data_5VL5 # _model_server_result.job_id '_Zweb38AcLi57K4hCLHq-Q' _model_server_result.datetime_utc '2025-07-15 14:39:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5vl5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 5VL5 # _exptl.entry_id 5VL5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 63.546 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COPPER (II) ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5VL5 _cell.length_a 57.71 _cell.length_b 57.71 _cell.length_c 184.04 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5VL5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z 0 -1 0 -1 0 0 0 0 -1 57.71 57.71 0 3 'crystal symmetry operation' 10_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 57.71 57.71 0 4 'crystal symmetry operation' 15_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NE2 _struct_conn.ptnr1_label_comp_id HIS _struct_conn.ptnr1_label_seq_id 87 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id HIS _struct_conn.ptnr1_auth_seq_id 87 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id CU _struct_conn.ptnr2_label_comp_id CU _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CU _struct_conn.ptnr2_auth_seq_id 202 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.648 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'Cu 2' _chem_comp.formula_weight 63.546 _chem_comp.id CU _chem_comp.mon_nstd_flag . _chem_comp.name 'COPPER (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5VL5 _atom_sites.fract_transf_matrix[1][1] 0.017328 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017328 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005434 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 S31 A 1 201 1 S31 S31 . C 3 CU A 1 202 1 CU CU . D 4 HOH A 1 301 149 HOH HOH . D 4 HOH A 2 302 105 HOH HOH . D 4 HOH A 3 303 13 HOH HOH . D 4 HOH A 4 304 58 HOH HOH . D 4 HOH A 5 305 110 HOH HOH . D 4 HOH A 6 306 2 HOH HOH . D 4 HOH A 7 307 22 HOH HOH . D 4 HOH A 8 308 51 HOH HOH . D 4 HOH A 9 309 85 HOH HOH . D 4 HOH A 10 310 100 HOH HOH . D 4 HOH A 11 311 35 HOH HOH . D 4 HOH A 12 312 44 HOH HOH . D 4 HOH A 13 313 25 HOH HOH . D 4 HOH A 14 314 33 HOH HOH . D 4 HOH A 15 315 28 HOH HOH . D 4 HOH A 16 316 61 HOH HOH . D 4 HOH A 17 317 78 HOH HOH . D 4 HOH A 18 318 3 HOH HOH . D 4 HOH A 19 319 152 HOH HOH . D 4 HOH A 20 320 1 HOH HOH . D 4 HOH A 21 321 79 HOH HOH . D 4 HOH A 22 322 7 HOH HOH . D 4 HOH A 23 323 65 HOH HOH . D 4 HOH A 24 324 19 HOH HOH . D 4 HOH A 25 325 66 HOH HOH . D 4 HOH A 26 326 11 HOH HOH . D 4 HOH A 27 327 31 HOH HOH . D 4 HOH A 28 328 141 HOH HOH . D 4 HOH A 29 329 6 HOH HOH . D 4 HOH A 30 330 73 HOH HOH . D 4 HOH A 31 331 124 HOH HOH . D 4 HOH A 32 332 71 HOH HOH . D 4 HOH A 33 333 8 HOH HOH . D 4 HOH A 34 334 17 HOH HOH . D 4 HOH A 35 335 37 HOH HOH . D 4 HOH A 36 337 27 HOH HOH . D 4 HOH A 37 338 112 HOH HOH . D 4 HOH A 38 339 5 HOH HOH . D 4 HOH A 39 340 140 HOH HOH . D 4 HOH A 40 341 36 HOH HOH . D 4 HOH A 41 342 12 HOH HOH . D 4 HOH A 42 343 39 HOH HOH . D 4 HOH A 43 344 46 HOH HOH . D 4 HOH A 44 345 47 HOH HOH . D 4 HOH A 45 346 122 HOH HOH . D 4 HOH A 46 347 81 HOH HOH . D 4 HOH A 47 348 16 HOH HOH . D 4 HOH A 48 349 26 HOH HOH . D 4 HOH A 49 350 123 HOH HOH . D 4 HOH A 50 351 59 HOH HOH . D 4 HOH A 51 352 23 HOH HOH . D 4 HOH A 52 353 63 HOH HOH . D 4 HOH A 53 354 15 HOH HOH . D 4 HOH A 54 355 80 HOH HOH . D 4 HOH A 55 356 52 HOH HOH . D 4 HOH A 56 357 82 HOH HOH . D 4 HOH A 57 358 20 HOH HOH . D 4 HOH A 58 359 30 HOH HOH . D 4 HOH A 59 360 54 HOH HOH . D 4 HOH A 60 361 49 HOH HOH . D 4 HOH A 61 362 4 HOH HOH . D 4 HOH A 62 363 34 HOH HOH . D 4 HOH A 63 364 42 HOH HOH . D 4 HOH A 64 365 32 HOH HOH . D 4 HOH A 65 366 9 HOH HOH . D 4 HOH A 66 367 77 HOH HOH . D 4 HOH A 67 368 57 HOH HOH . D 4 HOH A 68 369 67 HOH HOH . D 4 HOH A 69 370 148 HOH HOH . D 4 HOH A 70 371 24 HOH HOH . D 4 HOH A 71 372 29 HOH HOH . D 4 HOH A 72 373 38 HOH HOH . D 4 HOH A 73 374 41 HOH HOH . D 4 HOH A 74 375 72 HOH HOH . D 4 HOH A 75 376 151 HOH HOH . D 4 HOH A 76 377 120 HOH HOH . D 4 HOH A 77 378 18 HOH HOH . D 4 HOH A 78 379 143 HOH HOH . D 4 HOH A 79 380 90 HOH HOH . D 4 HOH A 80 381 62 HOH HOH . D 4 HOH A 81 382 101 HOH HOH . D 4 HOH A 82 383 43 HOH HOH . D 4 HOH A 83 384 60 HOH HOH . D 4 HOH A 84 385 40 HOH HOH . D 4 HOH A 85 386 146 HOH HOH . D 4 HOH A 86 387 147 HOH HOH . D 4 HOH A 87 388 121 HOH HOH . D 4 HOH A 88 389 142 HOH HOH . D 4 HOH A 89 390 136 HOH HOH . D 4 HOH A 90 391 150 HOH HOH . D 4 HOH A 91 392 89 HOH HOH . D 4 HOH A 92 393 135 HOH HOH . D 4 HOH A 93 394 131 HOH HOH . D 4 HOH A 94 395 69 HOH HOH . D 4 HOH A 95 396 125 HOH HOH . D 4 HOH A 96 397 21 HOH HOH . D 4 HOH A 97 398 106 HOH HOH . D 4 HOH A 98 399 117 HOH HOH . D 4 HOH A 99 400 129 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CU _atom_site.label_atom_id CU _atom_site.label_comp_id CU _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 22.246 _atom_site.Cartn_y 15.339 _atom_site.Cartn_z -22.241 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 55.08 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CU _atom_site.auth_comp_id CU _atom_site.auth_seq_id 202 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #