data_5VLG # _model_server_result.job_id npU1aBhMJXwnJzTN3Y7yDA _model_server_result.datetime_utc '2024-11-29 07:13:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5vlg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":300}' # _entry.id 5VLG # _exptl.entry_id 5VLG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 329.458 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MALACHITE GREEN' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.69 _cell.angle_gamma 90 _cell.entry_id 5VLG _cell.length_a 100.145 _cell.length_b 85.985 _cell.length_c 102.275 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5VLG _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 PISA dimeric 2 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,I,J,Q 1 1 C,D,K,L,R,S 2 1 E,F,M,N,T,U 3 1 G,H,O,P,V,W 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N # _chem_comp.formula 'C23 H25 N2 1' _chem_comp.formula_weight 329.458 _chem_comp.id MGR _chem_comp.mon_nstd_flag . _chem_comp.name 'MALACHITE GREEN' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MGR sing 237 n n C1 C8 MGR sing 238 n n C1 C14 MGR doub 239 n n C2 C3 MGR doub 240 n y C2 C7 MGR sing 241 n y C3 C4 MGR sing 242 n y C3 H31 MGR sing 243 n n C4 C5 MGR doub 244 n y C4 H41 MGR sing 245 n n C5 C6 MGR sing 246 n y C5 H51 MGR sing 247 n n C6 C7 MGR doub 248 n y C6 H61 MGR sing 249 n n C7 H71 MGR sing 250 n n C8 C9 MGR doub 251 n y C8 C13 MGR sing 252 n y C9 C10 MGR sing 253 n y C9 H91 MGR sing 254 n n C10 C11 MGR doub 255 n y C10 H101 MGR sing 256 n n C11 C12 MGR sing 257 n y C11 N2 MGR sing 258 n n C12 C13 MGR doub 259 n y C12 H121 MGR sing 260 n n C13 H131 MGR sing 261 n n C14 C15 MGR sing 262 n n C14 C19 MGR sing 263 n n C15 C16 MGR doub 264 n n C15 H151 MGR sing 265 n n C16 C17 MGR sing 266 n n C16 H161 MGR sing 267 n n C17 C18 MGR sing 268 n n C17 N3 MGR doub 269 n n C18 C19 MGR doub 270 n n C18 H181 MGR sing 271 n n C19 H191 MGR sing 272 n n C22 N2 MGR sing 273 n n C22 H221 MGR sing 274 n n C22 H222 MGR sing 275 n n C22 H223 MGR sing 276 n n C23 N2 MGR sing 277 n n C23 H231 MGR sing 278 n n C23 H232 MGR sing 279 n n C23 H233 MGR sing 280 n n C24 N3 MGR sing 281 n n C24 H241 MGR sing 282 n n C24 H242 MGR sing 283 n n C24 H243 MGR sing 284 n n C25 N3 MGR sing 285 n n C25 H251 MGR sing 286 n n C25 H252 MGR sing 287 n n C25 H253 MGR sing 288 n n # _atom_sites.entry_id 5VLG _atom_sites.fract_transf_matrix[1][1] 0.009986 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002067 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01163 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009985 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 MGR A 1 300 300 MGR MGR . J 2 MGR B 1 300 300 MGR MGR . K 2 MGR C 1 300 300 MGR MGR . L 2 MGR D 1 300 300 MGR MGR . M 2 MGR E 1 300 300 MGR MGR . N 2 MGR F 1 300 300 MGR MGR . O 2 MGR G 1 300 300 MGR MGR . P 2 MGR H 1 300 300 MGR MGR . Q 3 HOH B 1 401 5 HOH HOH . Q 3 HOH B 2 402 15 HOH HOH . Q 3 HOH B 3 403 6 HOH HOH . R 3 HOH C 1 401 1 HOH HOH . R 3 HOH C 2 402 9 HOH HOH . S 3 HOH D 1 401 7 HOH HOH . S 3 HOH D 2 402 10 HOH HOH . S 3 HOH D 3 403 4 HOH HOH . T 3 HOH E 1 401 17 HOH HOH . T 3 HOH E 2 402 8 HOH HOH . T 3 HOH E 3 403 11 HOH HOH . U 3 HOH F 1 401 3 HOH HOH . U 3 HOH F 2 402 13 HOH HOH . U 3 HOH F 3 403 2 HOH HOH . V 3 HOH G 1 401 12 HOH HOH . W 3 HOH H 1 401 14 HOH HOH . W 3 HOH H 2 402 16 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MGR . . . O 2 0.555 51.268 23.231 1 61.04 ? C1 MGR 300 G 1 HETATM 2 C C2 MGR . . . O 2 1.118 50.423 22.086 1 63.48 ? C2 MGR 300 G 1 HETATM 3 C C3 MGR . . . O 2 2.018 50.973 21.185 1 64.97 ? C3 MGR 300 G 1 HETATM 4 C C4 MGR . . . O 2 