data_5VLA
#
_model_server_result.job_id            62hG39MsLP2Xj1Nig_mw0g 
_model_server_result.datetime_utc      '2025-07-16 05:10:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5vla 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":502}' 
#
_entry.id    5VLA 
#
_exptl.entry_id    5VLA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              40.078 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CALCIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5VLA 
_cell.length_a            70.267 
_cell.length_b            70.267 
_cell.length_c            157.254 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5VLA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 223 A CYS 223 1_555 A SG CYS 255 A CYS 255 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf2 A SG CYS 323 A CYS 323 1_555 A SG CYS 358 A CYS 358 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
disulf ? disulf3 A SG CYS 375 A CYS 375 1_555 A SG CYS 378 A CYS 378 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
metalc ? metalc1 A O PRO 331 A PRO 331 1_555 C CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? 
metalc ? metalc2 A O VAL 333 A VAL 333 1_555 C CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? 
metalc ? metalc3 A OD1 ASP 360 A ASP 360 1_555 C CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.605 ? 
metalc ? metalc4 A OD2 ASP 360 A ASP 360 1_555 C CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? 
metalc ? metalc5 C CA CA . A CA 501 1_555 E O HOH . A HOH 623 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? 
metalc ? metalc6 C CA CA . A CA 501 1_555 E O HOH . A HOH 650 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.584 ? 
metalc ? metalc7 C CA CA . A CA 501 1_555 E O HOH . A HOH 688 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? 
metalc ? metalc8 C CA CA . A CA 501 1_555 E O HOH . A HOH 690 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? 
metalc ? metalc9 D CA CA . A CA 502 1_555 E O HOH . A HOH 631 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? 
metalc ? metalc10 D CA CA . A CA 502 1_555 E O HOH . A HOH 635 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.522 ? 
metalc ? metalc11 D CA CA . A CA 502 1_555 E O HOH . A HOH 691 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.184 ? 
metalc ? metalc12 D CA CA . A CA 502 1_555 E O HOH . A HOH 708 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.733 ? 
#
_chem_comp.formula           'Ca 2' 
_chem_comp.formula_weight    40.078 
_chem_comp.id                CA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CALCIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5VLA 
_atom_sites.fract_transf_matrix[1][1]    0.014231 
_atom_sites.fract_transf_matrix[1][2]    0.008217 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016433 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006359 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 CA A 1 501 1 CA CA . 
D 3 CA A 1 502 2 CA CA . 
E 4 HOH A 1 601 8 HOH HOH . 
E 4 HOH A 2 602 46 HOH HOH . 
E 4 HOH A 3 603 83 HOH HOH . 
E 4 HOH A 4 604 79 HOH HOH . 
E 4 HOH A 5 605 12 HOH HOH . 
E 4 HOH A 6 606 13 HOH HOH . 
E 4 HOH A 7 607 105 HOH HOH . 
E 4 HOH A 8 608 22 HOH HOH . 
E 4 HOH A 9 609 112 HOH HOH . 
E 4 HOH A 10 610 5 HOH HOH . 
E 4 HOH A 11 611 45 HOH HOH . 
E 4 HOH A 12 612 134 HOH HOH . 
E 4 HOH A 13 613 16 HOH HOH . 
E 4 HOH A 14 614 76 HOH HOH . 
E 4 HOH A 15 615 39 HOH HOH . 
E 4 HOH A 16 616 47 HOH HOH . 
E 4 HOH A 17 617 119 HOH HOH . 
E 4 HOH A 18 618 75 HOH HOH . 
E 4 HOH A 19 619 49 HOH HOH . 
E 4 HOH A 20 620 114 HOH HOH . 
E 4 HOH A 21 621 2 HOH HOH . 
E 4 HOH A 22 622 88 HOH HOH . 
E 4 HOH A 23 623 142 HOH HOH . 
E 4 HOH A 24 624 57 HOH HOH . 
E 4 HOH A 25 625 137 HOH HOH . 
E 4 HOH A 26 626 7 HOH HOH . 
E 4 HOH A 27 627 73 HOH HOH . 
E 4 HOH A 28 628 50 HOH HOH . 
E 4 HOH A 29 629 27 HOH HOH . 
E 4 HOH A 30 630 38 HOH HOH . 
E 4 HOH A 31 631 145 HOH HOH . 
E 4 HOH A 32 632 121 HOH HOH . 
E 4 HOH A 33 633 31 HOH HOH . 
E 4 HOH A 34 634 67 HOH HOH . 
E 4 HOH A 35 635 144 HOH HOH . 
E 4 HOH A 36 636 118 HOH HOH . 
E 4 HOH A 37 637 69 HOH HOH . 
E 4 HOH A 38 638 72 HOH HOH . 
E 4 HOH A 39 639 35 HOH HOH . 
E 4 HOH A 40 640 61 HOH HOH . 
E 4 HOH A 41 641 96 HOH HOH . 
E 4 HOH A 42 642 141 HOH HOH . 
E 4 HOH A 43 643 94 HOH HOH . 
E 4 HOH A 44 644 82 HOH HOH . 
E 4 HOH A 45 645 98 HOH HOH . 
E 4 HOH A 46 646 14 HOH HOH . 
E 4 HOH A 47 647 6 HOH HOH . 
