data_5VKQ
#
_model_server_result.job_id            BymfIX2-09cVxRPFl8EmNg 
_model_server_result.datetime_utc      '2025-02-05 17:58:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5vkq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"V","auth_seq_id":1802}' 
#
_entry.id    5VKQ 
#
_exptl.entry_id    5VKQ 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              734.039 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-DIACYL-SN-GLYCERO-3-PHOSHOCHOLINE 
_entity.pdbx_number_of_molecules    32 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5VKQ 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               1 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5VKQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
? 2 M N N 
? 2 N N N 
? 2 O N N 
? 2 P N N 
? 2 Q N N 
? 2 R N N 
? 2 S N N 
? 2 T N N 
? 2 U N N 
? 2 V N N 
? 2 W N N 
? 2 X N N 
? 2 Y N N 
? 2 Z N N 
? 2 AA N N 
? 2 BA N N 
? 2 CA N N 
? 2 DA N N 
? 2 EA N N 
? 2 FA N N 
? 2 GA N N 
? 2 HA N N 
? 2 IA N N 
? 2 JA N N 
#
_chem_comp.formula           'C40 H80 N O8 P' 
_chem_comp.formula_weight    734.039 
_chem_comp.id                PCF 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-DIACYL-SN-GLYCERO-3-PHOSHOCHOLINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N C12 PCF sing 235 n n 
N C13 PCF sing 236 n n 
N C14 PCF sing 237 n n 
N C15 PCF sing 238 n n 
P O11 PCF sing 239 n n 
P O12 PCF doub 240 n n 
P O13 PCF sing 241 n n 
P O14 PCF sing 242 n n 
O11 C1 PCF sing 243 n n 
O13 C11 PCF sing 244 n n 
C11 C12 PCF sing 245 n n 
C11 H111 PCF sing 246 n n 
C11 H112 PCF sing 247 n n 
C12 H121 PCF sing 248 n n 
C12 H122 PCF sing 249 n n 
C13 H131 PCF sing 250 n n 
C13 H132 PCF sing 251 n n 
C13 H133 PCF sing 252 n n 
C14 H141 PCF sing 253 n n 
C14 H142 PCF sing 254 n n 
C14 H143 PCF sing 255 n n 
C15 H151 PCF sing 256 n n 
C15 H152 PCF sing 257 n n 
C15 H153 PCF sing 258 n n 
C1 C2 PCF sing 259 n n 
C1 H11 PCF sing 260 n n 
C1 H12 PCF sing 261 n n 
C2 C3 PCF sing 262 n n 
C2 O21 PCF sing 263 n n 
C2 H21 PCF sing 264 n n 
C3 O31 PCF sing 265 n n 
C3 H31 PCF sing 266 n n 
C3 H32 PCF sing 267 n n 
O31 C31 PCF sing 268 n n 
O32 C31 PCF doub 269 n n 
C31 C32 PCF sing 270 n n 
C32 C33 PCF sing 271 n n 
C32 H321 PCF sing 272 n n 
C32 H322 PCF sing 273 n n 
C33 C34 PCF sing 274 n n 
C33 H331 PCF sing 275 n n 
C33 H332 PCF sing 276 n n 
C34 C35 PCF sing 277 n n 
C34 H341 PCF sing 278 n n 
C34 H342 PCF sing 279 n n 
C35 C36 PCF sing 280 n n 
C35 H351 PCF sing 281 n n 
C35 H352 PCF sing 282 n n 
C36 C37 PCF sing 283 n n 
C36 H361 PCF sing 284 n n 
C36 H362 PCF sing 285 n n 
C37 C38 PCF sing 286 n n 
C37 H371 PCF sing 287 n n 
C37 H372 PCF sing 288 n n 
C38 C39 PCF sing 289 n n 
C38 H381 PCF sing 290 n n 
C38 H382 PCF sing 291 n n 
C39 C40 PCF sing 292 n n 
C39 H391 PCF sing 293 n n 
C39 H392 PCF sing 294 n n 
C40 C41 PCF sing 295 n n 
