data_5VNI # _model_server_result.job_id BKPwK6W6D5dioHQkd7HVfQ _model_server_result.datetime_utc '2024-11-14 15:13:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5vni # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":801}' # _entry.id 5VNI # _exptl.entry_id 5VNI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.06 _cell.angle_gamma 90 _cell.entry_id 5VNI _cell.length_a 147.606 _cell.length_b 96.065 _cell.length_c 129.998 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5VNI _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 61 A CYS 61 1_555 E ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc2 A SG CYS 66 A CYS 66 1_555 E ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc3 A SG CYS 85 A CYS 85 1_555 E ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc4 A SG CYS 88 A CYS 88 1_555 E ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc5 B SG CYS 86 B CYS 431 1_555 F ZN ZN . B ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc6 B SG CYS 89 B CYS 434 1_555 F ZN ZN . B ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc7 B SG CYS 107 B CYS 452 1_555 F ZN ZN . B ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc8 B SG CYS 110 B CYS 455 1_555 F ZN ZN . B ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5VNI _atom_sites.fract_transf_matrix[1][1] 0.006775 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000007 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01041 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007692 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 ZN A 1 801 1 ZN ZN . F 5 ZN B 1 1101 1 ZN ZN . G 6 HOH A 1 901 27 HOH HOH . G 6 HOH A 2 902 37 HOH HOH . G 6 HOH A 3 903 45 HOH HOH . G 6 HOH A 4 904 9 HOH HOH . G 6 HOH A 5 905 17 HOH HOH . G 6 HOH A 6 906 39 HOH HOH . G 6 HOH A 7 907 42 HOH HOH . G 6 HOH A 8 908 22 HOH HOH . G 6 HOH A 9 909 43 HOH HOH . G 6 HOH A 10 910 3 HOH HOH . G 6 HOH A 11 911 13 HOH HOH . G 6 HOH A 12 912 24 HOH HOH . G 6 HOH A 13 913 21 HOH HOH . G 6 HOH A 14 914 5 HOH HOH . G 6 HOH A 15 915 30 HOH HOH . G 6 HOH A 16 916 40 HOH HOH . G 6 HOH A 17 917 20 HOH HOH . G 6 HOH A 18 918 2 HOH HOH . G 6 HOH A 19 919 23 HOH HOH . H 6 HOH B 1 1201 14 HOH HOH . H 6 HOH B 2 1202 10 HOH HOH . H 6 HOH B 3 1203 41 HOH HOH . H 6 HOH B 4 1204 15 HOH HOH . H 6 HOH B 5 1205 8 HOH HOH . H 6 HOH B 6 1206 19 HOH HOH . H 6 HOH B 7 1207 32 HOH HOH . H 6 HOH B 8 1208 1 HOH HOH . H 6 HOH B 9 1209 11 HOH HOH . H 6 HOH B 10 1210 29 HOH HOH . H 6 HOH B 11 1211 25 HOH HOH . H 6 HOH B 12 1212 7 HOH HOH . H 6 HOH B 13 1213 31 HOH HOH . H 6 HOH B 14 1214 35 HOH HOH . H 6 HOH B 15 1215 34 HOH HOH . H 6 HOH B 16 1216 16 HOH HOH . H 6 HOH B 17 1217 12 HOH HOH . H 6 HOH B 18 1218 4 HOH HOH . H 6 HOH B 19 1219 18 HOH HOH . H 6 HOH B 20 1220 38 HOH HOH . H 6 HOH B 21 1221 6 HOH HOH . H 6 HOH B 22 1222 46 HOH HOH . I 6 HOH C 1 201 36 HOH HOH . I 6 HOH C 2 202 33 HOH HOH . I 6 HOH C 3 203 28 HOH HOH . I 6 HOH C 4 204 26 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 5 _atom_site.Cartn_x 32.239 _atom_site.Cartn_y -94.773 _atom_site.Cartn_z -16.229 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 251.5 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 801 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 226 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 1 #