data_5VLG # _model_server_result.job_id ruh5BypXPms2kBuGkwWmwA _model_server_result.datetime_utc '2024-10-15 08:21:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5vlg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":300}' # _entry.id 5VLG # _exptl.entry_id 5VLG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 329.458 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MALACHITE GREEN' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.69 _cell.angle_gamma 90 _cell.entry_id 5VLG _cell.length_a 100.145 _cell.length_b 85.985 _cell.length_c 102.275 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5VLG _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 PISA dimeric 2 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,I,J,Q 1 1 C,D,K,L,R,S 2 1 E,F,M,N,T,U 3 1 G,H,O,P,V,W 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N # _chem_comp.formula 'C23 H25 N2 1' _chem_comp.formula_weight 329.458 _chem_comp.id MGR _chem_comp.mon_nstd_flag . _chem_comp.name 'MALACHITE GREEN' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MGR sing 237 n n C1 C8 MGR sing 238 n n C1 C14 MGR doub 239 n n C2 C3 MGR doub 240 n y C2 C7 MGR sing 241 n y C3 C4 MGR sing 242 n y C3 H31 MGR sing 243 n n C4 C5 MGR doub 244 n y C4 H41 MGR sing 245 n n C5 C6 MGR sing 246 n y C5 H51 MGR sing 247 n n C6 C7 MGR doub 248 n y C6 H61 MGR sing 249 n n C7 H71 MGR sing 250 n n C8 C9 MGR doub 251 n y C8 C13 MGR sing 252 n y C9 C10 MGR sing 253 n y C9 H91 MGR sing 254 n n C10 C11 MGR doub 255 n y C10 H101 MGR sing 256 n n C11 C12 MGR sing 257 n y C11 N2 MGR sing 258 n n C12 C13 MGR doub 259 n y C12 H121 MGR sing 260 n n C13 H131 MGR sing 261 n n C14 C15 MGR sing 262 n n C14 C19 MGR sing 263 n n C15 C16 MGR doub 264 n n C15 H151 MGR sing 265 n n C16 C17 MGR sing 266 n n C16 H161 MGR sing 267 n n C17 C18 MGR sing 268 n n C17 N3 MGR doub 269 n n C18 C19 MGR doub 270 n n C18 H181 MGR sing 271 n n C19 H191 MGR sing 272 n n C22 N2 MGR sing 273 n n C22 H221 MGR sing 274 n n C22 H222 MGR sing 275 n n C22 H223 MGR sing 276 n n C23 N2 MGR sing 277 n n C23 H231 MGR sing 278 n n C23 H232 MGR sing 279 n n C23 H233 MGR sing 280 n n C24 N3 MGR sing 281 n n C24 H241 MGR sing 282 n n C24 H242 MGR sing 283 n n C24 H243 MGR sing 284 n n C25 N3 MGR sing 285 n n C25 H251 MGR sing 286 n n C25 H252 MGR sing 287 n n C25 H253 MGR sing 288 n n # _atom_sites.entry_id 5VLG _atom_sites.fract_transf_matrix[1][1] 0.009986 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002067 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01163 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009985 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 MGR A 1 300 300 MGR MGR . J 2 MGR B 1 300 300 MGR MGR . K 2 MGR C 1 300 300 MGR MGR . L 2 MGR D 1 300 300 MGR MGR . M 2 MGR E 1 300 300 MGR MGR . N 2 MGR F 1 300 300 MGR MGR . O 2 MGR G 1 300 300 MGR MGR . P 2 MGR H 1 300 300 MGR MGR . Q 3 HOH B 1 401 5 HOH HOH . Q 3 HOH B 2 402 15 HOH HOH . Q 3 HOH B 3 403 6 HOH HOH . R 3 HOH C 1 401 1 HOH HOH . R 3 HOH C 2 402 9 HOH HOH . S 3 HOH D 1 401 7 HOH HOH . S 3 HOH D 2 402 10 HOH HOH . S 3 HOH D 3 403 4 HOH HOH . T 3 HOH E 1 401 17 HOH HOH . T 3 HOH E 2 402 8 HOH HOH . T 3 HOH E 3 403 11 HOH HOH . U 3 HOH F 1 401 3 HOH HOH . U 3 HOH F 2 402 13 HOH HOH . U 3 HOH F 3 403 2 HOH HOH . V 3 HOH G 1 401 12 HOH HOH . W 3 HOH H 1 401 14 HOH HOH . W 3 HOH H 2 402 16 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MGR . . . I 2 -32.958 22.704 -51.199 1 48.99 ? C1 MGR 300 A 1 HETATM 2 C C2 MGR . . . I 2 -33.504 23.439 -52.425 1 48.47 ? C2 MGR 300 A 1 HETATM 3 C C3 MGR . . . I 2 -33.552 22.792 -53.651 1 48.92 ? C3 MGR 300 A 1 HETATM 4 C C4 MGR . . . I 2 -34.052 23.447 -54.765 1 48.94 ? C4 MGR 300 A 1 HETATM 5 C C5 MGR . . . I 2 -34.501 24.754 -54.656 1 48.26 ? C5 MGR 300 A 1 HETATM 6 C C6 MGR . . . I 2 -34.45 25.403 -53.433 1 47.32 ? C6 MGR 300 A 1 HETATM 7 C C7 MGR . . . I 2 -33.953 24.746 -52.318 1 47.47 ? C7 MGR 300 A 1 HETATM 8 C C8 MGR . . . I 2 -32.384 23.495 -50.023 1 52.54 ? C8 MGR 300 A 1 HETATM 9 C C9 MGR . . . I 2 -32.848 23.258 -48.739 1 52.38 ? C9 MGR 300 A 1 HETATM 10 C C10 MGR . . . I 2 -32.328 23.972 -47.668 1 51.97 ? C10 MGR 300 A 1 HETATM 11 C C11 MGR . . . I 2 -31.345 24.927 -47.879 1 53.34 ? C11 MGR 300 A 1 HETATM 12 C C12 MGR . . . I 2 -30.882 25.16 -49.164 1 55.19 ? C12 MGR 300 A 1 HETATM 13 C C13 MGR . . . I 2 -31.399 24.446 -50.236 1 54.58 ? C13 MGR 300 A 1 HETATM 14 C C14 MGR . . . I 2 -33.236 21.422 -51.04 1 45.64 ? C14 MGR 300 A 1 HETATM 15 C C15 MGR . . . I 2 -32.157 20.457 -50.557 1 45.98 ? C15 MGR 300 A 1 HETATM 16 C C16 MGR . . . I 2 -32.474 18.975 -50.374 1 45.48 ? C16 MGR 300 A 1 HETATM 17 C C17 MGR . . . I 2 -33.874 18.439 -50.67 1 43.38 ? C17 MGR 300 A 1 HETATM 18 C C18 MGR . . . I 2 -34.952 19.411 -51.147 1 41.56 ? C18 MGR 300 A 1 HETATM 19 C C19 MGR . . . I 2 -34.636 20.894 -51.333 1 43.08 ? C19 MGR 300 A 1 HETATM 20 C C22 MGR . . . I 2 -29.369 26.004 -46.771 1 52.86 ? C22 MGR 300 A 1 HETATM 21 C C23 MGR . . . I 2 -31.613 26.138 -45.662 1 56.47 ? C23 MGR 300 A 1 HETATM 22 C C24 MGR . . . I 2 -33.285 16.403 -49.652 1 47.36 ? C24 MGR 300 A 1 HETATM 23 C C25 MGR . . . I 2 -35.066 16.525 -51.387 1 45.81 ? C25 MGR 300 A 1 HETATM 24 N N2 MGR . . . I 2 -30.786 25.684 -46.77 1 54.01 ? N2 MGR 300 A 1 HETATM 25 N N3 MGR . . . I 2 -34.129 17.22 -50.514 1 45.47 ? N3 MGR 300 A 1 HETATM 26 H H31 MGR . . . I 2 -33.254 21.914 -53.724 1 58.74 ? H31 MGR 300 A 1 HETATM 27 H H41 MGR . . . I 2 -34.083 23.012 -55.586 1 58.77 ? H41 MGR 300 A 1 HETATM 28 H H51 MGR . . . I 2 -34.832 25.196 -55.405 1 57.94 ? H51 MGR 300 A 1 HETATM 29 H H61 MGR . . . I 2 -34.751 26.28 -53.36 1 56.82 ? H61 MGR 300 A 1 HETATM 30 H H71 MGR . . . I 2 -33.922 25.182 -51.497 1 56.99 ? H71 MGR 300 A 1 HETATM 31 H H91 MGR . . . I 2 -33.508 22.619 -48.594 1 62.89 ? H91 MGR 300 A 1 HETATM 32 H H101 MGR . . . I 2 -32.642 23.811 -46.808 1 62.4 ? H101 MGR 300 A 1 HETATM 33 H H121 MGR . . . I 2 -30.222 25.799 -49.309 1 66.27 ? H121 MGR 300 A 1 HETATM 34 H H131 MGR . . . I 2 -31.086 24.608 -51.097 1 65.52 ? H131 MGR 300 A 1 HETATM 35 H H151 MGR . . . I 2 -31.301 20.773 -50.377 1 55.21 ? H151 MGR 300 A 1 HETATM 36 H H161 MGR . . . I 2 -31.809 18.393 -50.081 1 54.61 ? H161 MGR 300 A 1 HETATM 37 H H181 MGR . . . I 2 -35.807 19.096 -51.33 1 49.9 ? H181 MGR 300 A 1 HETATM 38 H H191 MGR . . . I 2 -35.299 21.476 -51.627 1 51.73 ? H191 MGR 300 A 1 HETATM 39 H H221 MGR . . . I 2 -29.172 26.599 -47.511 1 63.46 ? H221 MGR 300 A 1 HETATM 40 H H222 MGR . . . I 2 -29.136 26.439 -45.936 1 63.46 ? H222 MGR 300 A 1 HETATM 41 H H223 MGR . . . I 2 -28.853 25.188 -46.865 1 63.46 ? H223 MGR 300 A 1 HETATM 42 H H231 MGR . . . I 2 -31.893 27.053 -45.821 1 67.79 ? H231 MGR 300 A 1 HETATM 43 H H232 MGR . . . I 2 -32.396 25.569 -45.589 1 67.79 ? H232 MGR 300 A 1 HETATM 44 H H233 MGR . . . I 2 -31.103 26.093 -44.839 1 67.79 ? H233 MGR 300 A 1 HETATM 45 H H241 MGR . . . I 2 -33.646 15.503 -49.606 1 56.87 ? H241 MGR 300 A 1 HETATM 46 H H242 MGR . . . I 2 -32.386 16.373 -50.015 1 56.87 ? H242 MGR 300 A 1 HETATM 47 H H243 MGR . . . I 2 -33.263 16.788 -48.762 1 56.87 ? H243 MGR 300 A 1 HETATM 48 H H251 MGR . . . I 2 -34.61 15.797 -51.836 1 55 ? H251 MGR 300 A 1 HETATM 49 H H252 MGR . . . I 2 -35.413 17.145 -52.047 1 55 ? H252 MGR 300 A 1 HETATM 50 H H253 MGR . . . I 2 -35.799 16.171 -50.859 1 55 ? H253 MGR 300 A 1 # _model_server_stats.io_time_ms 33 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 342 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 50 #