EM 2002 C 1 HETATM 21 C C30 1EM . . . E 5 -139.959 -17.05 33.684 1 78.91 ? C30 1EM 2002 C 1 HETATM 22 C C31 1EM . . . E 5 -141.42 -17.6 33.542 1 77.86 ? C31 1EM 2002 C 1 HETATM 23 C C32 1EM . . . E 5 -141.758 -18.504 34.761 1 75.15 ? C32 1EM 2002 C 1 HETATM 24 C C33 1EM . . . E 5 -143.02 -19.355 34.463 1 70.37 ? C33 1EM 2002 C 1 HETATM 25 C C34 1EM . . . E 5 -142.595 -20.788 34.063 1 67.14 ? C34 1EM 2002 C 1 HETATM 26 C C41 1EM . . . E 5 -138.521 -8.721 26.672 1 81.29 ? C41 1EM 2002 C 1 HETATM 27 O O41 1EM . . . E 5 -138.756 -9.734 27.66 1 84.76 ? O41 1EM 2002 C 1 HETATM 28 C C42 1EM . . . E 5 -137.867 -9.328 25.416 1 97.33 ? C42 1EM 2002 C 1 HETATM 29 O O42 1EM . . . E 5 -137.957 -10.735 25.448 1 104.88 ? O42 1EM 2002 C 1 HETATM 30 C C43 1EM . . . E 5 -138.571 -8.798 24.173 1 95.18 ? C43 1EM 2002 C 1 HETATM 31 O O43 1EM . . . E 5 -138 -7.566 23.794 1 90.31 ? O43 1EM 2002 C 1 # _model_server_stats.io_time_ms 77 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 31 #