data_5VM6 # _model_server_result.job_id gD89ZhANAHTcqEyxh9XX9g _model_server_result.datetime_utc '2025-07-15 23:21:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5vm6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":204}' # _entry.id 5VM6 # _exptl.entry_id 5VM6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.18 _cell.angle_gamma 90 _cell.entry_id 5VM6 _cell.length_a 36.769 _cell.length_b 36.387 _cell.length_c 44.598 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5VM6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 E N N ? 2 F N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 24 A CYS 24 1_555 A SG CYS 98 A CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? metalc ? metalc1 A OE2 GLU 48 A GLU 48 1_555 G NA NA . A NA 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.562 ? metalc ? metalc2 C O4 SO4 . A SO4 202 1_555 G NA NA . A NA 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.672 ? metalc ? metalc3 G NA NA . A NA 206 1_555 I O HOH . A HOH 364 1_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 319 n n S O2 SO4 doub 320 n n S O3 SO4 sing 321 n n S O4 SO4 sing 322 n n # _atom_sites.entry_id 5VM6 _atom_sites.fract_transf_matrix[1][1] 0.027197 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.010535 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.027482 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.024046 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 201 1 SO4 SO4 . C 2 SO4 A 1 202 1 SO4 SO4 . D 3 9EG A 1 203 1 9EG TCC . E 2 SO4 A 1 204 1 SO4 SO4 . F 2 SO4 A 1 205 1 SO4 SO4 . G 4 NA A 1 206 1 NA NA . H 2 SO4 A 1 207 1 SO4 SO4 . I 5 HOH A 1 301 7 HOH HOH . I 5 HOH A 2 302 78 HOH HOH . I 5 HOH A 3 303 28 HOH HOH . I 5 HOH A 4 304 54 HOH HOH . I 5 HOH A 5 305 2 HOH HOH . I 5 HOH A 6 306 99 HOH HOH . I 5 HOH A 7 307 15 HOH HOH . I 5 HOH A 8 308 90 HOH HOH . I 5 HOH A 9 309 4 HOH HOH . I 5 HOH A 10 310 35 HOH HOH . I 5 HOH A 11 311 77 HOH HOH . I 5 HOH A 12 312 29 HOH HOH . I 5 HOH A 13 313 91 HOH HOH . I 5 HOH A 14 314 71 HOH HOH . I 5 HOH A 15 315 45 HOH HOH . I 5 HOH A 16 316 39 HOH HOH . I 5 HOH A 17 317 82 HOH HOH . I 5 HOH A 18 318 25 HOH HOH . I 5 HOH A 19 319 52 HOH HOH . I 5 HOH A 20 320 64 HOH HOH . I 5 HOH A 21 321 66 HOH HOH . I 5 HOH A 22 322 36 HOH HOH . I 5 HOH A 23 323 18 HOH HOH . I 5 HOH A 24 324 80 HOH HOH . I 5 HOH A 25 325 14 HOH HOH . I 5 HOH A 26 326 23 HOH HOH . I 5 HOH A 27 327 69 HOH HOH . I 5 HOH A 28 328 10 HOH HOH . I 5 HOH A 29 329 57 HOH HOH . I 5 HOH A 30 330 47 HOH HOH . I 5 HOH A 31 331 72 HOH HOH . I 5 HOH A 32 332 24 HOH HOH . I 5 HOH A 33 333 16 HOH HOH . I 5 HOH A 34 334 49 HOH HOH . I 5 HOH A 35 335 11 HOH HOH . I 5 HOH A 36 336 31 HOH HOH . I 5 HOH A 37 337 44 HOH HOH . I 5 HOH A 38 338 8 HOH HOH . I 5 HOH A 39 339 34 HOH HOH . I 5 HOH A 40 340 1 HOH HOH . I 5 HOH A 41 341 19 HOH HOH . I 5 HOH A 42 342 53 HOH HOH . I 5 HOH A 43 343 43 HOH HOH . I 5 HOH A 44 344 61 HOH HOH . I 5 HOH A 45 345 89 HOH HOH . I 5 HOH A 46 346 12 HOH HOH . I 5 HOH A 47 347 98 HOH HOH . I 5 HOH A 48 348 32 HOH HOH . I 5 HOH A 49 349 50 HOH HOH . I 5 HOH A 50 350 56 HOH HOH . I 5 HOH A 51 351 13 HOH HOH . I 5 HOH A 52 352 21 HOH HOH . I 5 HOH A 53 353 65 HOH HOH . I 5 HOH A 54 354 3 HOH HOH . I 5 HOH A 55 355 86 HOH HOH . I 5 HOH A 56 356 46 HOH HOH . I 5 HOH A 57 357 48 HOH HOH . I 5 HOH A 58 358 62 HOH HOH . I 5 HOH A 59 359 85 HOH HOH . I 5 HOH A 60 360 5 HOH HOH . I 5 HOH A 61 361 40 HOH HOH . I 5 HOH A 62 362 42 HOH HOH . I 5 HOH A 63 363 60 HOH HOH . I 5 HOH A 64 364 63 HOH HOH . I 5 HOH A 65 365 6 HOH HOH . I 5 HOH A 66 366 9 HOH HOH . I 5 HOH A 67 367 37 HOH HOH . I 5 HOH A 68 368 22 HOH HOH . I 5 HOH A 69 369 75 HOH HOH . I 5 HOH A 70 370 76 HOH HOH . I 5 HOH A 71 371 41 HOH HOH . I 5 HOH A 72 372 59 HOH HOH . I 5 HOH A 73 373 67 HOH HOH . I 5 HOH A 74 374 79 HOH HOH . I 5 HOH A 75 375 26 HOH HOH . I 5 HOH A 76 376 95 HOH HOH . I 5 HOH A 77 377 74 HOH HOH . I 5 HOH A 78 378 84 HOH HOH . I 5 HOH A 79 379 92 HOH HOH . I 5 HOH A 80 380 68 HOH HOH . I 5 HOH A 81 381 58 HOH HOH . I 5 HOH A 82 382 88 HOH HOH . I 5 HOH A 83 383 73 HOH HOH . I 5 HOH A 84 384 51 HOH HOH . I 5 HOH A 85 385 93 HOH HOH . I 5 HOH A 86 386 30 HOH HOH . I 5 HOH A 87 387 27 HOH HOH . I 5 HOH A 88 388 97 HOH HOH . I 5 HOH A 89 389 83 HOH HOH . I 5 HOH A 90 390 96 HOH HOH . I 5 HOH A 91 391 38 HOH HOH . I 5 HOH A 92 392 33 HOH HOH . I 5 HOH A 93 393 20 HOH HOH . I 5 HOH A 94 394 94 HOH HOH . I 5 HOH A 95 395 17 HOH HOH . I 5 HOH A 96 396 81 HOH HOH . I 5 HOH A 97 397 55 HOH HOH . I 5 HOH A 98 398 70 HOH HOH . I 5 HOH A 99 399 87 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . E 2 30.101 -9.914 -2.551 1 10.98 ? S SO4 204 A 1 HETATM 2 O O1 SO4 . . . E 2 30.795 -8.695 -2.225 1 14.36 ? O1 SO4 204 A 1 HETATM 3 O O2 SO4 . . . E 2 29.896 -10.131 -3.987 1 10.96 ? O2 SO4 204 A 1 HETATM 4 O O3 SO4 . . . E 2 29.055 -10.351 -1.715 1 14.71 ? O3 SO4 204 A 1 HETATM 5 O O4 SO4 . . . E 2 31.147 -10.898 -2.156 1 15.26 ? O4 SO4 204 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 703 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 5 #