data_5VLG
#
_model_server_result.job_id            HPSdQpHqFZ6tbTAFaCKnAg 
_model_server_result.datetime_utc      '2024-10-15 08:22:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5vlg 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":300}' 
#
_entry.id    5VLG 
#
_exptl.entry_id    5VLG 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              329.458 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MALACHITE GREEN' 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          101.69 
_cell.angle_gamma         90 
_cell.entry_id            5VLG 
_cell.length_a            100.145 
_cell.length_b            85.985 
_cell.length_c            102.275 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5VLG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
PISA dimeric 2 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,I,J,Q 1 1 
C,D,K,L,R,S 2 1 
E,F,M,N,T,U 3 1 
G,H,O,P,V,W 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
? 2 M N N 
? 2 N N N 
? 2 O N N 
? 2 P N N 
#
_chem_comp.formula           'C23 H25 N2 1' 
_chem_comp.formula_weight    329.458 
_chem_comp.id                MGR 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MALACHITE GREEN' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MGR sing 237 n n 
C1 C8 MGR sing 238 n n 
C1 C14 MGR doub 239 n n 
C2 C3 MGR doub 240 n y 
C2 C7 MGR sing 241 n y 
C3 C4 MGR sing 242 n y 
C3 H31 MGR sing 243 n n 
C4 C5 MGR doub 244 n y 
C4 H41 MGR sing 245 n n 
C5 C6 MGR sing 246 n y 
C5 H51 MGR sing 247 n n 
C6 C7 MGR doub 248 n y 
C6 H61 MGR sing 249 n n 
C7 H71 MGR sing 250 n n 
C8 C9 MGR doub 251 n y 
C8 C13 MGR sing 252 n y 
C9 C10 MGR sing 253 n y 
C9 H91 MGR sing 254 n n 
C10 C11 MGR doub 255 n y 
C10 H101 MGR sing 256 n n 
C11 C12 MGR sing 257 n y 
C11 N2 MGR sing 258 n n 
C12 C13 MGR doub 259 n y 
C12 H121 MGR sing 260 n n 
C13 H131 MGR sing 261 n n 
C14 C15 MGR sing 262 n n 
C14 C19 MGR sing 263 n n 
C15 C16 MGR doub 264 n n 
C15 H151 MGR sing 265 n n 
C16 C17 MGR sing 266 n n 
C16 H161 MGR sing 267 n n 
C17 C18 MGR sing 268 n n 
C17 N3 MGR doub 269 n n 
C18 C19 MGR doub 270 n n 
C18 H181 MGR sing 271 n n 
C19 H191 MGR sing 272 n n 
C22 N2 MGR sing 273 n n 
C22 H221 MGR sing 274 n n 
C22 H222 MGR sing 275 n n 
C22 H223 MGR sing 276 n n 
C23 N2 MGR sing 277 n n 
C23 H231 MGR sing 278 n n 
C23 H232 MGR sing 279 n n 
C23 H233 MGR sing 280 n n 
C24 N3 MGR sing 281 n n 
C24 H241 MGR sing 282 n n 
C24 H242 MGR sing 283 n n 
C24 H243 MGR sing 284 n n 
C25 N3 MGR sing 285 n n 
C25 H251 MGR sing 286 n n 
C25 H252 MGR sing 287 n n 
C25 H253 MGR sing 288 n n 
#
_atom_sites.entry_id                     5VLG 
_atom_sites.fract_transf_matrix[1][1]    0.009986 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002067 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01163 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009985 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 2 MGR A 1 300 300 MGR MGR . 
J 2 MGR B 1 300 300 MGR MGR . 
K 2 MGR C 1 300 300 MGR MGR . 
L 2 MGR D 1 300 300 MGR MGR . 
M 2 MGR E 1 300 300 MGR MGR . 
N 2 MGR F 1 300 300 MGR MGR . 
O 2 MGR G 1 300 300 MGR MGR . 
P 2 MGR H 1 300 300 MGR MGR . 
Q 3 HOH B 1 401 5 HOH HOH . 
