data_5VLM
#
_model_server_result.job_id            8eeB09hRSoWKiF_gSqVzkQ 
_model_server_result.datetime_utc      '2024-11-25 13:25:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5vlm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":301}' 
#
_entry.id    5VLM 
#
_exptl.entry_id    5VLM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              372.526 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CRYSTAL VIOLET' 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          97.1 
_cell.angle_gamma         90 
_cell.entry_id            5VLM 
_cell.length_a            97.397 
_cell.length_b            79.229 
_cell.length_c            105.579 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5VLM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
PISA dimeric 2 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,I,J 1 1 
C,D,K,L 2 1 
E,F,M,N 3 1 
G,H,O,P 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
? 2 M N N 
? 2 N N N 
? 2 O N N 
? 2 P N N 
#
_chem_comp.formula           'C25 H30 N3 1' 
_chem_comp.formula_weight    372.526 
_chem_comp.id                CVI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CRYSTAL VIOLET' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 CVI doub 70 n n 
C1 C8 CVI sing 71 n n 
C1 C14 CVI sing 72 n n 
C2 C3 CVI sing 73 n n 
C2 C7 CVI sing 74 n n 
C3 C4 CVI doub 75 n n 
C3 H31 CVI sing 76 n n 
C4 C5 CVI sing 77 n n 
C4 H41 CVI sing 78 n n 
C5 C6 CVI sing 79 n n 
C5 N1 CVI doub 80 n n 
C6 C7 CVI doub 81 n n 
C6 H61 CVI sing 82 n n 
C7 H71 CVI sing 83 n n 
C8 C9 CVI doub 84 n y 
C8 C13 CVI sing 85 n y 
C9 C10 CVI sing 86 n y 
C9 H91 CVI sing 87 n n 
C10 C11 CVI doub 88 n y 
C10 H101 CVI sing 89 n n 
C11 C12 CVI sing 90 n y 
C11 N2 CVI sing 91 n n 
C12 C13 CVI doub 92 n y 
C12 H121 CVI sing 93 n n 
C13 H131 CVI sing 94 n n 
C14 C15 CVI doub 95 n y 
C14 C19 CVI sing 96 n y 
C15 C16 CVI sing 97 n y 
C15 H151 CVI sing 98 n n 
C16 C17 CVI doub 99 n y 
C16 H161 CVI sing 100 n n 
C17 C18 CVI sing 101 n y 
C17 N3 CVI sing 102 n n 
C18 C19 CVI doub 103 n y 
C18 H181 CVI sing 104 n n 
C19 H191 CVI sing 105 n n 
C20 N1 CVI sing 106 n n 
C20 H201 CVI sing 107 n n 
C20 H202 CVI sing 108 n n 
C20 H203 CVI sing 109 n n 
C21 N1 CVI sing 110 n n 
C21 H211 CVI sing 111 n n 
C21 H212 CVI sing 112 n n 
C21 H213 CVI sing 113 n n 
C22 N2 CVI sing 114 n n 
C22 H221 CVI sing 115 n n 
C22 H222 CVI sing 116 n n 
C22 H223 CVI sing 117 n n 
C23 N2 CVI sing 118 n n 
C23 H231 CVI sing 119 n n 
C23 H232 CVI sing 120 n n 
C23 H233 CVI sing 121 n n 
C24 N3 CVI sing 122 n n 
C24 H241 CVI sing 123 n n 
C24 H242 CVI sing 124 n n 
C24 H243 CVI sing 125 n n 
C25 N3 CVI sing 126 n n 
C25 H251 CVI sing 127 n n 
C25 H252 CVI sing 128 n n 
C25 H253 CVI sing 129 n n 
#
_atom_sites.entry_id                     5VLM 
_atom_sites.fract_transf_matrix[1][1]    0.010267 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00128 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012622 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009545 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 2 CVI A 1 301 301 CVI CVI . 
J 2 CVI B 1 301 301 CVI CVI . 
K 2 CVI C 1 301 301 CVI CVI . 
L 2 CVI D 1 301 301 CVI CVI . 
M 2 CVI E 1 301 301 CVI CVI . 
N 2 CVI F 1 301 301 CVI CVI . 
O 2 CVI G 1 301 301 CVI CVI . 
