data_5VLL
#
_model_server_result.job_id            P55W6byzFz8vbcRrq7BX3Q 
_model_server_result.datetime_utc      '2024-11-22 09:08:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5vll 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":501}' 
#
_entry.id    5VLL 
#
_exptl.entry_id    5VLL 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              40.078 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CALCIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5VLL 
_cell.length_a            70.566 
_cell.length_b            70.566 
_cell.length_c            158.487 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5VLL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 223 A CYS 223 1_555 A SG CYS 255 A CYS 255 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf2 A SG CYS 323 A CYS 323 1_555 A SG CYS 358 A CYS 358 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
disulf ? disulf3 A SG CYS 375 A CYS 375 1_555 A SG CYS 378 A CYS 378 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
disulf ? disulf4 B SG CYS 1 Y CYS 1 1_555 B SG CYS 14 Y CYS 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
covale ? covale1 C C ACE 1 Z ACE 0 1_555 C N THR 2 Z THR 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? 
covale ? covale2 C C VAL 14 Z VAL 13 1_555 C N NH2 15 Z NH2 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? 
metalc ? metalc1 A O PRO 331 A PRO 331 1_555 D CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? 
metalc ? metalc2 A O VAL 333 A VAL 333 1_555 D CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? 
metalc ? metalc3 A OD1 ASP 360 A ASP 360 1_555 D CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.66 ? 
metalc ? metalc4 A OD2 ASP 360 A ASP 360 1_555 D CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.547 ? 
metalc ? metalc5 D CA CA . A CA 501 1_555 E O HOH . A HOH 638 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? 
metalc ? metalc6 D CA CA . A CA 501 1_555 E O HOH . A HOH 672 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.042 ? 
#
_chem_comp.formula           'Ca 2' 
_chem_comp.formula_weight    40.078 
_chem_comp.id                CA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CALCIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5VLL 
_atom_sites.fract_transf_matrix[1][1]    0.014171 
_atom_sites.fract_transf_matrix[1][2]    0.008182 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016363 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00631 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 CA A 1 501 1 CA CA . 
E 5 HOH A 1 601 22 HOH HOH . 
E 5 HOH A 2 602 59 HOH HOH . 
E 5 HOH A 3 603 10 HOH HOH . 
E 5 HOH A 4 604 1 HOH HOH . 
E 5 HOH A 5 605 60 HOH HOH . 
E 5 HOH A 6 606 82 HOH HOH . 
E 5 HOH A 7 607 29 HOH HOH . 
E 5 HOH A 8 608 97 HOH HOH . 
E 5 HOH A 9 609 28 HOH HOH . 
E 5 HOH A 10 610 41 HOH HOH . 
E 5 HOH A 11 611 6 HOH HOH . 
E 5 HOH A 12 612 57 HOH HOH . 
E 5 HOH A 13 613 4 HOH HOH . 
E 5 HOH A 14 614 77 HOH HOH . 
E 5 HOH A 15 615 8 HOH HOH . 
E 5 HOH A 16 616 37 HOH HOH . 
E 5 HOH A 17 617 25 HOH HOH . 
E 5 HOH A 18 618 12 HOH HOH . 
E 5 HOH A 19 619 26 HOH HOH . 
E 5 HOH A 20 620 42 HOH HOH . 
E 5 HOH A 21 621 23 HOH HOH . 
E 5 HOH A 22 622 31 HOH HOH . 
E 5 HOH A 23 623 62 HOH HOH . 
E 5 HOH A 24 624 15 HOH HOH . 
E 5 HOH A 25 625 84 HOH HOH . 
E 5 HOH A 26 626 56 HOH HOH . 
E 5 HOH A 27 627 27 HOH HOH . 
E 5 HOH A 28 628 52 HOH HOH . 
E 5 HOH A 29 629 16 HOH HOH . 
E 5 HOH A 30 630 3 HOH HOH . 
E 5 HOH A 31 631 2 HOH HOH . 