Q 3 HOH B 2 402 15 HOH HOH . 
Q 3 HOH B 3 403 6 HOH HOH . 
R 3 HOH C 1 401 1 HOH HOH . 
R 3 HOH C 2 402 9 HOH HOH . 
S 3 HOH D 1 401 7 HOH HOH . 
S 3 HOH D 2 402 10 HOH HOH . 
S 3 HOH D 3 403 4 HOH HOH . 
T 3 HOH E 1 401 17 HOH HOH . 
T 3 HOH E 2 402 8 HOH HOH . 
T 3 HOH E 3 403 11 HOH HOH . 
U 3 HOH F 1 401 3 HOH HOH . 
U 3 HOH F 2 402 13 HOH HOH . 
U 3 HOH F 3 403 2 HOH HOH . 
V 3 HOH G 1 401 12 HOH HOH . 
W 3 HOH H 1 401 14 HOH HOH . 
W 3 HOH H 2 402 16 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MGR . . . L 2 -47.528 12.421 18.763 1 66.94 ? C1 MGR 300 D 1 
HETATM 2 C C2 MGR . . . L 2 -47.548 13.214 20.071 1 69.13 ? C2 MGR 300 D 1 
HETATM 3 C C3 MGR . . . L 2 -47.149 12.625 21.261 1 70.49 ? C3 MGR 300 D 1 
HETATM 4 C C4 MGR . . . L 2 -47.174 13.356 22.438 1 71.47 ? C4 MGR 300 D 1 
HETATM 5 C C5 MGR . . . L 2 -47.602 14.674 22.428 1 70.94 ? C5 MGR 300 D 1 
HETATM 6 C C6 MGR . . . L 2 -48.007 15.261 21.243 1 70.09 ? C6 MGR 300 D 1 
HETATM 7 C C7 MGR . . . L 2 -47.979 14.532 20.066 1 69.89 ? C7 MGR 300 D 1 
HETATM 8 C C8 MGR . . . L 2 -48.595 12.748 17.717 1 64.42 ? C8 MGR 300 D 1 
HETATM 9 C C9 MGR . . . L 2 -48.256 12.927 16.389 1 62.92 ? C9 MGR 300 D 1 
HETATM 10 C C10 MGR . . . L 2 -49.238 13.228 15.457 1 62.67 ? C10 MGR 300 D 1 
HETATM 11 C C11 MGR . . . L 2 -50.562 13.359 15.85 1 63.98 ? C11 MGR 300 D 1 
HETATM 12 C C12 MGR . . . L 2 -50.896 13.183 17.182 1 64.92 ? C12 MGR 300 D 1 
HETATM 13 C C13 MGR . . . L 2 -49.916 12.88 18.112 1 64.88 ? C13 MGR 300 D 1 
HETATM 14 C C14 MGR . . . L 2 -46.508 11.623 18.482 1 67.94 ? C14 MGR 300 D 1 
HETATM 15 C C15 MGR . . . L 2 -46.721 10.332 17.693 1 68.93 ? C15 MGR 300 D 1 
HETATM 16 C C16 MGR . . . L 2 -45.538 9.415 17.376 1 69.02 ? C16 MGR 300 D 1 
HETATM 17 C C17 MGR . . . L 2 -44.129 9.774 17.845 1 69.48 ? C17 MGR 300 D 1 
HETATM 18 C C18 MGR . . . L 2 -43.917 11.068 18.631 1 68.59 ? C18 MGR 300 D 1 
HETATM 19 C C19 MGR . . . L 2 -45.099 11.983 18.948 1 68.32 ? C19 MGR 300 D 1 
HETATM 20 C C22 MGR . . . L 2 -52.992 13.719 15.301 1 64.08 ? C22 MGR 300 D 1 
HETATM 21 C C23 MGR . . . L 2 -51.252 13.941 13.491 1 67.54 ? C23 MGR 300 D 1 
HETATM 22 C C24 MGR . . . L 2 -43.202 8.156 16.414 1 71.04 ? C24 MGR 300 D 1 
HETATM 23 C C25 MGR . . . L 2 -42.12 8.766 18.575 1 73.94 ? C25 MGR 300 D 1 
HETATM 24 N N2 MGR . . . L 2 -51.6 13.675 14.88 1 65.65 ? N2 MGR 300 D 1 