P 2 CVI H 1 301 301 CVI CVI . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 CVI . . . M 2 -53.664 68.659 -22.364 1 60.82 ? C1 CVI 301 E 1 
HETATM 2 C C2 CVI . . . M 2 -54.516 69.717 -22.856 1 59.14 ? C2 CVI 301 E 1 
HETATM 3 C C3 CVI . . . M 2 -55.882 69.794 -22.505 1 58.42 ? C3 CVI 301 E 1 
HETATM 4 C C4 CVI . . . M 2 -56.702 70.811 -22.975 1 57.4 ? C4 CVI 301 E 1 
HETATM 5 C C5 CVI . . . M 2 -56.211 71.828 -23.841 1 56.61 ? C5 CVI 301 E 1 
HETATM 6 C C6 CVI . . . M 2 -54.834 71.743 -24.192 1 56.63 ? C6 CVI 301 E 1 
HETATM 7 C C7 CVI . . . M 2 -54.021 70.724 -23.713 1 57.82 ? C7 CVI 301 E 1 
HETATM 8 C C8 CVI . . . M 2 -52.493 68.241 -23.101 1 60.86 ? C8 CVI 301 E 1 
HETATM 9 C C9 CVI . . . M 2 -51.283 67.94 -22.433 1 59.27 ? C9 CVI 301 E 1 
HETATM 10 C C10 CVI . . . M 2 -50.147 67.526 -23.122 1 58.94 ? C10 CVI 301 E 1 
HETATM 11 C C11 CVI . . . M 2 -50.138 67.384 -24.541 1 58.08 ? C11 CVI 301 E 1 
HETATM 12 C C12 CVI . . . M 2 -51.361 67.691 -25.202 1 59.74 ? C12 CVI 301 E 1 
HETATM 13 C C13 CVI . . . M 2 -52.497 68.1 -24.506 1 60.81 ? C13 CVI 301 E 1 
HETATM 14 C C14 CVI . . . M 2 -53.885 68.074 -21.063 1 64.51 ? C14 CVI 301 E 1 
HETATM 15 C C15 CVI . . . M 2 -54.346 68.825 -19.958 1 65.42 ? C15 CVI 301 E 1 
HETATM 16 C C16 CVI . . . M 2 -54.543 68.236 -18.713 1 65.94 ? C16 CVI 301 E 1 
HETATM 17 C C17 CVI . . . M 2 -54.282 66.851 -18.485 1 66.45 ? C17 CVI 301 E 1 
HETATM 18 C C18 CVI . . . M 2 -53.813 66.111 -19.603 1 66.75 ? C18 CVI 301 E 1 
HETATM 19 C C19 CVI . . . M 2 -53.625 66.704 -20.846 1 65.79 ? C19 CVI 301 E 1 
HETATM 20 C C20 CVI . . . M 2 -58.447 72.864 -23.898 1 58.29 ? C20 CVI 301 E 1 
HETATM 21 C C21 CVI . . . M 2 -56.621 73.91 -25.191 1 57.06 ? C21 CVI 301 E 1 
HETATM 22 C C22 CVI . . . M 2 -47.722 66.652 -24.535 1 56.02 ? C22 CVI 301 E 1 
HETATM 23 C C23 CVI . . . M 2 -48.912 66.809 -26.661 1 56.2 ? C23 CVI 301 E 1 
HETATM 24 C C24 CVI . . . M 2 -54.968 67.031 -16.07 1 67.47 ? C24 CVI 301 E 1 
HETATM 25 C C25 CVI . . . M 2 -54.228 64.865 -16.935 1 69.07 ? C25 CVI 301 E 1 
HETATM 26 N N1 CVI . . . M 2 -57.065 72.853 -24.309 1 57.53 ? N1 CVI 301 E 1 
HETATM 27 N N2 CVI . . . M 2 -48.957 66.961 -25.226 1 56.2 ? N2 CVI 301 E 1 
HETATM 28 N N3 CVI . . . M 2 -54.489 66.264 -17.2 1 67.44 ? N3 CVI 301 E 1 
HETATM 29 H H31 CVI . . . M 2 -56.239 69.148 -21.939 1 70.11 ? H31 CVI 301 E 1 
HETATM 30 H H41 CVI . . . M 2 -57.593 70.812 -22.709 1 68.88 ? H41 CVI 301 E 1 