C40 H401 PCF sing 296 n n 
C40 H402 PCF sing 297 n n 
C41 C42 PCF sing 298 n n 
C41 H411 PCF sing 299 n n 
C41 H412 PCF sing 300 n n 
C42 C43 PCF sing 301 n n 
C42 H421 PCF sing 302 n n 
C42 H422 PCF sing 303 n n 
C43 C44 PCF sing 304 n n 
C43 H431 PCF sing 305 n n 
C43 H432 PCF sing 306 n n 
O21 C21 PCF sing 307 n n 
O22 C21 PCF doub 308 n n 
C21 C22 PCF sing 309 n n 
C22 C23 PCF sing 310 n n 
C22 H221 PCF sing 311 n n 
C22 H222 PCF sing 312 n n 
C23 C24 PCF sing 313 n n 
C23 H231 PCF sing 314 n n 
C23 H232 PCF sing 315 n n 
C24 C25 PCF sing 316 n n 
C24 H241 PCF sing 317 n n 
C24 H242 PCF sing 318 n n 
C25 C26 PCF sing 319 n n 
C25 H251 PCF sing 320 n n 
C25 H252 PCF sing 321 n n 
C26 C27 PCF sing 322 n n 
C26 H261 PCF sing 323 n n 
C26 H262 PCF sing 324 n n 
C27 C28 PCF sing 325 n n 
C27 H271 PCF sing 326 n n 
C27 H272 PCF sing 327 n n 
C28 C29 PCF sing 328 n n 
C28 H281 PCF sing 329 n n 
C28 H282 PCF sing 330 n n 
C29 C30 PCF sing 331 n n 
C29 H291 PCF sing 332 n n 
C29 H292 PCF sing 333 n n 
C30 C47 PCF sing 334 n n 
C30 H301 PCF sing 335 n n 
C30 H302 PCF sing 336 n n 
C47 C48 PCF sing 337 n n 
C47 H471 PCF sing 338 n n 
C47 H472 PCF sing 339 n n 
C48 C49 PCF sing 340 n n 
C48 H481 PCF sing 341 n n 
C48 H482 PCF sing 342 n n 
C49 C50 PCF sing 343 n n 
C49 H491 PCF sing 344 n n 
C49 H492 PCF sing 345 n n 
C50 C51 PCF sing 346 n n 
C50 H501 PCF sing 347 n n 
C50 H502 PCF sing 348 n n 
C51 C52 PCF sing 349 n n 
C51 H511 PCF sing 350 n n 
C51 H512 PCF sing 351 n n 
C52 H521 PCF sing 352 n n 
C52 H522 PCF sing 353 n n 
C52 H523 PCF sing 354 n n 
C44 C45 PCF sing 355 n n 
C44 H441 PCF sing 356 n n 
C44 H442 PCF sing 357 n n 
C45 C46 PCF sing 358 n n 
C45 H451 PCF sing 359 n n 
C45 H452 PCF sing 360 n n 
C46 H461 PCF sing 361 n n 
C46 H462 PCF sing 362 n n 
C46 H463 PCF sing 363 n n 
#
_atom_sites.entry_id                     5VKQ 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 PCF A 1 1801 5 PCF DRG . 
F 2 PCF A 1 1802 6 PCF DRG . 
G 2 PCF A 1 1803 18 PCF DRG . 
H 2 PCF A 1 1804 25 PCF DRG . 
I 2 PCF A 1 1805 27 PCF DRG . 
J 2 PCF A 1 1806 28 PCF DRG . 
K 2 PCF A 1 1807 31 PCF DRG . 
L 2 PCF A 1 1808 32 PCF DRG . 
M 2 PCF B 1 1801 1 PCF DRG . 
N 2 PCF B 1 1802 3 PCF DRG . 
O 2 PCF B 1 1803 4 PCF DRG . 
P 2 PCF B 1 1804 7 PCF DRG . 
Q 2 PCF B 1 1805 8 PCF DRG . 
R 2 PCF B 1 1806 13 PCF DRG . 
S 2 PCF B 1 1807 14 PCF DRG . 
T 2 PCF B 1 1808 26 PCF DRG . 
U 2 PCF C 1 1801 2 PCF DRG . 
V 2 PCF C 1 1802 9 PCF DRG . 
W 2 PCF C 1 1803 11 PCF DRG . 
X 2 PCF C 1 1804 12 PCF DRG . 
Y 2 PCF C 1 1805 15 PCF DRG . 
Z 2 PCF C 1 1806 16 PCF DRG . 
AA 2 PCF C 1 1807 21 PCF DRG . 
BA 2 PCF C 1 1808 22 PCF DRG . 
CA 2 PCF D 1 1801 10 PCF DRG . 
DA 2 PCF D 1 1802 17 PCF DRG . 
EA 2 PCF D 1 1803 19 PCF DRG . 
FA 2 PCF D 1 1804 20 PCF DRG . 
GA 2 PCF D 1 1805 23 PCF DRG . 
HA 2 PCF D 1 1806 24 PCF DRG . 
IA 2 PCF D 1 1807 29 PCF DRG . 
