data_5VKE # _model_server_result.job_id n5-6y4lcj4CzzhgMy9BgUQ _model_server_result.datetime_utc '2024-11-09 02:27:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5vke # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":2003}' # _entry.id 5VKE # _exptl.entry_id 5VKE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 39.098 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'POTASSIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5VKE _cell.length_a 156.195 _cell.length_b 156.195 _cell.length_c 74.172 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5VKE _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_355 -x-2,-y,z -1 0 0 0 -1 0 0 0 1 -312.39 0 0 3 'crystal symmetry operation' 3_465 -y-1,x+1,z 0 -1 0 1 0 0 0 0 1 -156.195 156.195 0 4 'crystal symmetry operation' 4_445 y-1,-x-1,z 0 1 0 -1 0 0 0 0 1 -156.195 -156.195 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 F N N ? 6 G N N ? 6 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 A CYS 22 1_555 A SG CYS 96 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf2 B SG CYS 23 B CYS 23 1_555 B SG CYS 88 B CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf3 B SG CYS 134 B CYS 134 1_555 B SG CYS 194 B CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf4 C SG CYS 3 C CYS 28 1_555 C SG CYS 93 C CYS 118 4_445 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc1 C O THR 50 C THR 75 1_555 F K K . C K 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.819 ? metalc ? metalc2 C OG1 THR 50 C THR 75 1_555 F K K . C K 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.306 ? metalc ? metalc3 C O THR 50 C THR 75 1_555 F K K . C K 2003 3_465 ? ? ? ? ? ? ? ? ? ? ? ? 2.815 ? metalc ? metalc4 C OG1 THR 50 C THR 75 1_555 F K K . C K 2003 3_465 ? ? ? ? ? ? ? ? ? ? ? ? 3.31 ? metalc ? metalc5 C O GLY 52 C GLY 77 1_555 G K K . C K 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.77 ? metalc ? metalc6 C O GLY 52 C GLY 77 1_555 G K K . C K 2004 3_465 ? ? ? ? ? ? ? ? ? ? ? ? 2.77 ? metalc ? metalc7 F K K . C K 2003 1_555 K O HOH . C HOH 2120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.171 ? metalc ? metalc8 F K K . C K 2003 1_555 K O HOH . C HOH 2120 3_465 ? ? ? ? ? ? ? ? ? ? ? ? 3.171 ? metalc ? metalc9 H K K . C K 2005 1_555 K O HOH . C HOH 2115 2_355 ? ? ? ? ? ? ? ? ? ? ? ? 3.358 ? # _chem_comp.formula 'K 1' _chem_comp.formula_weight 39.098 _chem_comp.id K _chem_comp.mon_nstd_flag . _chem_comp.name 'POTASSIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5VKE _atom_sites.fract_transf_matrix[1][1] 0.006402 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006402 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013482 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 F09 C 1 2001 2001 F09 F09 . E 5 1EM C 1 2002 1001 1EM DGA . F 6 K C 1 2003 1 K K . G 6 K C 1 2004 2 K K . H 6 K C 1 2005 3 K K . I 7 HOH A 1 301 24 HOH HOH . I 7 HOH A 2 302 17 HOH HOH . I 7 HOH A 3 303 3 HOH HOH . I 7 HOH A 4 304 31 HOH HOH . I 7 HOH A 5 305 66 HOH HOH . I 7 HOH A 6 306 30 HOH HOH . I 7 HOH A 7 307 33 HOH HOH . I 7 HOH A 8 308 29 HOH HOH . I 7 HOH A 9 309 22 HOH HOH . I 7 HOH A 10 310 64 HOH HOH . I 7 HOH A 11 311 19 HOH HOH . I 7 HOH A 12 312 56 HOH HOH . I 7 HOH A 13 313 13 HOH HOH . I 7 HOH A 14 314 27 HOH HOH . I 7 HOH A 15 315 25 HOH HOH . I 7 HOH A 16 316 16 HOH HOH . I 7 HOH A 17 317 47 HOH HOH . I 7 HOH A 18 318 75 HOH HOH . I 7 HOH A 19 319 58 HOH HOH . I 7 HOH A 20 320 6 HOH HOH . I 7 HOH A 21 321 39 HOH HOH . I 7 HOH A 22 322 70 HOH HOH . I 7 HOH A 23 323 36 HOH HOH . I 7 HOH A 24 324 44 HOH HOH . I 7 HOH A 25 325 46 HOH HOH . J 7 HOH B 1 301 61 HOH HOH . J 7 HOH B 2 302 34 HOH HOH . J 7 HOH B 3 303 52 HOH HOH . J 7 HOH B 4 304 5 HOH HOH . J 7 HOH B 5 305 9 HOH HOH . J 7 HOH B 6 306 23 HOH HOH . J 7 HOH B 7 307 42 HOH HOH . J 7 HOH B 8 308 20 HOH HOH . J 7 HOH B 9 309 62 HOH HOH . J 7 HOH B 10 310 63 HOH HOH . J 7 HOH B 11 311 65 HOH HOH . J 7 HOH B 12 312 7 HOH HOH . J 7 HOH B 13 313 49 HOH HOH . J 7 HOH B 14 314 71 HOH HOH . J 7 HOH B 15 315 21 HOH HOH . J 7 HOH B 16 316 11 HOH HOH . J 7 HOH B 17 317 18 HOH HOH . J 7 HOH B 18 318 45 HOH HOH . J 7 HOH B 19 319 51 HOH HOH . J 7 HOH B 20 320 12 HOH HOH . J 7 HOH B 21 321 50 HOH HOH . J 7 HOH B 22 322 59 HOH HOH . J 7 HOH B 23 323 10 HOH HOH . J 7 HOH B 24 324 67 HOH HOH . J 7 HOH B 25 325 32 HOH HOH . J 7 HOH B 26 326 48 HOH HOH . J 7 HOH B 27 327 28 HOH HOH . J 7 HOH B 28 328 2 HOH HOH . J 7 HOH B 29 329 41 HOH HOH . J 7 HOH B 30 330 74 HOH HOH . J 7 HOH B 31 331 68 HOH HOH . J 7 HOH B 32 332 53 HOH HOH . J 7 HOH B 33 333 38 HOH HOH . J 7 HOH B 34 334 69 HOH HOH . J 7 HOH B 35 335 40 HOH HOH . J 7 HOH B 36 336 60 HOH HOH . J 7 HOH B 37 337 72 HOH HOH . K 7 HOH C 1 2101 14 HOH HOH . K 7 HOH C 2 2102 8 HOH HOH . K 7 HOH C 3 2103 4 HOH HOH . K 7 HOH C 4 2104 83 HOH HOH . K 7 HOH C 5 2105 37 HOH HOH . K 7 HOH C 6 2106 85 HOH HOH . K 7 HOH C 7 2107 84 HOH HOH . K 7 HOH C 8 2108 1 HOH HOH . K 7 HOH C 9 2109 54 HOH HOH . K 7 HOH C 10 2110 73 HOH HOH . K 7 HOH C 11 2111 26 HOH HOH . K 7 HOH C 12 2112 35 HOH HOH . K 7 HOH C 13 2113 15 HOH HOH . K 7 HOH C 14 2114 78 HOH HOH . K 7 HOH C 15 2115 87 HOH HOH . K 7 HOH C 16 2116 77 HOH HOH . K 7 HOH C 17 2117 43 HOH HOH . K 7 HOH C 18 2118 55 HOH HOH . K 7 HOH C 19 2119 57 HOH HOH . K 7 HOH C 20 2120 82 HOH HOH . K 7 HOH C 21 2121 86 HOH HOH . K 7 HOH C 22 2122 76 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol K _atom_site.label_atom_id K _atom_site.label_comp_id K _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 6 _atom_site.Cartn_x -156.18 _atom_site.Cartn_y 0 _atom_site.Cartn_z 39.809 _atom_site.occupancy 0.25 _atom_site.B_iso_or_equiv 42.95 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id K _atom_site.auth_comp_id K _atom_site.auth_seq_id 2003 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #