data_5VLM
#
_model_server_result.job_id            t15U9sUHZK6R7Ogtb4_cnQ 
_model_server_result.datetime_utc      '2024-11-29 04:19:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5vlm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":301}' 
#
_entry.id    5VLM 
#
_exptl.entry_id    5VLM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              372.526 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CRYSTAL VIOLET' 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          97.1 
_cell.angle_gamma         90 
_cell.entry_id            5VLM 
_cell.length_a            97.397 
_cell.length_b            79.229 
_cell.length_c            105.579 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5VLM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
PISA dimeric 2 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,I,J 1 1 
C,D,K,L 2 1 
E,F,M,N 3 1 
G,H,O,P 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
? 2 M N N 
? 2 N N N 
? 2 O N N 
? 2 P N N 
#
_chem_comp.formula           'C25 H30 N3 1' 
_chem_comp.formula_weight    372.526 
_chem_comp.id                CVI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CRYSTAL VIOLET' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 CVI doub 70 n n 
C1 C8 CVI sing 71 n n 
C1 C14 CVI sing 72 n n 
C2 C3 CVI sing 73 n n 
C2 C7 CVI sing 74 n n 
C3 C4 CVI doub 75 n n 
C3 H31 CVI sing 76 n n 
C4 C5 CVI sing 77 n n 
C4 H41 CVI sing 78 n n 
C5 C6 CVI sing 79 n n 
C5 N1 CVI doub 80 n n 
C6 C7 CVI doub 81 n n 
C6 H61 CVI sing 82 n n 
C7 H71 CVI sing 83 n n 
C8 C9 CVI doub 84 n y 
C8 C13 CVI sing 85 n y 
C9 C10 CVI sing 86 n y 
C9 H91 CVI sing 87 n n 
C10 C11 CVI doub 88 n y 
C10 H101 CVI sing 89 n n 
C11 C12 CVI sing 90 n y 
C11 N2 CVI sing 91 n n 
C12 C13 CVI doub 92 n y 
C12 H121 CVI sing 93 n n 
C13 H131 CVI sing 94 n n 
C14 C15 CVI doub 95 n y 
C14 C19 CVI sing 96 n y 
C15 C16 CVI sing 97 n y 
C15 H151 CVI sing 98 n n 
C16 C17 CVI doub 99 n y 
C16 H161 CVI sing 100 n n 
C17 C18 CVI sing 101 n y 
C17 N3 CVI sing 102 n n 
C18 C19 CVI doub 103 n y 
C18 H181 CVI sing 104 n n 
C19 H191 CVI sing 105 n n 
C20 N1 CVI sing 106 n n 
C20 H201 CVI sing 107 n n 
C20 H202 CVI sing 108 n n 
C20 H203 CVI sing 109 n n 
C21 N1 CVI sing 110 n n 
C21 H211 CVI sing 111 n n 
C21 H212 CVI sing 112 n n 
C21 H213 CVI sing 113 n n 
C22 N2 CVI sing 114 n n 
C22 H221 CVI sing 115 n n 
C22 H222 CVI sing 116 n n 
C22 H223 CVI sing 117 n n 
C23 N2 CVI sing 118 n n 
C23 H231 CVI sing 119 n n 
C23 H232 CVI sing 120 n n 
C23 H233 CVI sing 121 n n 
C24 N3 CVI sing 122 n n 
C24 H241 CVI sing 123 n n 
C24 H242 CVI sing 124 n n 
C24 H243 CVI sing 125 n n 
C25 N3 CVI sing 126 n n 
C25 H251 CVI sing 127 n n 
C25 H252 CVI sing 128 n n 
C25 H253 CVI sing 129 n n 
#
_atom_sites.entry_id                     5VLM 
_atom_sites.fract_transf_matrix[1][1]    0.010267 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00128 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012622 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009545 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 2 CVI A 1 301 301 CVI CVI . 
J 2 CVI B 1 301 301 CVI CVI . 
K 2 CVI C 1 301 301 CVI CVI . 
L 2 CVI D 1 301 301 CVI CVI . 
M 2 CVI E 1 301 301 CVI CVI . 
N 2 CVI F 1 301 301 CVI CVI . 
O 2 CVI G 1 301 301 CVI CVI . 
