data_5VM0
#
_model_server_result.job_id            YEkQM_L5b7R7g5iUquknBw 
_model_server_result.datetime_utc      '2025-07-15 21:26:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5vm0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":201}' 
#
_entry.id    5VM0 
#
_exptl.entry_id    5VM0 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          113.74 
_cell.angle_gamma         90 
_cell.entry_id            5VM0 
_cell.length_a            101.113 
_cell.length_b            52.485 
_cell.length_c            57.463 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5VM0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
B,E,F,G,I 1 1 
A,C,D,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
? 2 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 24 A CYS 24 1_555 A SG CYS 98 A CYS 98 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.059 ? 
disulf ? disulf2 B SG CYS 24 B CYS 24 1_555 B SG CYS 98 B CYS 98 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.056 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 112 n n 
C1 C2 EDO sing 113 n n 
C1 H11 EDO sing 114 n n 
C1 H12 EDO sing 115 n n 
O1 HO1 EDO sing 116 n n 
C2 O2 EDO sing 117 n n 
C2 H21 EDO sing 118 n n 
C2 H22 EDO sing 119 n n 
O2 HO2 EDO sing 120 n n 
#
_atom_sites.entry_id                     5VM0 
_atom_sites.fract_transf_matrix[1][1]    0.00989 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00435 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019053 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.019011 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 EDO A 1 201 3 EDO EDO . 
D 3 9EG A 1 202 1 9EG TCC . 
E 2 EDO B 1 201 1 EDO EDO . 
F 2 EDO B 1 202 2 EDO EDO . 
G 3 9EG B 1 203 2 9EG TCC . 
H 4 HOH A 1 301 120 HOH HOH . 
H 4 HOH A 2 302 121 HOH HOH . 
H 4 HOH A 3 303 127 HOH HOH . 
H 4 HOH A 4 304 91 HOH HOH . 
H 4 HOH A 5 305 143 HOH HOH . 
H 4 HOH A 6 306 80 HOH HOH . 
H 4 HOH A 7 307 46 HOH HOH . 
H 4 HOH A 8 308 49 HOH HOH . 
H 4 HOH A 9 309 198 HOH HOH . 
H 4 HOH A 10 310 182 HOH HOH . 
H 4 HOH A 11 311 126 HOH HOH . 
H 4 HOH A 12 312 15 HOH HOH . 
H 4 HOH A 13 313 213 HOH HOH . 
H 4 HOH A 14 314 36 HOH HOH . 
H 4 HOH A 15 315 110 HOH HOH . 
H 4 HOH A 16 316 208 HOH HOH . 
H 4 HOH A 17 317 102 HOH HOH . 
H 4 HOH A 18 318 105 HOH HOH . 
H 4 HOH A 19 319 85 HOH HOH . 
H 4 HOH A 20 320 155 HOH HOH . 
H 4 HOH A 21 321 64 HOH HOH . 
H 4 HOH A 22 322 37 HOH HOH . 
H 4 HOH A 23 323 72 HOH HOH . 
H 4 HOH A 24 324 162 HOH HOH . 
H 4 HOH A 25 325 51 HOH HOH . 
H 4 HOH A 26 326 38 HOH HOH . 
H 4 HOH A 27 327 140 HOH HOH . 
H 4 HOH A 28 328 40 HOH HOH . 
H 4 HOH A 29 329 189 HOH HOH . 
H 4 HOH A 30 330 30 HOH HOH . 
H 4 HOH A 31 331 171 HOH HOH . 
H 4 HOH A 32 332 96 HOH HOH . 
H 4 HOH A 33 333 8 HOH HOH . 
H 4 HOH A 34 334 68 HOH HOH . 
H 4 HOH A 35 335 174 HOH HOH . 
H 4 HOH A 36 336 157 HOH HOH . 
H 4 HOH A 37 337 52 HOH HOH . 
H 4 HOH A 38 338 81 HOH HOH . 
H 4 HOH A 39 339 212 HOH HOH . 
H 4 HOH A 40 340 179 HOH HOH . 
H 4 HOH A 41 341 123 HOH HOH . 
H 4 HOH A 42 342 27 HOH HOH . 
H 4 HOH A 43 343 142 HOH HOH . 
H 4 HOH A 44 344 107 HOH HOH . 
H 4 HOH A 45 345 132 HOH HOH . 
H 4 HOH A 46 346 165 HOH HOH . 
H 4 HOH A 47 347 17 HOH HOH . 
H 4 HOH A 48 348 11 HOH HOH . 
H 4 HOH A 49 349 29 HOH HOH . 
H 4 HOH A 50 350 39 HOH HOH . 
H 4 HOH A 51 351 108 HOH HOH . 
H 4 HOH A 52 352 26 HOH HOH . 
H 4 HOH A 53 353 2 HOH HOH . 
H 4 HOH A 54 354 196 HOH HOH . 
H 4 HOH A 55 355 114 HOH HOH . 
H 4 HOH A 56 356 133 HOH HOH . 
