data_5VLG # _model_server_result.job_id cKZffAys-_3GqnxriEvkgA _model_server_result.datetime_utc '2024-11-25 16:27:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5vlg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":300}' # _entry.id 5VLG # _exptl.entry_id 5VLG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 329.458 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MALACHITE GREEN' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.69 _cell.angle_gamma 90 _cell.entry_id 5VLG _cell.length_a 100.145 _cell.length_b 85.985 _cell.length_c 102.275 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5VLG _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 PISA dimeric 2 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,I,J,Q 1 1 C,D,K,L,R,S 2 1 E,F,M,N,T,U 3 1 G,H,O,P,V,W 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N # _chem_comp.formula 'C23 H25 N2 1' _chem_comp.formula_weight 329.458 _chem_comp.id MGR _chem_comp.mon_nstd_flag . _chem_comp.name 'MALACHITE GREEN' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MGR sing 237 n n C1 C8 MGR sing 238 n n C1 C14 MGR doub 239 n n C2 C3 MGR doub 240 n y C2 C7 MGR sing 241 n y C3 C4 MGR sing 242 n y C3 H31 MGR sing 243 n n C4 C5 MGR doub 244 n y C4 H41 MGR sing 245 n n C5 C6 MGR sing 246 n y C5 H51 MGR sing 247 n n C6 C7 MGR doub 248 n y C6 H61 MGR sing 249 n n C7 H71 MGR sing 250 n n C8 C9 MGR doub 251 n y C8 C13 MGR sing 252 n y C9 C10 MGR sing 253 n y C9 H91 MGR sing 254 n n C10 C11 MGR doub 255 n y C10 H101 MGR sing 256 n n C11 C12 MGR sing 257 n y C11 N2 MGR sing 258 n n C12 C13 MGR doub 259 n y C12 H121 MGR sing 260 n n C13 H131 MGR sing 261 n n C14 C15 MGR sing 262 n n C14 C19 MGR sing 263 n n C15 C16 MGR doub 264 n n C15 H151 MGR sing 265 n n C16 C17 MGR sing 266 n n C16 H161 MGR sing 267 n n C17 C18 MGR sing 268 n n C17 N3 MGR doub 269 n n C18 C19 MGR doub 270 n n C18 H181 MGR sing 271 n n C19 H191 MGR sing 272 n n C22 N2 MGR sing 273 n n C22 H221 MGR sing 274 n n C22 H222 MGR sing 275 n n C22 H223 MGR sing 276 n n C23 N2 MGR sing 277 n n C23 H231 MGR sing 278 n n C23 H232 MGR sing 279 n n C23 H233 MGR sing 280 n n C24 N3 MGR sing 281 n n C24 H241 MGR sing 282 n n C24 H242 MGR sing 283 n n C24 H243 MGR sing 284 n n C25 N3 MGR sing 285 n n C25 H251 MGR sing 286 n n C25 H252 MGR sing 287 n n C25 H253 MGR sing 288 n n # _atom_sites.entry_id 5VLG _atom_sites.fract_transf_matrix[1][1] 0.009986 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002067 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01163 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009985 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 MGR A 1 300 300 MGR MGR . J 2 MGR B 1 300 300 MGR MGR . K 2 MGR C 1 300 300 MGR MGR . L 2 MGR D 1 300 300 MGR MGR . M 2 MGR E 1 300 300 MGR MGR . N 2 MGR F 1 300 300 MGR MGR . O 2 MGR G 1 300 300 MGR MGR . P 2 MGR H 1 300 300 MGR MGR . Q 3 HOH B 1 401 5 HOH HOH . Q 3 HOH B 2 402 15 HOH HOH . Q 3 HOH B 3 403 6 HOH HOH . R 3 HOH C 1 401 1 HOH HOH . R 3 HOH C 2 402 9 HOH HOH . S 3 HOH D 1 401 7 HOH HOH . S 3 HOH D 2 402 10 HOH HOH . S 3 HOH D 3 403 4 HOH HOH . T 3 HOH E 1 401 17 HOH HOH . T 3 HOH E 2 402 8 HOH HOH . T 3 HOH E 3 403 11 HOH HOH . U 3 HOH F 1 401 3 HOH HOH . U 3 HOH F 2 402 13 HOH HOH . U 3 HOH F 3 403 2 HOH HOH . V 3 HOH G 1 401 12 HOH HOH . W 3 HOH H 1 401 14 HOH HOH . W 3 HOH H 2 402 16 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MGR . . . P 2 -7.81 42.498 41.342 1 52.49 ? C1 MGR 300 H 1 HETATM 2 C C2 MGR . . . P 2 -7.177 42.605 42.733 1 52.74 ? C2 MGR 300 H 1 HETATM 3 C C3 MGR . . . P 2 -7.58 41.753 43.752 1 52.24 ? C3 MGR 300 H 1 HETATM 4 C C4 MGR . . . P 2 -7.005 41.847 45.009 