data_5VLG
#
_model_server_result.job_id            TrYwP-NTNYRkAY3ziyCkHQ 
_model_server_result.datetime_utc      '2024-10-15 08:19:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5vlg 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":300}' 
#
_entry.id    5VLG 
#
_exptl.entry_id    5VLG 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              329.458 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MALACHITE GREEN' 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          101.69 
_cell.angle_gamma         90 
_cell.entry_id            5VLG 
_cell.length_a            100.145 
_cell.length_b            85.985 
_cell.length_c            102.275 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5VLG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
PISA dimeric 2 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,I,J,Q 1 1 
C,D,K,L,R,S 2 1 
E,F,M,N,T,U 3 1 
G,H,O,P,V,W 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
? 2 M N N 
? 2 N N N 
? 2 O N N 
? 2 P N N 
#
_chem_comp.formula           'C23 H25 N2 1' 
_chem_comp.formula_weight    329.458 
_chem_comp.id                MGR 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MALACHITE GREEN' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MGR sing 237 n n 
C1 C8 MGR sing 238 n n 
C1 C14 MGR doub 239 n n 
C2 C3 MGR doub 240 n y 
C2 C7 MGR sing 241 n y 
C3 C4 MGR sing 242 n y 
C3 H31 MGR sing 243 n n 
C4 C5 MGR doub 244 n y 
C4 H41 MGR sing 245 n n 
C5 C6 MGR sing 246 n y 
C5 H51 MGR sing 247 n n 
C6 C7 MGR doub 248 n y 
C6 H61 MGR sing 249 n n 
C7 H71 MGR sing 250 n n 
C8 C9 MGR doub 251 n y 
C8 C13 MGR sing 252 n y 
C9 C10 MGR sing 253 n y 
C9 H91 MGR sing 254 n n 
C10 C11 MGR doub 255 n y 
C10 H101 MGR sing 256 n n 
C11 C12 MGR sing 257 n y 
C11 N2 MGR sing 258 n n 
C12 C13 MGR doub 259 n y 
C12 H121 MGR sing 260 n n 
C13 H131 MGR sing 261 n n 
C14 C15 MGR sing 262 n n 
C14 C19 MGR sing 263 n n 
C15 C16 MGR doub 264 n n 
C15 H151 MGR sing 265 n n 
C16 C17 MGR sing 266 n n 
C16 H161 MGR sing 267 n n 
C17 C18 MGR sing 268 n n 
C17 N3 MGR doub 269 n n 
C18 C19 MGR doub 270 n n 
C18 H181 MGR sing 271 n n 
C19 H191 MGR sing 272 n n 
C22 N2 MGR sing 273 n n 
C22 H221 MGR sing 274 n n 
C22 H222 MGR sing 275 n n 
C22 H223 MGR sing 276 n n 
C23 N2 MGR sing 277 n n 
C23 H231 MGR sing 278 n n 
C23 H232 MGR sing 279 n n 
C23 H233 MGR sing 280 n n 
C24 N3 MGR sing 281 n n 
C24 H241 MGR sing 282 n n 
C24 H242 MGR sing 283 n n 
C24 H243 MGR sing 284 n n 
C25 N3 MGR sing 285 n n 
C25 H251 MGR sing 286 n n 
C25 H252 MGR sing 287 n n 
C25 H253 MGR sing 288 n n 
#
_atom_sites.entry_id                     5VLG 
_atom_sites.fract_transf_matrix[1][1]    0.009986 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002067 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01163 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009985 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 2 MGR A 1 300 300 MGR MGR . 
J 2 MGR B 1 300 300 MGR MGR . 
K 2 MGR C 1 300 300 MGR MGR . 
L 2 MGR D 1 300 300 MGR MGR . 
M 2 MGR E 1 300 300 MGR MGR . 
N 2 MGR F 1 300 300 MGR MGR . 
O 2 MGR G 1 300 300 MGR MGR . 
P 2 MGR H 1 300 300 MGR MGR . 
Q 3 HOH B 1 401 5 HOH HOH . 
Q 3 HOH B 2 402 15 HOH HOH . 