H 4 HOH A 57 357 130 HOH HOH . 
H 4 HOH A 58 358 115 HOH HOH . 
H 4 HOH A 59 359 199 HOH HOH . 
H 4 HOH A 60 360 87 HOH HOH . 
H 4 HOH A 61 361 66 HOH HOH . 
H 4 HOH A 62 362 98 HOH HOH . 
H 4 HOH A 63 363 135 HOH HOH . 
H 4 HOH A 64 364 21 HOH HOH . 
H 4 HOH A 65 365 1 HOH HOH . 
H 4 HOH A 66 366 129 HOH HOH . 
H 4 HOH A 67 367 197 HOH HOH . 
H 4 HOH A 68 368 18 HOH HOH . 
H 4 HOH A 69 369 201 HOH HOH . 
H 4 HOH A 70 370 151 HOH HOH . 
H 4 HOH A 71 371 147 HOH HOH . 
H 4 HOH A 72 372 200 HOH HOH . 
H 4 HOH A 73 373 112 HOH HOH . 
H 4 HOH A 74 374 56 HOH HOH . 
H 4 HOH A 75 375 94 HOH HOH . 
H 4 HOH A 76 376 183 HOH HOH . 
H 4 HOH A 77 377 41 HOH HOH . 
H 4 HOH A 78 378 60 HOH HOH . 
H 4 HOH A 79 379 172 HOH HOH . 
H 4 HOH A 80 380 131 HOH HOH . 
H 4 HOH A 81 381 24 HOH HOH . 
H 4 HOH A 82 382 20 HOH HOH . 
H 4 HOH A 83 383 59 HOH HOH . 
H 4 HOH A 84 384 53 HOH HOH . 
H 4 HOH A 85 385 160 HOH HOH . 
H 4 HOH A 86 386 79 HOH HOH . 
H 4 HOH A 87 387 100 HOH HOH . 
H 4 HOH A 88 388 65 HOH HOH . 
H 4 HOH A 89 389 34 HOH HOH . 
H 4 HOH A 90 390 54 HOH HOH . 
H 4 HOH A 91 391 86 HOH HOH . 
H 4 HOH A 92 392 113 HOH HOH . 
H 4 HOH A 93 393 89 HOH HOH . 
H 4 HOH A 94 394 192 HOH HOH . 
H 4 HOH A 95 395 128 HOH HOH . 
H 4 HOH A 96 396 55 HOH HOH . 
H 4 HOH A 97 397 95 HOH HOH . 
H 4 HOH A 98 398 187 HOH HOH . 
H 4 HOH A 99 399 209 HOH HOH . 
H 4 HOH A 100 400 33 HOH HOH . 
H 4 HOH A 101 401 28 HOH HOH . 
H 4 HOH A 102 402 193 HOH HOH . 
H 4 HOH A 103 403 195 HOH HOH . 
I 4 HOH B 1 301 177 HOH HOH . 
I 4 HOH B 2 302 84 HOH HOH . 
I 4 HOH B 3 303 14 HOH HOH . 
I 4 HOH B 4 304 186 HOH HOH . 
I 4 HOH B 5 305 50 HOH HOH . 
I 4 HOH B 6 306 190 HOH HOH . 
I 4 HOH B 7 307 57 HOH HOH . 
I 4 HOH B 8 308 158 HOH HOH . 
I 4 HOH B 9 309 170 HOH HOH . 
I 4 HOH B 10 310 145 HOH HOH . 
I 4 HOH B 11 311 69 HOH HOH . 
I 4 HOH B 12 312 119 HOH HOH . 
I 4 HOH B 13 313 168 HOH HOH . 
I 4 HOH B 14 314 167 HOH HOH . 
I 4 HOH B 15 315 144 HOH HOH . 
I 4 HOH B 16 316 191 HOH HOH . 
I 4 HOH B 17 317 106 HOH HOH . 
I 4 HOH B 18 318 176 HOH HOH . 
I 4 HOH B 19 319 116 HOH HOH . 
I 4 HOH B 20 320 137 HOH HOH . 
I 4 HOH B 21 321 13 HOH HOH . 
I 4 HOH B 22 322 156 HOH HOH . 
I 4 HOH B 23 323 138 HOH HOH . 
I 4 HOH B 24 324 31 HOH HOH . 
I 4 HOH B 25 325 35 HOH HOH . 
I 4 HOH B 26 326 141 HOH HOH . 
I 4 HOH B 27 327 184 HOH HOH . 
I 4 HOH B 28 328 210 HOH HOH . 
I 4 HOH B 29 329 12 HOH HOH . 
I 4 HOH B 30 330 63 HOH HOH . 
I 4 HOH B 31 331 58 HOH HOH . 
I 4 HOH B 32 332 125 HOH HOH . 
I 4 HOH B 33 333 47 HOH HOH . 
I 4 HOH B 34 334 88 HOH HOH . 
I 4 HOH B 35 335 97 HOH HOH . 