HETATM 25 N N3 MGR . . . L 2 -43.159 9.021 17.583 1 71.68 ? N3 MGR 300 D 1 
HETATM 26 H H31 MGR . . . L 2 -46.86 11.741 21.268 1 84.63 ? H31 MGR 300 D 1 
HETATM 27 H H41 MGR . . . L 2 -46.904 12.961 23.235 1 85.8 ? H41 MGR 300 D 1 
HETATM 28 H H51 MGR . . . L 2 -47.62 15.162 23.219 1 85.16 ? H51 MGR 300 D 1 
HETATM 29 H H61 MGR . . . L 2 -48.293 16.146 21.236 1 84.14 ? H61 MGR 300 D 1 
HETATM 30 H H71 MGR . . . L 2 -48.25 14.928 19.269 1 83.91 ? H71 MGR 300 D 1 
HETATM 31 H H91 MGR . . . L 2 -47.37 12.841 16.119 1 75.54 ? H91 MGR 300 D 1 
HETATM 32 H H101 MGR . . . L 2 -49.008 13.346 14.564 1 75.24 ? H101 MGR 300 D 1 
HETATM 33 H H121 MGR . . . L 2 -51.782 13.267 17.453 1 77.94 ? H121 MGR 300 D 1 
HETATM 34 H H131 MGR . . . L 2 -50.145 12.764 19.006 1 77.89 ? H131 MGR 300 D 1 
HETATM 35 H H151 MGR . . . L 2 -47.575 10.102 17.405 1 82.75 ? H151 MGR 300 D 1 
HETATM 36 H H161 MGR . . . L 2 -45.679 8.631 16.896 1 82.86 ? H161 MGR 300 D 1 
HETATM 37 H H181 MGR . . . L 2 -43.064 11.297 18.921 1 82.34 ? H181 MGR 300 D 1 
HETATM 38 H H191 MGR . . . L 2 -44.958 12.766 19.429 1 82.02 ? H191 MGR 300 D 1 
HETATM 39 H H221 MGR . . . L 2 -53.559 13.863 14.527 1 76.93 ? H221 MGR 300 D 1 
HETATM 40 H H222 MGR . . . L 2 -53.229 12.878 15.723 1 76.93 ? H222 MGR 300 D 1 
HETATM 41 H H223 MGR . . . L 2 -53.116 14.444 15.933 1 76.93 ? H223 MGR 300 D 1 
HETATM 42 H H231 MGR . . . L 2 -50.51 14.564 13.457 1 81.09 ? H231 MGR 300 D 1 
HETATM 43 H H232 MGR . . . L 2 -52.017 14.325 13.034 1 81.09 ? H232 MGR 300 D 1 
HETATM 44 H H233 MGR . . . L 2 -50.999 13.112 13.056 1 81.09 ? H233 MGR 300 D 1 
HETATM 45 H H241 MGR . . . L 2 -43.928 7.52 16.508 1 85.28 ? H241 MGR 300 D 1 
HETATM 46 H H242 MGR . . . L 2 -43.345 8.694 15.619 1 85.28 ? H242 MGR 300 D 1 
HETATM 47 H H243 MGR . . . L 2 -42.361 7.679 16.333 1 85.28 ? H243 MGR 300 D 1 
HETATM 48 H H251 MGR . . . L 2 -41.263 9.059 18.229 1 88.77 ? H251 MGR 300 D 1 
HETATM 49 H H252 MGR . . . L 2 -42.324 9.253 19.389 1 88.77 ? H252 MGR 300 D 1 
HETATM 50 H H253 MGR . . . L 2 -42.083 7.816 18.767 1 88.77 ? H253 MGR 300 D 1 
#
_model_server_stats.io_time_ms              33 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    31 
_model_server_stats.query_time_ms           294 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           50 
#