data_5VNE # _model_server_result.job_id zk8gHPwzmEbJxhtpgggFEg _model_server_result.datetime_utc '2024-12-27 03:50:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5vne # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":801}' # _entry.id 5VNE # _exptl.entry_id 5VNE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.63 _cell.angle_gamma 90 _cell.entry_id 5VNE _cell.length_a 157.757 _cell.length_b 96.501 _cell.length_c 126.574 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5VNE _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 61 A CYS 61 1_555 E ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? metalc ? metalc2 A SG CYS 66 A CYS 66 1_555 E ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc3 A SG CYS 85 A CYS 85 1_555 E ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc4 A SG CYS 88 A CYS 88 1_555 E ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc5 B SG CYS 86 B CYS 431 1_555 F ZN ZN . B ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.469 ? metalc ? metalc6 B SG CYS 89 B CYS 434 1_555 F ZN ZN . B ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? metalc ? metalc7 B SG CYS 107 B CYS 452 1_555 F ZN ZN . B ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.573 ? metalc ? metalc8 B SG CYS 110 B CYS 455 1_555 F ZN ZN . B ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5VNE _atom_sites.fract_transf_matrix[1][1] 0.006339 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000181 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010363 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007904 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 ZN A 1 801 1 ZN ZN . F 5 ZN B 1 1101 1 ZN ZN . G 6 HOH A 1 901 77 HOH HOH . G 6 HOH A 2 902 27 HOH HOH . G 6 HOH A 3 903 17 HOH HOH . G 6 HOH A 4 904 72 HOH HOH . G 6 HOH A 5 905 24 HOH HOH . G 6 HOH A 6 906 21 HOH HOH . G 6 HOH A 7 907 30 HOH HOH . G 6 HOH A 8 908 89 HOH HOH . G 6 HOH A 9 909 8 HOH HOH . G 6 HOH A 10 910 28 HOH HOH . G 6 HOH A 11 911 95 HOH HOH . G 6 HOH A 12 912 39 HOH HOH . G 6 HOH A 13 913 10 HOH HOH . G 6 HOH A 14 914 75 HOH HOH . G 6 HOH A 15 915 16 HOH HOH . G 6 HOH A 16 916 3 HOH HOH . G 6 HOH A 17 917 71 HOH HOH . G 6 HOH A 18 918 78 HOH HOH . G 6 HOH A 19 919 64 HOH HOH . G 6 HOH A 20 920 73 HOH HOH . G 6 HOH A 21 921 52 HOH HOH . G 6 HOH A 22 922 49 HOH HOH . G 6 HOH A 23 923 41 HOH HOH . G 6 HOH A 24 924 22 HOH HOH . G 6 HOH A 25 925 7 HOH HOH . G 6 HOH A 26 926 69 HOH HOH . G 6 HOH A 27 927 66 HOH HOH . G 6 HOH A 28 928 57 HOH HOH . G 6 HOH A 29 929 50 HOH HOH . G 6 HOH A 30 930 26 HOH HOH . G 6 HOH A 31 931 5 HOH HOH . G 6 HOH A 32 932 20 HOH HOH . G 6 HOH A 33 933 6 HOH HOH . G 6 HOH A 34 934 97 HOH HOH . G 6 HOH A 35 935 48 HOH HOH . G 6 HOH A 36 936 46 HOH HOH . G 6 HOH A 37 937 93 HOH HOH . G 6 HOH A 38 938 18 HOH HOH . G 6 HOH A 39 939 2 HOH HOH . G 6 HOH A 40 940 29 HOH HOH . G 6 HOH A 41 941 62 HOH HOH . G 6 HOH A 42 942 59 HOH HOH . G 6 HOH A 43 943 63 HOH HOH . G 6 HOH A 44 944 92 HOH HOH . G 6 HOH A 45 945 34 HOH HOH . G 6 HOH A 46 946 68 HOH HOH . G 6 HOH A 47 947 99 HOH HOH . G 6 HOH A 48 948 33 HOH HOH . G 6 HOH A 49 949 31 HOH HOH . G 6 HOH A 50 950 23 HOH HOH . G 6 HOH A 51 951 65 HOH HOH . G 6 HOH A 52 952 85 HOH HOH . G 6 HOH A 53 953 67 HOH HOH . G 6 HOH A 54 954 35 HOH HOH . G 6 HOH A 55 955 43 HOH HOH . G 6 HOH A 56 956 98 HOH HOH . G 6 HOH A 57 957 96 HOH HOH . H 6 HOH B 1 1201 74 HOH HOH . H 6 HOH B 2 1202 13 HOH HOH . H 6 HOH B 3 1203 84 HOH HOH . H 6 HOH B 4 1204 58 HOH HOH . H 6 HOH B 5 1205 54 HOH HOH . H 6 HOH B 6 1206 82 HOH HOH . H 6 HOH B 7 1207 86 HOH HOH . H 6 HOH B 8 1208 1 HOH HOH . H 6 HOH B 9 1209 61 HOH HOH . H 6 HOH B 10 1210 40 HOH HOH . H 6 HOH B 11 1211 80 HOH HOH . H 6 HOH B 12 1212 12 HOH HOH . H 6 HOH B 13 1213 60 HOH HOH . H 6 HOH B 14 1214 11 HOH HOH . H 6 HOH B 15 1215 87 HOH HOH . H 6 HOH B 16 1216 44 HOH HOH . H 6 HOH B 17 1217 47 HOH HOH . H 6 HOH B 18 1218 83 HOH HOH . H 6 HOH B 19 1219 94 HOH HOH . H 6 HOH B 20 1220 25 HOH HOH . H 6 HOH B 21 1221 15 HOH HOH . H 6 HOH B 22 1222 4 HOH HOH . H 6 HOH B 23 1223 9 HOH HOH . H 6 HOH B 24 1224 45 HOH HOH . H 6 HOH B 25 1225 37 HOH HOH . H 6 HOH B 26 1226 53 HOH HOH . H 6 HOH B 27 1227 32 HOH HOH . H 6 HOH B 28 1228 36 HOH HOH . H 6 HOH B 29 1229 91 HOH HOH . H 6 HOH B 30 1230 70 HOH HOH . H 6 HOH B 31 1231 19 HOH HOH . H 6 HOH B 32 1232 42 HOH HOH . H 6 HOH B 33 1233 56 HOH HOH . H 6 HOH B 34 1234 55 HOH HOH . H 6 HOH B 35 1235 51 HOH HOH . H 6 HOH B 36 1236 14 HOH HOH . H 6 HOH B 37 1237 90 HOH HOH . H 6 HOH B 38 1238 88 HOH HOH . I 6 HOH C 1 201 79 HOH HOH . I 6 HOH C 2 202 76 HOH HOH . I 6 HOH C 3 203 38 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 5 _atom_site.Cartn_x 122.119 _atom_site.Cartn_y 95.014 _atom_site.Cartn_z -16.153 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 91.16 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 801 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #