data_5VNF
#
_model_server_result.job_id            JRjp3nJL3njzLq6nBGbzaA 
_model_server_result.datetime_utc      '2024-10-13 00:21:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5vnf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":1101}' 
#
_entry.id    5VNF 
#
_exptl.entry_id    5VNF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              65.409 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ZINC ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90.12 
_cell.angle_gamma         90 
_cell.entry_id            5VNF 
_cell.length_a            147.824 
_cell.length_b            97.077 
_cell.length_c            129.82 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5VNF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 E N N 
? 5 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 61 A CYS 61 1_555 E ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? 
metalc ? metalc2 A SG CYS 66 A CYS 66 1_555 E ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.443 ? 
metalc ? metalc3 A SG CYS 85 A CYS 85 1_555 E ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? 
metalc ? metalc4 A SG CYS 88 A CYS 88 1_555 E ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? 
metalc ? metalc5 B SG CYS 86 B CYS 431 1_555 F ZN ZN . B ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? 
metalc ? metalc6 B SG CYS 89 B CYS 434 1_555 F ZN ZN . B ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.66 ? 
metalc ? metalc7 B SG CYS 107 B CYS 452 1_555 F ZN ZN . B ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? 
metalc ? metalc8 B SG CYS 110 B CYS 455 1_555 F ZN ZN . B ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? 
#
_chem_comp.formula           'Zn 2' 
_chem_comp.formula_weight    65.409 
_chem_comp.id                ZN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ZINC ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5VNF 
_atom_sites.fract_transf_matrix[1][1]    0.006765 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000014 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010301 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007703 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 5 ZN A 1 801 1 ZN ZN . 
F 5 ZN B 1 1101 1 ZN ZN . 
G 6 HOH A 1 901 94 HOH HOH . 
G 6 HOH A 2 902 99 HOH HOH . 
G 6 HOH A 3 903 51 HOH HOH . 
G 6 HOH A 4 904 81 HOH HOH . 
G 6 HOH A 5 905 57 HOH HOH . 
G 6 HOH A 6 906 8 HOH HOH . 
G 6 HOH A 7 907 6 HOH HOH . 
G 6 HOH A 8 908 84 HOH HOH . 
G 6 HOH A 9 909 70 HOH HOH . 
G 6 HOH A 10 910 106 HOH HOH . 
G 6 HOH A 11 911 91 HOH HOH . 
G 6 HOH A 12 912 7 HOH HOH . 
G 6 HOH A 13 913 54 HOH HOH . 
G 6 HOH A 14 914 9 HOH HOH . 
G 6 HOH A 15 915 36 HOH HOH . 
G 6 HOH A 16 916 97 HOH HOH . 
G 6 HOH A 17 917 4 HOH HOH . 
G 6 HOH A 18 918 90 HOH HOH . 
G 6 HOH A 19 919 98 HOH HOH . 
G 6 HOH A 20 920 16 HOH HOH . 
G 6 HOH A 21 921 5 HOH HOH . 
G 6 HOH A 22 922 78 HOH HOH . 
G 6 HOH A 23 923 44 HOH HOH . 
G 6 HOH A 24 924 89 HOH HOH . 
G 6 HOH A 25 925 59 HOH HOH . 
G 6 HOH A 26 926 45 HOH HOH . 
G 6 HOH A 27 927 33 HOH HOH . 
G 6 HOH A 28 928 66 HOH HOH . 
G 6 HOH A 29 929 28 HOH HOH . 
G 6 HOH A 30 930 79 HOH HOH . 
G 6 HOH A 31 931 64 HOH HOH . 
G 6 HOH A 32 932 108 HOH HOH . 
G 6 HOH A 33 933 18 HOH HOH . 
G 6 HOH A 34 934 19 HOH HOH . 
G 6 HOH A 35 935 61 HOH HOH . 
G 6 HOH A 36 936 104 HOH HOH . 
G 6 HOH A 37 937 76 HOH HOH . 
G 6 HOH A 38 938 46 HOH HOH . 
G 6 HOH A 39 939 43 HOH HOH . 
G 6 HOH A 40 940 71 HOH HOH . 
H 6 HOH B 1 1201 20 HOH HOH . 
H 6 HOH B 2 1202 88 HOH HOH . 
H 6 HOH B 3 1203 22 HOH HOH . 
H 6 HOH B 4 1204 12 HOH HOH . 