E 5 HOH A 32 632 38 HOH HOH . 
E 5 HOH A 33 633 40 HOH HOH . 
E 5 HOH A 34 634 7 HOH HOH . 
E 5 HOH A 35 635 46 HOH HOH . 
E 5 HOH A 36 636 36 HOH HOH . 
E 5 HOH A 37 637 20 HOH HOH . 
E 5 HOH A 38 638 55 HOH HOH . 
E 5 HOH A 39 639 13 HOH HOH . 
E 5 HOH A 40 640 47 HOH HOH . 
E 5 HOH A 41 641 32 HOH HOH . 
E 5 HOH A 42 642 9 HOH HOH . 
E 5 HOH A 43 643 66 HOH HOH . 
E 5 HOH A 44 644 33 HOH HOH . 
E 5 HOH A 45 645 39 HOH HOH . 
E 5 HOH A 46 646 99 HOH HOH . 
E 5 HOH A 47 647 79 HOH HOH . 
E 5 HOH A 48 648 17 HOH HOH . 
E 5 HOH A 49 649 45 HOH HOH . 
E 5 HOH A 50 650 19 HOH HOH . 
E 5 HOH A 51 651 89 HOH HOH . 
E 5 HOH A 52 652 76 HOH HOH . 
E 5 HOH A 53 653 70 HOH HOH . 
E 5 HOH A 54 654 54 HOH HOH . 
E 5 HOH A 55 655 85 HOH HOH . 
E 5 HOH A 56 656 69 HOH HOH . 
E 5 HOH A 57 657 48 HOH HOH . 
E 5 HOH A 58 658 90 HOH HOH . 
E 5 HOH A 59 659 65 HOH HOH . 
E 5 HOH A 60 660 91 HOH HOH . 
E 5 HOH A 61 661 96 HOH HOH . 
E 5 HOH A 62 662 83 HOH HOH . 
E 5 HOH A 63 663 34 HOH HOH . 
E 5 HOH A 64 664 72 HOH HOH . 
E 5 HOH A 65 665 35 HOH HOH . 
E 5 HOH A 66 666 78 HOH HOH . 
E 5 HOH A 67 667 95 HOH HOH . 
E 5 HOH A 68 668 100 HOH HOH . 
E 5 HOH A 69 669 86 HOH HOH . 
E 5 HOH A 70 670 24 HOH HOH . 
E 5 HOH A 71 671 43 HOH HOH . 
E 5 HOH A 72 672 5 HOH HOH . 
E 5 HOH A 73 673 74 HOH HOH . 
E 5 HOH A 74 674 98 HOH HOH . 
E 5 HOH A 75 675 87 HOH HOH . 
E 5 HOH A 76 676 21 HOH HOH . 
E 5 HOH A 77 677 67 HOH HOH . 
E 5 HOH A 78 678 68 HOH HOH . 
E 5 HOH A 79 679 93 HOH HOH . 
E 5 HOH A 80 680 101 HOH HOH . 
E 5 HOH A 81 681 92 HOH HOH . 
E 5 HOH A 82 682 44 HOH HOH . 
E 5 HOH A 83 683 18 HOH HOH . 
F 5 HOH Y 1 101 81 HOH HOH . 
F 5 HOH Y 2 102 58 HOH HOH . 
G 5 HOH Z 1 101 14 HOH HOH . 
G 5 HOH Z 2 102 75 HOH HOH . 
G 5 HOH Z 3 103 71 HOH HOH . 
G 5 HOH Z 4 104 53 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CA 
_atom_site.label_atom_id         CA 
_atom_site.label_comp_id         CA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               12.784 
_atom_site.Cartn_y               -13.104 
_atom_site.Cartn_z               0.138 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        55.71 
_atom_site.pdbx_formal_charge    2 
_atom_site.auth_atom_id          CA 
_atom_site.auth_comp_id          CA 
_atom_site.auth_seq_id           501 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           290 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           1 
#