Q 3 HOH B 3 403 6 HOH HOH . 
R 3 HOH C 1 401 1 HOH HOH . 
R 3 HOH C 2 402 9 HOH HOH . 
S 3 HOH D 1 401 7 HOH HOH . 
S 3 HOH D 2 402 10 HOH HOH . 
S 3 HOH D 3 403 4 HOH HOH . 
T 3 HOH E 1 401 17 HOH HOH . 
T 3 HOH E 2 402 8 HOH HOH . 
T 3 HOH E 3 403 11 HOH HOH . 
U 3 HOH F 1 401 3 HOH HOH . 
U 3 HOH F 2 402 13 HOH HOH . 
U 3 HOH F 3 403 2 HOH HOH . 
V 3 HOH G 1 401 12 HOH HOH . 
W 3 HOH H 1 401 14 HOH HOH . 
W 3 HOH H 2 402 16 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MGR . . . K 2 -48.151 21.038 -1.14 1 43.09 ? C1 MGR 300 C 1 
HETATM 2 C C2 MGR . . . K 2 -47.019 21.029 -2.174 1 43.53 ? C2 MGR 300 C 1 
HETATM 3 C C3 MGR . . . K 2 -47.029 21.943 -3.217 1 42.98 ? C3 MGR 300 C 1 
HETATM 4 C C4 MGR . . . K 2 -46.004 21.947 -4.151 1 43.48 ? C4 MGR 300 C 1 
HETATM 5 C C5 MGR . . . K 2 -44.967 21.034 -4.049 1 44.2 ? C5 MGR 300 C 1 
HETATM 6 C C6 MGR . . . K 2 -44.953 20.119 -3.01 1 44.87 ? C6 MGR 300 C 1 
HETATM 7 C C7 MGR . . . K 2 -45.977 20.118 -2.074 1 44.95 ? C7 MGR 300 C 1 
HETATM 8 C C8 MGR . . . K 2 -48.615 19.734 -0.482 1 41.86 ? C8 MGR 300 C 1 
HETATM 9 C C9 MGR . . . K 2 -49.022 19.73 0.843 1 40.69 ? C9 MGR 300 C 1 
HETATM 10 C C10 MGR . . . K 2 -49.447 18.556 1.442 1 40.46 ? C10 MGR 300 C 1 
HETATM 11 C C11 MGR . . . K 2 -49.462 17.374 0.721 1 41.67 ? C11 MGR 300 C 1 
HETATM 12 C C12 MGR . . . K 2 -49.054 17.375 -0.602 1 41.62 ? C12 MGR 300 C 1 
HETATM 13 C C13 MGR . . . K 2 -48.634 18.551 -1.205 1 41.37 ? C13 MGR 300 C 1 
HETATM 14 C C14 MGR . . . K 2 -48.598 22.201 -0.695 1 43.24 ? C14 MGR 300 C 1 
HETATM 15 C C15 MGR . . . K 2 -50.084 22.402 -0.412 1 43.54 ? C15 MGR 300 C 1 
HETATM 16 C C16 MGR . . . K 2 -50.599 23.744 0.097 1 46.43 ? C16 MGR 300 C 1 
HETATM 17 C C17 MGR . . . K 2 -49.636 24.907 0.327 1 49.63 ? C17 MGR 300 C 1 
HETATM 18 C C18 MGR . . . K 2 -48.147 24.704 0.048 1 47.64 ? C18 MGR 300 C 1 
HETATM 19 C C19 MGR . . . K 2 -47.631 23.359 -0.462 1 44.81 ? C19 MGR 300 C 1 
HETATM 20 C C22 MGR . . . K 2 -50.423 15.057 0.522 1 45.16 ? C22 MGR 300 C 1 
HETATM 21 C C23 MGR . . . K 2 -49.839 15.983 2.79 1 45.27 ? C23 MGR 300 C 1 
HETATM 22 C C24 MGR . . . K 2 -51.311 26.058 1.501 1 56.58 ? C24 MGR 300 C 1 
HETATM 23 C C25 MGR . . . K 2 -49.532 27.265 0.237 1 54.22 ? C25 MGR 300 C 1 
HETATM 24 N N2 MGR . . . K 2 -49.906 16.138 1.346 1 43.92 ? N2 MGR 300 C 1 