HETATM 31 H H61 CVI . . . M 2 -54.453 72.378 -24.755 1 67.96 ? H61 CVI 301 E 1 
HETATM 32 H H71 CVI . . . M 2 -53.127 70.7 -23.967 1 69.38 ? H71 CVI 301 E 1 
HETATM 33 H H91 CVI . . . M 2 -51.249 68.017 -21.507 1 71.12 ? H91 CVI 301 E 1 
HETATM 34 H H101 CVI . . . M 2 -49.377 67.34 -22.635 1 70.73 ? H101 CVI 301 E 1 
HETATM 35 H H121 CVI . . . M 2 -51.42 67.618 -26.127 1 71.69 ? H121 CVI 301 E 1 
HETATM 36 H H131 CVI . . . M 2 -53.276 68.291 -24.977 1 72.98 ? H131 CVI 301 E 1 
HETATM 37 H H151 CVI . . . M 2 -54.529 69.73 -20.07 1 78.51 ? H151 CVI 301 E 1 
HETATM 38 H H161 CVI . . . M 2 -54.852 68.768 -18.015 1 79.13 ? H161 CVI 301 E 1 
HETATM 39 H H181 CVI . . . M 2 -53.625 65.204 -19.517 1 80.1 ? H181 CVI 301 E 1 
HETATM 40 H H191 CVI . . . M 2 -53.312 66.187 -21.552 1 78.95 ? H191 CVI 301 E 1 
HETATM 41 H H201 CVI . . . M 2 -58.503 72.934 -22.932 1 69.95 ? H201 CVI 301 E 1 
HETATM 42 H H202 CVI . . . M 2 -58.948 73.596 -24.29 1 69.95 ? H202 CVI 301 E 1 
HETATM 43 H H203 CVI . . . M 2 -58.86 72.028 -24.164 1 69.95 ? H203 CVI 301 E 1 
HETATM 44 H H211 CVI . . . M 2 -55.679 73.783 -25.384 1 68.48 ? H211 CVI 301 E 1 
HETATM 45 H H212 CVI . . . M 2 -56.743 74.792 -24.806 1 68.48 ? H212 CVI 301 E 1 
HETATM 46 H H213 CVI . . . M 2 -57.108 73.869 -26.029 1 68.48 ? H213 CVI 301 E 1 
HETATM 47 H H221 CVI . . . M 2 -47.796 66.767 -23.575 1 67.22 ? H221 CVI 301 E 1 
HETATM 48 H H222 CVI . . . M 2 -47.495 65.727 -24.718 1 67.22 ? H222 CVI 301 E 1 
HETATM 49 H H223 CVI . . . M 2 -47.004 67.219 -24.858 1 67.22 ? H223 CVI 301 E 1 
HETATM 50 H H231 CVI . . . M 2 -48.697 65.907 -26.944 1 67.44 ? H231 CVI 301 E 1 
HETATM 51 H H232 CVI . . . M 2 -49.771 67.059 -27.037 1 67.44 ? H232 CVI 301 E 1 
HETATM 52 H H233 CVI . . . M 2 -48.234 67.409 -27.009 1 67.44 ? H233 CVI 301 E 1 
HETATM 53 H H241 CVI . . . M 2 -55.124 67.961 -16.293 1 80.96 ? H241 CVI 301 E 1 
HETATM 54 H H242 CVI . . . M 2 -55.804 66.641 -15.772 1 80.96 ? H242 CVI 301 E 1 
HETATM 55 H H243 CVI . . . M 2 -54.329 66.992 -15.341 1 80.96 ? H243 CVI 301 E 1 
HETATM 56 H H251 CVI . . . M 2 -53.554 64.808 -16.24 1 82.89 ? H251 CVI 301 E 1 
HETATM 57 H H252 CVI . . . M 2 -55.013 64.379 -16.64 1 82.89 ? H252 CVI 301 E 1 
HETATM 58 H H253 CVI . . . M 2 -53.882 64.446 -17.739 1 82.89 ? H253 CVI 301 E 1 
#
_model_server_stats.io_time_ms              34 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           328 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           58 
#