data_5VKG # _model_server_result.job_id D-zCMNI-A13bHZlLSL5AoQ _model_server_result.datetime_utc '2024-11-27 03:18:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5vkg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5VKG # _exptl.entry_id 5VKG _exptl.method 'SOLUTION NMR' # _entity.details ? _entity.formula_weight 331.413 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-methoxy-1-(5-methoxy-3H-imidazo[4,5-b]pyridin-2-yl)-3,5-dimethyl-2-(sulfanylmethyl)pyridin-1-ium _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 73 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 73 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id S20 _struct_conn.ptnr2_label_comp_id 4N1 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id 4N1 _struct_conn.ptnr2_auth_seq_id 201 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.028 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C16 H19 N4 O2 S 1' _chem_comp.formula_weight 331.413 _chem_comp.id 4N1 _chem_comp.mon_nstd_flag . _chem_comp.name 4-methoxy-1-(5-methoxy-3H-imidazo[4,5-b]pyridin-2-yl)-3,5-dimethyl-2-(sulfanylmethyl)pyridin-1-ium _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 4N1 sing 1 n n C1 N2 4N1 doub 2 n y C1 C6 4N1 sing 3 n y O1 C10 4N1 sing 4 n n N2 C3 4N1 sing 5 n y C3 C4 4N1 doub 6 n y C3 N7 4N1 sing 7 n y C4 C5 4N1 sing 8 n y C4 N9 4N1 sing 9 n y C5 C6 4N1 doub 10 n y N7 C8 4N1 sing 11 n y C8 N9 4N1 doub 12 n y C8 N11 4N1 sing 13 n n N11 C12 4N1 doub 14 n y N11 C16 4N1 sing 15 n y C12 C13 4N1 sing 16 n y C12 C17 4N1 sing 17 n n C13 C14 4N1 doub 18 n y C13 C18 4N1 sing 19 n n C14 O14 4N1 sing 20 n n C14 C15 4N1 sing 21 n y O14 C21 4N1 sing 22 n n C15 C16 4N1 doub 23 n y C15 C19 4N1 sing 24 n n C17 S20 4N1 sing 25 n n C5 H5 4N1 sing 26 n n C6 H6 4N1 sing 27 n n N7 H7 4N1 sing 28 n n C10 H101 4N1 sing 29 n n C10 H102 4N1 sing 30 n n C10 H103 4N1 sing 31 n n C16 H16 4N1 sing 32 n n C17 H171 4N1 sing 33 n n C18 H181 4N1 sing 34 n n C18 H182 4N1 sing 35 n n C18 H183 4N1 sing 36 n n C19 H191 4N1 sing 37 n n C19 H192 4N1 sing 38 n n C19 H193 4N1 sing 39 n n C21 H211 4N1 sing 40 n n C21 H212 4N1 sing 41 n n C21 H213 4N1 sing 42 n n C17 H172 4N1 sing 43 n n S20 H1 4N1 sing 44 n n # _atom_sites.entry_id 5VKG _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id 4N1 _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 201 _pdbx_nonpoly_scheme.auth_seq_num 201 _pdbx_nonpoly_scheme.pdb_mon_id 4N1 _pdbx_nonpoly_scheme.auth_mon_id 4N1 _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 4N1 . . . B 2 -34.72 25.8 -31.345 1 0 ? C1 4N1 201 A 1 HETATM 2 O O1 4N1 . . . B 2 -34.736 24.624 -30.714 1 0 ? O1 4N1 201 A 1 HETATM 3 N N2 4N1 . . . B 2 -33.994 26.719 -30.709 1 0 ? N2 4N1 201 A 1 HETATM 4 C C3 4N1 . . . B 2 -33.996 27.902 -31.283 1 0 ? C3 4N1 201 A 1 HETATM 5 C C4 4N1 . . . B 2 -34.653 28.299 -32.467 1 0 ? C4 4N1 201 A 1 HETATM 6 C C5 4N1 . . . B 2 -35.413 27.316 -33.124 1 0 ? C5 4N1 201 A 1 HETATM 7 C C6 4N1 . . . B 2 -35.442 26.051 -32.547 1 0 ? C6 4N1 201 A 1 HETATM 8 N N7 4N1 . . . B 2 -33.335 29.034 -30.839 1 0 ? N7 4N1 201 A 1 HETATM 9 C C8 4N1 . . . B 2 -33.613 30.017 -31.759 1 0 ? C8 4N1 201 A 1 HETATM 10 N N9 4N1 . . . B 2 -34.398 29.642 -32.736 1 0 ? N9 4N1 201 A 1 HETATM 11 C C10 4N1 . . . B 2 -35.678 24.408 -29.661 1 0 ? C10 4N1 201 A 1 HETATM 12 N N11 4N1 . . . B 2 -33.171 31.36 -31.518 1 0 ? N11 4N1 201 A 1 HETATM 13 C C12 4N1 . . . B 2 -32.439 32.097 -32.432 1 0 ? C12 4N1 201 A 1 HETATM 14 C C13 4N1 . . . B 2 -32.043 33.391 -32.073 1 0 ? C13 4N1 201 A 1 HETATM 15 C C14 4N1 . . . B 2 -32.354 33.899 -30.785 1 0 ? C14 4N1 201 A 1 HETATM 16 O O14 4N1 . . . B 2 -31.883 35.123 -30.545 1 0 ? O14 4N1 201 A 1 HETATM 17 C C15 4N1 . . . B 2 -33.162 33.143 -29.892 1 0 ? C15 4N1 201 A 1 HETATM 18 C C16 4N1 . . . B 2 -33.533 31.894 -30.314 1 0 ? C16 4N1 201 A 1 HETATM 19 C C17 4N1 . . . B 2 -32.118 31.494 -33.779 1 0 ? C17 4N1 201 A 1 HETATM 20 C C18 4N1 . . . B 2 -31.262 34.251 -33.035 1 0 ? C18 4N1 201 A 1 HETATM 21 C C19 4N1 . . . B 2 -33.729 33.648 -28.583 1 0 ? C19 4N1 201 A 1 HETATM 22 S S20 4N1 . . . B 2 -30.302 31.248 -34.071 1 0 ? S20 4N1 201 A 1 HETATM 23 C C21 4N1 . . . B 2 -32.64 36.341 -30.709 1 0 ? C21 4N1 201 A 1 HETATM 24 H H5 4N1 . . . B 2 -35.954 27.529 -34.04 1 0 ? H5 4N1 201 A 1 HETATM 25 H H6 4N1 . . . B 2 -36.01 25.251 -33.016 1 0 ? H6 4N1 201 A 1 HETATM 26 H H7 4N1 . . . B 2 -32.68 29.065 -30.068 1 0 ? H7 4N1 201 A 1 HETATM 27 H H101 4N1 . . . B 2 -35.923 23.349 -29.708 1 0 ? H101 4N1 201 A 1 HETATM 28 H H102 4N1 . . . B 2 -36.587 25.002 -29.817 1 0 ? H102 4N1 201 A 1 HETATM 29 H H103 4N1 . . . B 2 -35.242 24.64 -28.683 1 0 ? H103 4N1 201 A 1 HETATM 30 H H16 4N1 . . . B 2 -34.18 31.266 -29.714 1 0 ? H16 4N1 201 A 1 HETATM 31 H H171 4N1 . . . B 2 -32.536 32.084 -34.592 1 0 ? H171 4N1 201 A 1 HETATM 32 H H181 4N1 . . . B 2 -31.679 35.265 -33.089 1 0 ? H181 4N1 201 A 1 HETATM 33 H H182 4N1 . . . B 2 -31.288 33.83 -34.036 1 0 ? H182 4N1 201 A 1 HETATM 34 H H183 4N1 . . . B 2 -30.219 34.333 -32.717 1 0 ? H183 4N1 201 A 1 HETATM 35 H H191 4N1 . . . B 2 -32.938 33.695 -27.828 1 0 ? H191 4N1 201 A 1 HETATM 36 H H192 4N1 . . . B 2 -34.5 32.972 -28.202 1 0 ? H192 4N1 201 A 1 HETATM 37 H H193 4N1 . . . B 2 -34.162 34.648 -28.663 1 0 ? H193 4N1 201 A 1 HETATM 38 H H211 4N1 . . . B 2 -33.657 36.006 -30.909 1 0 ? H211 4N1 201 A 1 HETATM 39 H H212 4N1 . . . B 2 -32.267 36.916 -31.56 1 0 ? H212 4N1 201 A 1 HETATM 40 H H213 4N1 . . . B 2 -32.626 36.942 -29.798 1 0 ? H213 4N1 201 A 1 HETATM 41 H H172 4N1 . . . B 2 -32.555 30.496 -33.838 1 0 ? H172 4N1 201 A 1 # _model_server_stats.io_time_ms 30 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 45 _model_server_stats.query_time_ms 5070 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 41 #