HETATM 25 N N3 MGR . . . K 2 -50.066 26.008 0.748 1 54.04 ? N3 MGR 300 C 1 
HETATM 26 H H31 MGR . . . K 2 -47.722 22.559 -3.288 1 51.61 ? H31 MGR 300 C 1 
HETATM 27 H H41 MGR . . . K 2 -46.016 22.56 -4.85 1 52.21 ? H41 MGR 300 C 1 
HETATM 28 H H51 MGR . . . K 2 -44.282 21.035 -4.678 1 53.07 ? H51 MGR 300 C 1 
HETATM 29 H H61 MGR . . . K 2 -44.258 19.506 -2.939 1 53.88 ? H61 MGR 300 C 1 
HETATM 30 H H71 MGR . . . K 2 -45.965 19.504 -1.376 1 53.97 ? H71 MGR 300 C 1 
HETATM 31 H H91 MGR . . . K 2 -49.014 20.522 1.331 1 48.87 ? H91 MGR 300 C 1 
HETATM 32 H H101 MGR . . . K 2 -49.718 18.56 2.332 1 48.59 ? H101 MGR 300 C 1 
HETATM 33 H H121 MGR . . . K 2 -49.066 16.584 -1.09 1 49.98 ? H121 MGR 300 C 1 
HETATM 34 H H131 MGR . . . K 2 -48.361 18.546 -2.094 1 49.67 ? H131 MGR 300 C 1 
HETATM 35 H H151 MGR . . . K 2 -50.68 21.701 -0.553 1 52.28 ? H151 MGR 300 C 1 
HETATM 36 H H161 MGR . . . K 2 -51.507 23.857 0.265 1 55.75 ? H161 MGR 300 C 1 
HETATM 37 H H181 MGR . . . K 2 -47.552 25.405 0.186 1 57.21 ? H181 MGR 300 C 1 
HETATM 38 H H191 MGR . . . K 2 -46.724 23.247 -0.632 1 53.8 ? H191 MGR 300 C 1 
HETATM 39 H H221 MGR . . . K 2 -50.747 14.343 1.093 1 54.23 ? H221 MGR 300 C 1 
HETATM 40 H H222 MGR . . . K 2 -51.151 15.389 -0.026 1 54.23 ? H222 MGR 300 C 1 
HETATM 41 H H223 MGR . . . K 2 -49.716 14.72 -0.049 1 54.23 ? H223 MGR 300 C 1 
HETATM 42 H H231 MGR . . . K 2 -50.619 16.393 3.195 1 54.36 ? H231 MGR 300 C 1 
HETATM 43 H H232 MGR . . . K 2 -49.817 15.039 3.013 1 54.36 ? H232 MGR 300 C 1 
HETATM 44 H H233 MGR . . . K 2 -49.037 16.413 3.124 1 54.36 ? H233 MGR 300 C 1 
HETATM 45 H H241 MGR . . . K 2 -51.243 25.479 2.277 1 67.93 ? H241 MGR 300 C 1 
HETATM 46 H H242 MGR . . . K 2 -52.042 25.758 0.938 1 67.93 ? H242 MGR 300 C 1 
HETATM 47 H H243 MGR . . . K 2 -51.478 26.968 1.79 1 67.93 ? H243 MGR 300 C 1 
HETATM 48 H H251 MGR . . . K 2 -50.247 27.778 -0.171 1 65.09 ? H251 MGR 300 C 1 
HETATM 49 H H252 MGR . . . K 2 -49.146 27.773 0.967 1 65.09 ? H252 MGR 300 C 1 
HETATM 50 H H253 MGR . . . K 2 -48.849 27.08 -0.426 1 65.09 ? H253 MGR 300 C 1 
#
_model_server_stats.io_time_ms              49 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    27 
_model_server_stats.query_time_ms           358 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           50 
#