I 4 HOH B 36 336 154 HOH HOH . 
I 4 HOH B 37 337 19 HOH HOH . 
I 4 HOH B 38 338 45 HOH HOH . 
I 4 HOH B 39 339 5 HOH HOH . 
I 4 HOH B 40 340 71 HOH HOH . 
I 4 HOH B 41 341 32 HOH HOH . 
I 4 HOH B 42 342 117 HOH HOH . 
I 4 HOH B 43 343 146 HOH HOH . 
I 4 HOH B 44 344 73 HOH HOH . 
I 4 HOH B 45 345 61 HOH HOH . 
I 4 HOH B 46 346 6 HOH HOH . 
I 4 HOH B 47 347 9 HOH HOH . 
I 4 HOH B 48 348 136 HOH HOH . 
I 4 HOH B 49 349 118 HOH HOH . 
I 4 HOH B 50 350 204 HOH HOH . 
I 4 HOH B 51 351 93 HOH HOH . 
I 4 HOH B 52 352 82 HOH HOH . 
I 4 HOH B 53 353 101 HOH HOH . 
I 4 HOH B 54 354 62 HOH HOH . 
I 4 HOH B 55 355 43 HOH HOH . 
I 4 HOH B 56 356 124 HOH HOH . 
I 4 HOH B 57 357 159 HOH HOH . 
I 4 HOH B 58 358 122 HOH HOH . 
I 4 HOH B 59 359 169 HOH HOH . 
I 4 HOH B 60 360 4 HOH HOH . 
I 4 HOH B 61 361 139 HOH HOH . 
I 4 HOH B 62 362 178 HOH HOH . 
I 4 HOH B 63 363 3 HOH HOH . 
I 4 HOH B 64 364 103 HOH HOH . 
I 4 HOH B 65 365 44 HOH HOH . 
I 4 HOH B 66 366 134 HOH HOH . 
I 4 HOH B 67 367 161 HOH HOH . 
I 4 HOH B 68 368 16 HOH HOH . 
I 4 HOH B 69 369 150 HOH HOH . 
I 4 HOH B 70 370 211 HOH HOH . 
I 4 HOH B 71 371 10 HOH HOH . 
I 4 HOH B 72 372 7 HOH HOH . 
I 4 HOH B 73 373 175 HOH HOH . 
I 4 HOH B 74 374 173 HOH HOH . 
I 4 HOH B 75 375 203 HOH HOH . 
I 4 HOH B 76 376 166 HOH HOH . 
I 4 HOH B 77 377 76 HOH HOH . 
I 4 HOH B 78 378 22 HOH HOH . 
I 4 HOH B 79 379 70 HOH HOH . 
I 4 HOH B 80 380 75 HOH HOH . 
I 4 HOH B 81 381 202 HOH HOH . 
I 4 HOH B 82 382 48 HOH HOH . 
I 4 HOH B 83 383 77 HOH HOH . 
I 4 HOH B 84 384 104 HOH HOH . 
I 4 HOH B 85 385 109 HOH HOH . 
I 4 HOH B 86 386 92 HOH HOH . 
I 4 HOH B 87 387 185 HOH HOH . 
I 4 HOH B 88 388 181 HOH HOH . 
I 4 HOH B 89 389 25 HOH HOH . 
I 4 HOH B 90 390 164 HOH HOH . 
I 4 HOH B 91 391 205 HOH HOH . 
I 4 HOH B 92 392 148 HOH HOH . 
I 4 HOH B 93 393 83 HOH HOH . 
I 4 HOH B 94 394 206 HOH HOH . 
I 4 HOH B 95 395 188 HOH HOH . 
I 4 HOH B 96 396 42 HOH HOH . 
I 4 HOH B 97 397 23 HOH HOH . 
I 4 HOH B 98 398 149 HOH HOH . 
I 4 HOH B 99 399 163 HOH HOH . 
I 4 HOH B 100 400 99 HOH HOH . 
I 4 HOH B 101 401 90 HOH HOH . 
I 4 HOH B 102 402 67 HOH HOH . 
I 4 HOH B 103 403 207 HOH HOH . 
I 4 HOH B 104 404 78 HOH HOH . 
I 4 HOH B 105 405 153 HOH HOH . 
I 4 HOH B 106 406 194 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . E 2 -19.786 11.512 -4.553 1 30.51 ? C1 EDO 201 B 1 
HETATM 2 O O1 EDO . . . E 2 -19.982 12.235 -5.79 1 25.58 ? O1 EDO 201 B 1 
HETATM 3 C C2 EDO . . . E 2 -19.085 10.165 -4.738 1 32.7 ? C2 EDO 201 B 1 
HETATM 4 O O2 EDO . . . E 2 -17.876 10.088 -3.944 1 31.65 ? O2 EDO 201 B 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           99 
_model_server_stats.create_model_time_ms    39 
_model_server_stats.query_time_ms           1890 
_model_server_stats.encode_time_ms          21 
_model_server_stats.element_count           4 
#