data_5VLM
#
_model_server_result.job_id            oPih8xHB7vZItyCQ-zRrVg 
_model_server_result.datetime_utc      '2024-10-15 10:24:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5vlm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":301}' 
#
_entry.id    5VLM 
#
_exptl.entry_id    5VLM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              372.526 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CRYSTAL VIOLET' 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          97.1 
_cell.angle_gamma         90 
_cell.entry_id            5VLM 
_cell.length_a            97.397 
_cell.length_b            79.229 
_cell.length_c            105.579 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5VLM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
PISA dimeric 2 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,I,J 1 1 
C,D,K,L 2 1 
E,F,M,N 3 1 
G,H,O,P 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
? 2 M N N 
? 2 N N N 
? 2 O N N 
? 2 P N N 
#
_chem_comp.formula           'C25 H30 N3 1' 
_chem_comp.formula_weight    372.526 
_chem_comp.id                CVI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CRYSTAL VIOLET' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 CVI doub 70 n n 
C1 C8 CVI sing 71 n n 
C1 C14 CVI sing 72 n n 
C2 C3 CVI sing 73 n n 
C2 C7 CVI sing 74 n n 
C3 C4 CVI doub 75 n n 
C3 H31 CVI sing 76 n n 
C4 C5 CVI sing 77 n n 
C4 H41 CVI sing 78 n n 
C5 C6 CVI sing 79 n n 
C5 N1 CVI doub 80 n n 
C6 C7 CVI doub 81 n n 
C6 H61 CVI sing 82 n n 
C7 H71 CVI sing 83 n n 
C8 C9 CVI doub 84 n y 
C8 C13 CVI sing 85 n y 
C9 C10 CVI sing 86 n y 
C9 H91 CVI sing 87 n n 
C10 C11 CVI doub 88 n y 
C10 H101 CVI sing 89 n n 
C11 C12 CVI sing 90 n y 
C11 N2 CVI sing 91 n n 
C12 C13 CVI doub 92 n y 
C12 H121 CVI sing 93 n n 
C13 H131 CVI sing 94 n n 
C14 C15 CVI doub 95 n y 
C14 C19 CVI sing 96 n y 
C15 C16 CVI sing 97 n y 
C15 H151 CVI sing 98 n n 
C16 C17 CVI doub 99 n y 
C16 H161 CVI sing 100 n n 
C17 C18 CVI sing 101 n y 
C17 N3 CVI sing 102 n n 
C18 C19 CVI doub 103 n y 
C18 H181 CVI sing 104 n n 
C19 H191 CVI sing 105 n n 
C20 N1 CVI sing 106 n n 
C20 H201 CVI sing 107 n n 
C20 H202 CVI sing 108 n n 
C20 H203 CVI sing 109 n n 
C21 N1 CVI sing 110 n n 
C21 H211 CVI sing 111 n n 
C21 H212 CVI sing 112 n n 
C21 H213 CVI sing 113 n n 
C22 N2 CVI sing 114 n n 
C22 H221 CVI sing 115 n n 
C22 H222 CVI sing 116 n n 
C22 H223 CVI sing 117 n n 
C23 N2 CVI sing 118 n n 
C23 H231 CVI sing 119 n n 
C23 H232 CVI sing 120 n n 
C23 H233 CVI sing 121 n n 
C24 N3 CVI sing 122 n n 
C24 H241 CVI sing 123 n n 
C24 H242 CVI sing 124 n n 
C24 H243 CVI sing 125 n n 
C25 N3 CVI sing 126 n n 
C25 H251 CVI sing 127 n n 
C25 H252 CVI sing 128 n n 
C25 H253 CVI sing 129 n n 
#
_atom_sites.entry_id                     5VLM 
_atom_sites.fract_transf_matrix[1][1]    0.010267 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00128 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012622 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009545 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 2 CVI A 1 301 301 CVI CVI . 
J 2 CVI B 1 301 301 CVI CVI . 
K 2 CVI C 1 301 301 CVI CVI . 
L 2 CVI D 1 301 301 CVI CVI . 
M 2 CVI E 1 301 301 CVI CVI . 
N 2 CVI F 1 301 301 CVI CVI . 
O 2 CVI G 1 301 301 CVI CVI . 