1 52.8 ? C4 MGR 300 H 1 HETATM 5 C C5 MGR . . . P 2 -6.027 42.796 45.254 1 54.38 ? C5 MGR 300 H 1 HETATM 6 C C6 MGR . . . P 2 -5.625 43.652 44.242 1 54.99 ? C6 MGR 300 H 1 HETATM 7 C C7 MGR . . . P 2 -6.198 43.556 42.984 1 54.21 ? C7 MGR 300 H 1 HETATM 8 C C8 MGR . . . P 2 -7.96 43.767 40.499 1 52.42 ? C8 MGR 300 H 1 HETATM 9 C C9 MGR . . . P 2 -7.741 43.735 39.134 1 53.15 ? C9 MGR 300 H 1 HETATM 10 C C10 MGR . . . P 2 -7.877 44.892 38.381 1 55.13 ? C10 MGR 300 H 1 HETATM 11 C C11 MGR . . . P 2 -8.228 46.085 38.992 1 57.07 ? C11 MGR 300 H 1 HETATM 12 C C12 MGR . . . P 2 -8.445 46.118 40.358 1 55.45 ? C12 MGR 300 H 1 HETATM 13 C C13 MGR . . . P 2 -8.311 44.962 41.109 1 54.04 ? C13 MGR 300 H 1 HETATM 14 C C14 MGR . . . P 2 -8.012 41.301 40.813 1 54.76 ? C14 MGR 300 H 1 HETATM 15 C C15 MGR . . . P 2 -9.239 41.019 39.946 1 56.48 ? C15 MGR 300 H 1 HETATM 16 C C16 MGR . . . P 2 -9.459 39.628 39.35 1 58.19 ? C16 MGR 300 H 1 HETATM 17 C C17 MGR . . . P 2 -8.462 38.5 39.616 1 60.23 ? C17 MGR 300 H 1 HETATM 18 C C18 MGR . . . P 2 -7.235 38.784 40.48 1 59.45 ? C18 MGR 300 H 1 HETATM 19 C C19 MGR . . . P 2 -7.016 40.174 41.075 1 57.41 ? C19 MGR 300 H 1 HETATM 20 C C22 MGR . . . P 2 -9.324 48.315 38.622 1 59.77 ? C22 MGR 300 H 1 HETATM 21 C C23 MGR . . . P 2 -7.574 47.504 37.012 1 61.24 ? C23 MGR 300 H 1 HETATM 22 C C24 MGR . . . P 2 -9.357 37.216 37.864 1 63.71 ? C24 MGR 300 H 1 HETATM 23 C C25 MGR . . . P 2 -8.376 36.156 39.902 1 62.61 ? C25 MGR 300 H 1 HETATM 24 N N2 MGR . . . P 2 -8.373 47.299 38.207 1 59.52 ? N2 MGR 300 H 1 HETATM 25 N N3 MGR . . . P 2 -8.644 37.36 39.124 1 62.53 ? N3 MGR 300 H 1 HETATM 26 H H31 MGR . . . P 2 -8.235 41.113 43.589 1 62.73 ? H31 MGR 300 H 1 HETATM 27 H H41 MGR . . . P 2 -7.277 41.274 45.689 1 63.39 ? H41 MGR 300 H 1 HETATM 28 H H51 MGR . . . P 2 -5.644 42.862 46.099 1 65.28 ? H51 MGR 300 H 1 HETATM 29 H H61 MGR . . . P 2 -4.968 44.29 44.406 1 66.02 ? H61 MGR 300 H 1 HETATM 30 H H71 MGR . . . P 2 -5.925 44.13 42.306 1 65.09 ? H71 MGR 300 H 1 HETATM 31 H H91 MGR . . . P 2 -7.505 42.936 38.72 1 63.81 ? H91 MGR 300 H 1 HETATM 32 H H101 MGR . . . P 2 -7.731 44.867 37.462 1 66.19 ? H101 MGR 300 H 1 HETATM 33 H H121 MGR . . . P 2 -8.682 46.917 40.771 1 66.58 ? H121 MGR 300 H 1 HETATM 34 H H131 MGR . . . P 2 -8.456 44.988 42.027 1 64.88 ? H131 MGR 300 H 1 HETATM 35 H H151 MGR . . . P 2 -9.854 41.696 39.781 1 67.81 ? H151 MGR 300 H 1 HETATM 36 H H161 MGR . . . P 2 -10.209 39.465 38.824 1 69.86 ? H161 MGR 300 H 1 HETATM 37 H H181 MGR . . . P 2 -6.62 38.107 40.648 1 71.37 ? H181 MGR 300 H 1 HETATM 38 H H191 MGR . . . P 2 -6.268 40.335 41.603 1 68.93 ? H191 MGR 300 H 1 HETATM 39 H H221 MGR . . . P 2 -9.356 49.019 37.956 1 71.75 ? H221 MGR 300 H 1 HETATM 40 H H222 MGR . . . P 2 -9.048 48.688 39.474 1 71.75 ? H222 MGR 300 H 1 HETATM 41 H H223 MGR . . . P 2 -10.203 47.916 38.713 1 71.75 ? H223 MGR 300 H 1 HETATM 42 H H231 MGR . . . P 2 -6.754 46.99 37.079 1 73.53 ? H231 MGR 300 H 1 HETATM 43 H H232 MGR . . . P 2 -7.358 48.446 36.924 1 73.53 ? H232 MGR 300 H 1 HETATM 44 H H233 MGR . . . P 2 -8.075 47.213 36.234 1 73.53 ? H233 MGR 300 H 1 HETATM 45 H H241 MGR . . . P 2 -9.37 36.282 37.605 1 76.49 ? H241 MGR 300 H 1 HETATM 46 H H242 MGR . . . P 2 -10.267 37.535 37.97 1 76.49 ? H242 MGR 300 H 1 HETATM 47 H H243 MGR . . . P 2 -8.91 37.736 37.178 1 76.49 ? H243 MGR 300 H 1 HETATM 48 H H251 MGR . . . P 2 -7.697 35.627 39.455 1 75.16 ? H251 MGR 300 H 1 HETATM 49 H H252 MGR . . . P 2 -9.19 35.636 39.984 1 75.16 ? H252 MGR 300 H 1 HETATM 50 H H253 MGR . . . P 2 -8.061 36.406 40.785 1 75.16 ? H253 MGR 300 H 1 # _model_server_stats.io_time_ms 34 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 50 #