2.527 50.203 20.153 1 65.96 ? C4 MGR 300 G 1 HETATM 5 C C5 MGR . . . O 2 2.133 48.882 20.017 1 66.89 ? C5 MGR 300 G 1 HETATM 6 C C6 MGR . . . O 2 1.23 48.331 20.912 1 66.36 ? C6 MGR 300 G 1 HETATM 7 C C7 MGR . . . O 2 0.725 49.1 21.946 1 64.43 ? C7 MGR 300 G 1 HETATM 8 C C8 MGR . . . O 2 -0.804 50.866 23.805 1 59.71 ? C8 MGR 300 G 1 HETATM 9 C C9 MGR . . . O 2 -0.998 50.762 25.171 1 58.58 ? C9 MGR 300 G 1 HETATM 10 C C10 MGR . . . O 2 -2.237 50.39 25.669 1 59.04 ? C10 MGR 300 G 1 HETATM 11 C C11 MGR . . . O 2 -3.282 50.117 24.802 1 63.58 ? C11 MGR 300 G 1 HETATM 12 C C12 MGR . . . O 2 -3.084 50.218 23.437 1 64.24 ? C12 MGR 300 G 1 HETATM 13 C C13 MGR . . . O 2 -1.848 50.592 22.939 1 62.05 ? C13 MGR 300 G 1 HETATM 14 C C14 MGR . . . O 2 1.35 52.108 23.876 1 62.54 ? C14 MGR 300 G 1 HETATM 15 C C15 MGR . . . O 2 0.818 53.436 24.413 1 65.27 ? C15 MGR 300 G 1 HETATM 16 C C16 MGR . . . O 2 1.747 54.4 25.153 1 66.35 ? C16 MGR 300 G 1 HETATM 17 C C17 MGR . . . O 2 3.222 54.052 25.362 1 67.33 ? C17 MGR 300 G 1 HETATM 18 C C18 MGR . . . O 2 3.749 52.72 24.828 1 65.24 ? C18 MGR 300 G 1 HETATM 19 C C19 MGR . . . O 2 2.82 51.759 24.09 1 63.22 ? C19 MGR 300 G 1 HETATM 20 C C22 MGR . . . O 2 -5.754 49.869 24.442 1 68.03 ? C22 MGR 300 G 1 HETATM 21 C C23 MGR . . . O 2 -4.74 49.184 26.643 1 68.73 ? C23 MGR 300 G 1 HETATM 22 C C24 MGR . . . O 2 3.431 55.8 26.917 1 70.74 ? C24 MGR 300 G 1 HETATM 23 C C25 MGR . . . O 2 5.377 55.009 25.567 1 71.94 ? C25 MGR 300 G 1 HETATM 24 N N2 MGR . . . O 2 -4.589 49.724 25.301 1 67.71 ? N2 MGR 300 G 1 HETATM 25 N N3 MGR . . . O 2 3.984 54.842 25.971 1 70.32 ? N3 MGR 300 G 1 HETATM 26 H H31 MGR . . . O 2 2.285 51.859 21.278 1 77.99 ? H31 MGR 300 G 1 HETATM 27 H H41 MGR . . . O 2 3.131 50.572 19.55 1 79.19 ? H41 MGR 300 G 1 HETATM 28 H H51 MGR . . . O 2 2.471 48.365 19.322 1 80.3 ? H51 MGR 300 G 1 HETATM 29 H H61 MGR . . . O 2 0.966 47.443 20.82 1 79.66 ? H61 MGR 300 G 1 HETATM 30 H H71 MGR . . . O 2 0.12 48.729 22.548 1 77.35 ? H71 MGR 300 G 1 HETATM 31 H H91 MGR . . . O 2 -0.298 50.945 25.755 1 70.33 ? H91 MGR 300 G 1 HETATM 32 H H101 MGR . . . O 2 -2.367 50.322 26.587 1 70.88 ? H101 MGR 300 G 1 HETATM 33 H H121 MGR . . . O 2 -3.783 50.037 22.852 1 77.12 ? H121 MGR 300 G 1 HETATM 34 H H131 MGR . . . O 2 -1.718 50.657 22.021 1 74.49 ? H131 MGR 300 G 1 HETATM 35 H H151 MGR . . . O 2 -0.076 53.66 24.288 1 78.36 ? H151 MGR 300 G 1 HETATM 36 H H161 MGR . . . O 2 1.414 55.207 25.474 1 79.65 ? H161 MGR 300 G 1 HETATM 37 H H181 MGR . . . O 2 4.643 52.496 24.95 1 78.33 ? H181 MGR 300 G 1 HETATM 38 H H191 MGR . . . O 2 3.154 50.954 23.766 1 75.9 ? H191 MGR 300 G 1 HETATM 39 H H221 MGR . . . O 2 -5.669 49.276 23.679 1 81.67 ? H221 MGR 300 G 1 HETATM 40 H H222 MGR . . . O 2 -6.554 49.64 24.941 1 81.67 ? H222 MGR 300 G 1 HETATM 41 H H223 MGR . . . O 2 -5.817 50.786 24.134 1 81.67 ? H223 MGR 300 G 1 HETATM 42 H H231 MGR . . . O 2 -5.505 48.588 26.668 1 82.5 ? H231 MGR 300 G 1 HETATM 43 H H232 MGR . . . O 2 -4.875 49.911 27.27 1 82.5 ? H232 MGR 300 G 1 HETATM 44 H H233 MGR . . . O 2 -3.939 48.692 26.885 1 82.5 ? H233 MGR 300 G 1 HETATM 45 H H241 MGR . . . O 2 2.931 55.327 27.601 1 84.92 ? H241 MGR 300 G 1 HETATM 46 H H242 MGR . . . O 2 2.84 56.412 26.45 1 84.92 ? H242 MGR 300 G 1 HETATM 47 H H243 MGR . . . O 2 4.152 56.3 27.331 1 84.92 ? H243 MGR 300 G 1 HETATM 48 H H251 MGR . . . O 2 5.959 54.767 26.305 1 86.36 ? H251 MGR 300 G 1 HETATM 49 H H252 MGR . . . O 2 5.564 54.437 24.807 1 86.36 ? H252 MGR 300 G 1 HETATM 50 H H253 MGR . . . O 2 5.534 55.934 25.322 1 86.36 ? H253 MGR 300 G 1 # _model_server_stats.io_time_ms 33 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 50 #