P 2 CVI H 1 301 301 CVI CVI . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 CVI . . . K 2 -1.178 40.998 -5.101 1 52.53 ? C1 CVI 301 C 1 
HETATM 2 C C2 CVI . . . K 2 -0.797 42.328 -5.525 1 54.5 ? C2 CVI 301 C 1 
HETATM 3 C C3 CVI . . . K 2 -1.675 43.43 -5.42 1 55.06 ? C3 CVI 301 C 1 
HETATM 4 C C4 CVI . . . K 2 -1.302 44.705 -5.827 1 55.43 ? C4 CVI 301 C 1 
HETATM 5 C C5 CVI . . . K 2 -0.016 44.966 -6.379 1 54.85 ? C5 CVI 301 C 1 
HETATM 6 C C6 CVI . . . K 2 0.863 43.851 -6.485 1 55.01 ? C6 CVI 301 C 1 
HETATM 7 C C7 CVI . . . K 2 0.481 42.581 -6.07 1 54.75 ? C7 CVI 301 C 1 
HETATM 8 C C8 CVI . . . K 2 -0.621 39.844 -5.763 1 48.26 ? C8 CVI 301 C 1 
HETATM 9 C C9 CVI . . . K 2 -0.184 38.716 -5.034 1 46.14 ? C9 CVI 301 C 1 
HETATM 10 C C10 CVI . . . K 2 0.347 37.601 -5.672 1 46.11 ? C10 CVI 301 C 1 
HETATM 11 C C11 CVI . . . K 2 0.481 37.538 -7.091 1 45.6 ? C11 CVI 301 C 1 
HETATM 12 C C12 CVI . . . K 2 0.038 38.681 -7.81 1 45.91 ? C12 CVI 301 C 1 
HETATM 13 C C13 CVI . . . K 2 -0.497 39.792 -7.167 1 47.18 ? C13 CVI 301 C 1 
HETATM 14 C C14 CVI . . . K 2 -2.092 40.799 -4.001 1 53.79 ? C14 CVI 301 C 1 
HETATM 15 C C15 CVI . . . K 2 -2.136 41.683 -2.899 1 54.84 ? C15 CVI 301 C 1 
HETATM 16 C C16 CVI . . . K 2 -3.017 41.485 -1.844 1 55.84 ? C16 CVI 301 C 1 
HETATM 17 C C17 CVI . . . K 2 -3.917 40.378 -1.813 1 57.08 ? C17 CVI 301 C 1 
HETATM 18 C C18 CVI . . . K 2 -3.859 39.492 -2.925 1 55.1 ? C18 CVI 301 C 1 
HETATM 19 C C19 CVI . . . K 2 -2.978 39.698 -3.981 1 54.21 ? C19 CVI 301 C 1 
HETATM 20 C C20 CVI . . . K 2 -0.612 47.342 -6.641 1 56.28 ? C20 CVI 301 C 1 
HETATM 21 C C21 CVI . . . K 2 1.628 46.603 -7.356 1 56.79 ? C21 CVI 301 C 1 
HETATM 22 C C22 CVI . . . K 2 1.483 35.219 -7.006 1 45.43 ? C22 CVI 301 C 1 
HETATM 23 C C23 CVI . . . K 2 1.167 36.321 -9.174 1 43.89 ? C23 CVI 301 C 1 
HETATM 24 C C24 CVI . . . K 2 -4.851 41.112 0.411 1 61.34 ? C24 CVI 301 C 1 
HETATM 25 C C25 CVI . . . K 2 -5.738 39.087 -0.642 1 60.33 ? C25 CVI 301 C 1 
HETATM 26 N N1 CVI . . . K 2 0.34 46.272 -6.789 1 56.26 ? N1 CVI 301 C 1 
HETATM 27 N N2 CVI . . . K 2 1.03 36.388 -7.736 1 44.8 ? N2 CVI 301 C 1 
HETATM 28 N N3 CVI . . . K 2 -4.81 40.197 -0.713 1 59.52 ? N3 CVI 301 C 1 
HETATM 29 H H31 CVI . . . K 2 -2.523 43.299 -5.062 1 66.07 ? H31 CVI 301 C 1 
HETATM 30 H H41 CVI . . . K 2 -1.921 45.392 -5.732 1 66.52 ? H41 CVI 301 C 1 