H 6 HOH B 5 1205 85 HOH HOH . 
H 6 HOH B 6 1206 107 HOH HOH . 
H 6 HOH B 7 1207 52 HOH HOH . 
H 6 HOH B 8 1208 95 HOH HOH . 
H 6 HOH B 9 1209 29 HOH HOH . 
H 6 HOH B 10 1210 77 HOH HOH . 
H 6 HOH B 11 1211 87 HOH HOH . 
H 6 HOH B 12 1212 74 HOH HOH . 
H 6 HOH B 13 1213 38 HOH HOH . 
H 6 HOH B 14 1214 25 HOH HOH . 
H 6 HOH B 15 1215 101 HOH HOH . 
H 6 HOH B 16 1216 49 HOH HOH . 
H 6 HOH B 17 1217 21 HOH HOH . 
H 6 HOH B 18 1218 10 HOH HOH . 
H 6 HOH B 19 1219 109 HOH HOH . 
H 6 HOH B 20 1220 42 HOH HOH . 
H 6 HOH B 21 1221 35 HOH HOH . 
H 6 HOH B 22 1222 40 HOH HOH . 
H 6 HOH B 23 1223 80 HOH HOH . 
H 6 HOH B 24 1224 13 HOH HOH . 
H 6 HOH B 25 1225 15 HOH HOH . 
H 6 HOH B 26 1226 27 HOH HOH . 
H 6 HOH B 27 1227 31 HOH HOH . 
H 6 HOH B 28 1228 53 HOH HOH . 
H 6 HOH B 29 1229 63 HOH HOH . 
H 6 HOH B 30 1230 105 HOH HOH . 
H 6 HOH B 31 1231 72 HOH HOH . 
H 6 HOH B 32 1232 11 HOH HOH . 
H 6 HOH B 33 1233 103 HOH HOH . 
H 6 HOH B 34 1234 24 HOH HOH . 
H 6 HOH B 35 1235 82 HOH HOH . 
H 6 HOH B 36 1236 73 HOH HOH . 
H 6 HOH B 37 1237 17 HOH HOH . 
H 6 HOH B 38 1238 32 HOH HOH . 
H 6 HOH B 39 1239 2 HOH HOH . 
H 6 HOH B 40 1240 100 HOH HOH . 
H 6 HOH B 41 1241 41 HOH HOH . 
H 6 HOH B 42 1242 86 HOH HOH . 
H 6 HOH B 43 1243 58 HOH HOH . 
H 6 HOH B 44 1244 37 HOH HOH . 
H 6 HOH B 45 1245 26 HOH HOH . 
H 6 HOH B 46 1246 50 HOH HOH . 
H 6 HOH B 47 1247 62 HOH HOH . 
H 6 HOH B 48 1248 34 HOH HOH . 
H 6 HOH B 49 1249 3 HOH HOH . 
H 6 HOH B 50 1250 1 HOH HOH . 
H 6 HOH B 51 1251 111 HOH HOH . 
H 6 HOH B 52 1252 55 HOH HOH . 
H 6 HOH B 53 1253 83 HOH HOH . 
H 6 HOH B 54 1254 69 HOH HOH . 
H 6 HOH B 55 1255 23 HOH HOH . 
H 6 HOH B 56 1256 65 HOH HOH . 
H 6 HOH B 57 1257 47 HOH HOH . 
H 6 HOH B 58 1258 30 HOH HOH . 
H 6 HOH B 59 1259 92 HOH HOH . 
H 6 HOH B 60 1260 93 HOH HOH . 
H 6 HOH B 61 1261 102 HOH HOH . 
H 6 HOH B 62 1262 96 HOH HOH . 
H 6 HOH B 63 1263 67 HOH HOH . 
I 6 HOH C 1 201 75 HOH HOH . 
I 6 HOH C 2 202 39 HOH HOH . 
I 6 HOH C 3 203 14 HOH HOH . 
I 6 HOH C 4 204 48 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           ZN 
_atom_site.label_atom_id         ZN 
_atom_site.label_comp_id         ZN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         F 
_atom_site.label_entity_id       5 
_atom_site.Cartn_x               104.901 
_atom_site.Cartn_y               -56.526 
_atom_site.Cartn_z               184.057 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        104.72 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          ZN 
_atom_site.auth_comp_id          ZN 
_atom_site.auth_seq_id           1101 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              82 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    29 
_model_server_stats.query_time_ms           283 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           1 
#