JA 2 PCF D 1 1808 30 PCF DRG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N PCF . . . V 2 268.031 266.798 364.254 1 20 ? N PCF 1802 C 1 
HETATM 2 P P PCF . . . V 2 269.496 265.538 359.783 1 20 ? P PCF 1802 C 1 
HETATM 3 O O11 PCF . . . V 2 268.763 265.663 358.339 1 20 ? O11 PCF 1802 C 1 
HETATM 4 O O12 PCF . . . V 2 270.341 264.323 359.881 1 20 ? O12 PCF 1802 C 1 
HETATM 5 O O13 PCF . . . V 2 268.348 265.623 360.909 1 20 ? O13 PCF 1802 C 1 
HETATM 6 O O14 PCF . . . V 2 270.369 266.889 359.916 1 20 ? O14 PCF 1802 C 1 
HETATM 7 C C11 PCF . . . V 2 268.287 266.752 361.784 1 20 ? C11 PCF 1802 C 1 
HETATM 8 C C12 PCF . . . V 2 267.387 266.431 362.981 1 20 ? C12 PCF 1802 C 1 
HETATM 9 C C13 PCF . . . V 2 269.231 265.973 364.462 1 20 ? C13 PCF 1802 C 1 
HETATM 10 C C14 PCF . . . V 2 268.41 268.218 364.231 1 20 ? C14 PCF 1802 C 1 
HETATM 11 C C15 PCF . . . V 2 267.093 266.572 365.361 1 20 ? C15 PCF 1802 C 1 
HETATM 12 C C1 PCF . . . V 2 267.685 264.793 357.98 1 20 ? C1 PCF 1802 C 1 
HETATM 13 C C2 PCF . . . V 2 266.391 265.601 357.862 1 20 ? C2 PCF 1802 C 1 
HETATM 14 C C3 PCF . . . V 2 266.418 266.442 356.583 1 20 ? C3 PCF 1802 C 1 
HETATM 15 O O31 PCF . . . V 2 267.733 266.99 356.395 1 20 ? O31 PCF 1802 C 1 
HETATM 16 O O32 PCF . . . V 2 268.323 269.204 356.393 1 20 ? O32 PCF 1802 C 1 
HETATM 17 C C31 PCF . . . V 2 267.727 268.255 355.883 1 20 ? C31 PCF 1802 C 1 
HETATM 18 C C32 PCF . . . V 2 266.913 268.438 354.602 1 20 ? C32 PCF 1802 C 1 
HETATM 19 C C33 PCF . . . V 2 267.189 267.276 353.647 1 20 ? C33 PCF 1802 C 1 
HETATM 20 C C34 PCF . . . V 2 265.961 267.045 352.764 1 20 ? C34 PCF 1802 C 1 
HETATM 21 C C35 PCF . . . V 2 266.039 265.653 352.139 1 20 ? C35 PCF 1802 C 1 
HETATM 22 C C36 PCF . . . V 2 266.92 265.706 350.892 1 20 ? C36 PCF 1802 C 1 
HETATM 23 C C37 PCF . . . V 2 266.159 266.406 349.766 1 20 ? C37 PCF 1802 C 1 
HETATM 24 C C38 PCF . . . V 2 266.41 265.665 348.452 1 20 ? C38 PCF 1802 C 1 
HETATM 25 O O21 PCF . . . V 2 265.27 264.712 357.819 1 20 ? O21 PCF 1802 C 1 
HETATM 26 O O22 PCF . . . V 2 263.701 265.7 359.16 1 20 ? O22 PCF 1802 C 1 
HETATM 27 C C21 PCF . . . V 2 264.122 265.408 358.042 1 20 ? C21 PCF 1802 C 1 
HETATM 28 C C22 PCF . . . V 2 263.358 265.825 356.783 1 20 ? C22 PCF 1802 C 1 
HETATM 29 C C23 PCF . . . V 2 262.392 264.712 356.377 1 20 ? C23 PCF 1802 C 1 
HETATM 30 C C24 PCF . . . V 2 262.611 264.368 354.903 1 20 ? C24 PCF 1802 C 1 
HETATM 31 C C25 PCF . . . V 2 261.259 264.185 354.219 1 20 ? C25 PCF 1802 C 1 
HETATM 32 C C26 PCF . . . V 2 261.239 262.842 353.493 1 20 ? C26 PCF 1802 C 1 
HETATM 33 C C27 PCF . . . V 2 262.38 262.796 352.478 1 20 ? C27 PCF 1802 C 1 
HETATM 34 C C28 PCF . . . V 2 261.805 262.577 351.078 1 20 ? C28 PCF 1802 C 1 
HETATM 35 C C29 PCF . . . V 2 262.576 261.455 350.382 1 20 ? C29 PCF 1802 C 1 
HETATM 36 C C30 PCF . . . V 2 262.709 261.45 348.859 1 20 ? C30 PCF 1802 C 1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    106 
_model_server_stats.query_time_ms           335 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           36 
#