HETATM 31 H H61 CVI . . . K 2 1.717 43.958 -6.837 1 66.01 ? H61 CVI 301 C 1 
HETATM 32 H H71 CVI . . . K 2 1.082 41.876 -6.157 1 65.7 ? H71 CVI 301 C 1 
HETATM 33 H H91 CVI . . . K 2 -0.257 38.72 -4.107 1 55.37 ? H91 CVI 301 C 1 
HETATM 34 H H101 CVI . . . K 2 0.622 36.881 -5.151 1 55.34 ? H101 CVI 301 C 1 
HETATM 35 H H121 CVI . . . K 2 0.098 38.7 -8.738 1 55.09 ? H121 CVI 301 C 1 
HETATM 36 H H131 CVI . . . K 2 -0.775 40.521 -7.673 1 56.61 ? H131 CVI 301 C 1 
HETATM 37 H H151 CVI . . . K 2 -1.565 42.418 -2.886 1 65.81 ? H151 CVI 301 C 1 
HETATM 38 H H161 CVI . . . K 2 -3.012 42.094 -1.141 1 67 ? H161 CVI 301 C 1 
HETATM 39 H H181 CVI . . . K 2 -4.421 38.753 -2.962 1 66.12 ? H181 CVI 301 C 1 
HETATM 40 H H191 CVI . . . K 2 -2.968 39.098 -4.691 1 65.05 ? H191 CVI 301 C 1 
HETATM 41 H H201 CVI . . . K 2 -1.413 47.145 -7.152 1 67.54 ? H201 CVI 301 C 1 
HETATM 42 H H202 CVI . . . K 2 -0.261 48.198 -6.935 1 67.54 ? H202 CVI 301 C 1 
HETATM 43 H H203 CVI . . . K 2 -0.861 47.414 -5.706 1 67.54 ? H203 CVI 301 C 1 
HETATM 44 H H211 CVI . . . K 2 2.168 45.799 -7.396 1 68.15 ? H211 CVI 301 C 1 
HETATM 45 H H212 CVI . . . K 2 1.558 46.975 -8.249 1 68.15 ? H212 CVI 301 C 1 
HETATM 46 H H213 CVI . . . K 2 2.084 47.244 -6.788 1 68.15 ? H213 CVI 301 C 1 
HETATM 47 H H221 CVI . . . K 2 1.004 34.415 -7.26 1 54.51 ? H221 CVI 301 C 1 
HETATM 48 H H222 CVI . . . K 2 2.425 35.088 -7.197 1 54.51 ? H222 CVI 301 C 1 
HETATM 49 H H223 CVI . . . K 2 1.375 35.354 -6.052 1 54.51 ? H223 CVI 301 C 1 
HETATM 50 H H231 CVI . . . K 2 0.853 37.12 -9.626 1 52.67 ? H231 CVI 301 C 1 
HETATM 51 H H232 CVI . . . K 2 2.099 36.178 -9.401 1 52.67 ? H232 CVI 301 C 1 
HETATM 52 H H233 CVI . . . K 2 0.649 35.566 -9.494 1 52.67 ? H233 CVI 301 C 1 
HETATM 53 H H241 CVI . . . K 2 -4.214 41.838 0.32 1 73.61 ? H241 CVI 301 C 1 
HETATM 54 H H242 CVI . . . K 2 -5.742 41.49 0.462 1 73.61 ? H242 CVI 301 C 1 
HETATM 55 H H243 CVI . . . K 2 -4.664 40.64 1.237 1 73.61 ? H243 CVI 301 C 1 
HETATM 56 H H251 CVI . . . K 2 -6.638 39.445 -0.597 1 72.39 ? H251 CVI 301 C 1 
HETATM 57 H H252 CVI . . . K 2 -5.596 38.519 0.132 1 72.39 ? H252 CVI 301 C 1 
HETATM 58 H H253 CVI . . . K 2 -5.656 38.549 -1.444 1 72.39 ? H253 CVI 301 C 1 
#
_model_server_stats.io_time_ms              30 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           290 
_model_server_stats.encode_time_ms          18 
_model_server_stats.element_count           58 
#