P 2 CVI H 1 301 301 CVI CVI . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 CVI . . . J 2 -38.828 16.606 -30.021 1 49.93 ? C1 CVI 301 B 1 
HETATM 2 C C2 CVI . . . J 2 -39.27 15.224 -29.996 1 54.83 ? C2 CVI 301 B 1 
HETATM 3 C C3 CVI . . . J 2 -40.452 14.79 -30.635 1 56.67 ? C3 CVI 301 B 1 
HETATM 4 C C4 CVI . . . J 2 -40.864 13.465 -30.608 1 60.49 ? C4 CVI 301 B 1 
HETATM 5 C C5 CVI . . . J 2 -40.12 12.466 -29.924 1 66.45 ? C5 CVI 301 B 1 
HETATM 6 C C6 CVI . . . J 2 -38.933 12.904 -29.276 1 63.38 ? C6 CVI 301 B 1 
HETATM 7 C C7 CVI . . . J 2 -38.53 14.231 -29.317 1 59.9 ? C7 CVI 301 B 1 
HETATM 8 C C8 CVI . . . J 2 -37.876 17.076 -29.038 1 48.67 ? C8 CVI 301 B 1 
HETATM 9 C C9 CVI . . . J 2 -36.741 17.835 -29.414 1 48.19 ? C9 CVI 301 B 1 
HETATM 10 C C10 CVI . . . J 2 -35.825 18.298 -28.477 1 47.83 ? C10 CVI 301 B 1 
HETATM 11 C C11 CVI . . . J 2 -35.976 18.028 -27.083 1 47.57 ? C11 CVI 301 B 1 
HETATM 12 C C12 CVI . . . J 2 -37.12 17.264 -26.718 1 47.28 ? C12 CVI 301 B 1 
HETATM 13 C C13 CVI . . . J 2 -38.036 16.81 -27.661 1 47.84 ? C13 CVI 301 B 1 
HETATM 14 C C14 CVI . . . J 2 -39.129 17.482 -31.134 1 47.3 ? C14 CVI 301 B 1 
HETATM 15 C C15 CVI . . . J 2 -39.373 17.005 -32.443 1 46.51 ? C15 CVI 301 B 1 
HETATM 16 C C16 CVI . . . J 2 -39.658 17.869 -33.495 1 45.8 ? C16 CVI 301 B 1 
HETATM 17 C C17 CVI . . . J 2 -39.702 19.283 -33.314 1 45.68 ? C17 CVI 301 B 1 
HETATM 18 C C18 CVI . . . J 2 -39.447 19.753 -31.997 1 46.49 ? C18 CVI 301 B 1 
HETATM 19 C C19 CVI . . . J 2 -39.173 18.882 -30.949 1 46.42 ? C19 CVI 301 B 1 
HETATM 20 C C20 CVI . . . J 2 -41.764 10.759 -30.587 1 82.43 ? C20 CVI 301 B 1 
HETATM 21 C C21 CVI . . . J 2 -39.827 10.072 -29.217 1 73.72 ? C21 CVI 301 B 1 
HETATM 22 C C22 CVI . . . J 2 -33.859 19.284 -26.484 1 45.6 ? C22 CVI 301 B 1 
HETATM 23 C C23 CVI . . . J 2 -35.182 18.229 -24.711 1 46.52 ? C23 CVI 301 B 1 
HETATM 24 C C24 CVI . . . J 2 -40.246 19.67 -35.745 1 44.45 ? C24 CVI 301 B 1 
HETATM 25 C C25 CVI . . . J 2 -40.037 21.592 -34.236 1 44.92 ? C25 CVI 301 B 1 
HETATM 26 N N1 CVI . . . J 2 -40.551 11.12 -29.9 1 73.93 ? N1 CVI 301 B 1 
HETATM 27 N N2 CVI . . . J 2 -35.028 18.504 -26.123 1 46.59 ? N2 CVI 301 B 1 
HETATM 28 N N3 CVI . . . J 2 -39.989 20.156 -34.405 1 45.06 ? N3 CVI 301 B 1 
HETATM 29 H H31 CVI . . . J 2 -40.965 15.413 -31.097 1 68.01 ? H31 CVI 301 B 1 
HETATM 30 H H41 CVI . . . J 2 -41.651 13.243 -31.053 1 72.59 ? H41 CVI 301 B 1 
HETATM 31 H H61 CVI . . . J 2 -38.401 12.298 -28.812 1 76.05 ? H61 CVI 301 B 1 
HETATM 32 H H71 CVI . . . J 2 -37.748 14.478 -28.878 1 71.87 ? H71 CVI 301 B 1 
HETATM 33 H H91 CVI . . . J 2 -36.61 18.032 -30.313 1 57.83 ? H91 CVI 301 B 1 
HETATM 34 H H101 CVI . . . J 2 -35.095 18.791 -28.775 1 57.4 ? H101 CVI 301 B 1 
HETATM 35 H H121 CVI . . . J 2 -37.274 17.057 -25.825 1 56.73 ? H121 CVI 301 B 1 
HETATM 36 H H131 CVI . . . J 2 -38.77 16.312 -27.379 1 57.41 ? H131 CVI 301 B 1 
HETATM 37 H H151 CVI . . . J 2 -39.354 16.088 -32.6 1 55.81 ? H151 CVI 301 B 1 
HETATM 38 H H161 CVI . . . J 2 -39.813 17.507 -34.337 1 54.97 ? H161 CVI 301 B 1 
HETATM 39 H H181 CVI . . . J 2 -39.465 20.665 -31.816 1 55.78 ? H181 CVI 301 B 1 
HETATM 40 H H191 CVI . . . J 2 -39.01 19.23 -30.102 1 55.71 ? H191 CVI 301 B 1 
HETATM 41 H H201 CVI . . . J 2 -41.682 10.966 -31.532 1 98.92 ? H201 CVI 301 B 1 
HETATM 42 H H202 CVI . . . J 2 -42.543 11.219 -30.237 1 98.92 ? H202 CVI 301 B 1 
HETATM 43 H H203 CVI . . . J 2 -41.902 9.803 -30.499 1 98.92 ? H203 CVI 301 B 1 
HETATM 44 H H211 CVI . . . J 2 -40.402 9.685 -28.539 1 88.47 ? H211 CVI 301 B 1 
HETATM 45 H H212 CVI . . . J 2 -39.018 10.395 -28.79 1 88.47 ? H212 CVI 301 B 1 
HETATM 46 H H213 CVI . . . J 2 -39.588 9.372 -29.845 1 88.47 ? H213 CVI 301 B 1 
HETATM 47 H H221 CVI . . . J 2 -33.852 20.158 -26.062 1 54.72 ? H221 CVI 301 B 1 
HETATM 48 H H222 CVI . . . J 2 -33.861 19.407 -27.446 1 54.72 ? H222 CVI 301 B 1 
HETATM 49 H H223 CVI . . . J 2 -33.049 18.814 -26.232 1 54.72 ? H223 CVI 301 B 1 
HETATM 50 H H231 CVI . . . J 2 -35.973 17.707 -24.507 1 55.82 ? H231 CVI 301 B 1 
HETATM 51 H H232 CVI . . . J 2 -34.4 17.754 -24.39 1 55.82 ? H232 CVI 301 B 1 
HETATM 52 H H233 CVI . . . J 2 -35.246 19.076 -24.242 1 55.82 ? H233 CVI 301 B 1 
HETATM 53 H H241 CVI . . . J 2 -40.2 18.703 -35.804 1 53.33 ? H241 CVI 301 B 1 
HETATM 54 H H242 CVI . . . J 2 -41.138 19.952 -36.004 1 53.33 ? H242 CVI 301 B 1 
HETATM 55 H H243 CVI . . . J 2 -39.607 20.048 -36.369 1 53.33 ? H243 CVI 301 B 1 
HETATM 56 H H251 CVI . . . J 2 -40.925 21.897 -34.48 1 53.91 ? H251 CVI 301 B 1 
HETATM 57 H H252 CVI . . . J 2 -39.855 21.876 -33.327 1 53.91 ? H252 CVI 301 B 1 
HETATM 58 H H253 CVI . . . J 2 -39.392 22.007 -34.83 1 53.91 ? H253 CVI 301 B 1 
#
_model_server_stats.io_time_ms              122 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    39 
_model_server_stats.query_time_ms           270 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           58 
#