E 4 HOH A 48 648 40 HOH HOH . 
E 4 HOH A 49 649 78 HOH HOH . 
E 4 HOH A 50 650 1 HOH HOH . 
E 4 HOH A 51 651 81 HOH HOH . 
E 4 HOH A 52 652 18 HOH HOH . 
E 4 HOH A 53 653 86 HOH HOH . 
E 4 HOH A 54 654 56 HOH HOH . 
E 4 HOH A 55 655 85 HOH HOH . 
E 4 HOH A 56 656 54 HOH HOH . 
E 4 HOH A 57 657 68 HOH HOH . 
E 4 HOH A 58 658 17 HOH HOH . 
E 4 HOH A 59 659 95 HOH HOH . 
E 4 HOH A 60 660 64 HOH HOH . 
E 4 HOH A 61 661 93 HOH HOH . 
E 4 HOH A 62 662 92 HOH HOH . 
E 4 HOH A 63 663 41 HOH HOH . 
E 4 HOH A 64 664 48 HOH HOH . 
E 4 HOH A 65 665 15 HOH HOH . 
E 4 HOH A 66 666 9 HOH HOH . 
E 4 HOH A 67 667 77 HOH HOH . 
E 4 HOH A 68 668 74 HOH HOH . 
E 4 HOH A 69 669 90 HOH HOH . 
E 4 HOH A 70 670 42 HOH HOH . 
E 4 HOH A 71 671 89 HOH HOH . 
E 4 HOH A 72 672 10 HOH HOH . 
E 4 HOH A 73 673 80 HOH HOH . 
E 4 HOH A 74 674 140 HOH HOH . 
E 4 HOH A 75 675 28 HOH HOH . 
E 4 HOH A 76 676 97 HOH HOH . 
E 4 HOH A 77 677 84 HOH HOH . 
E 4 HOH A 78 678 34 HOH HOH . 
E 4 HOH A 79 679 30 HOH HOH . 
E 4 HOH A 80 680 101 HOH HOH . 
E 4 HOH A 81 681 3 HOH HOH . 
E 4 HOH A 82 682 20 HOH HOH . 
E 4 HOH A 83 683 108 HOH HOH . 
E 4 HOH A 84 684 126 HOH HOH . 
E 4 HOH A 85 685 11 HOH HOH . 
E 4 HOH A 86 686 125 HOH HOH . 
E 4 HOH A 87 687 24 HOH HOH . 
E 4 HOH A 88 688 107 HOH HOH . 
E 4 HOH A 89 689 4 HOH HOH . 
E 4 HOH A 90 690 25 HOH HOH . 
E 4 HOH A 91 691 120 HOH HOH . 
E 4 HOH A 92 692 63 HOH HOH . 
E 4 HOH A 93 693 44 HOH HOH . 
E 4 HOH A 94 694 123 HOH HOH . 
E 4 HOH A 95 695 53 HOH HOH . 
E 4 HOH A 96 696 87 HOH HOH . 
E 4 HOH A 97 697 110 HOH HOH . 
E 4 HOH A 98 698 37 HOH HOH . 
E 4 HOH A 99 699 65 HOH HOH . 
E 4 HOH A 100 700 111 HOH HOH . 
E 4 HOH A 101 701 36 HOH HOH . 
E 4 HOH A 102 702 116 HOH HOH . 
E 4 HOH A 103 703 99 HOH HOH . 
E 4 HOH A 104 704 135 HOH HOH . 
E 4 HOH A 105 705 127 HOH HOH . 
E 4 HOH A 106 706 130 HOH HOH . 
E 4 HOH A 107 707 115 HOH HOH . 
E 4 HOH A 108 708 143 HOH HOH . 
E 4 HOH A 109 709 21 HOH HOH . 
E 4 HOH A 110 710 117 HOH HOH . 
E 4 HOH A 111 711 58 HOH HOH . 
E 4 HOH A 112 712 26 HOH HOH . 
E 4 HOH A 113 713 100 HOH HOH . 
E 4 HOH A 114 714 113 HOH HOH . 
E 4 HOH A 115 715 129 HOH HOH . 
E 4 HOH A 116 716 132 HOH HOH . 
E 4 HOH A 117 717 70 HOH HOH . 
E 4 HOH A 118 718 138 HOH HOH . 
E 4 HOH A 119 719 106 HOH HOH . 
E 4 HOH A 120 720 124 HOH HOH . 
F 4 HOH Z 1 101 32 HOH HOH . 
F 4 HOH Z 2 102 19 HOH HOH . 
F 4 HOH Z 3 103 139 HOH HOH . 
F 4 HOH Z 4 104 23 HOH HOH . 
F 4 HOH Z 5 105 51 HOH HOH . 
F 4 HOH Z 6 106 43 HOH HOH . 
F 4 HOH Z 7 107 62 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CA 
_atom_site.label_atom_id         CA 
_atom_site.label_comp_id         CA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               4.889 
_atom_site.Cartn_y               0.342 
_atom_site.Cartn_z               1.48 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        86.91 
_atom_site.pdbx_formal_charge    2 
_atom_site.auth_atom_id          CA 
_atom_site.auth_comp_id          CA 
_atom_site.auth_seq_id           502 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              126 
_model_server_stats.parse_time_ms           51 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           536 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#