data_5VNJ # _model_server_result.job_id vn-sADqtq7Dq_sNNsES-1g _model_server_result.datetime_utc '2024-10-13 19:19:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5vnj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1101}' # _entry.id 5VNJ # _exptl.entry_id 5VNJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.22 _cell.angle_gamma 90 _cell.entry_id 5VNJ _cell.length_a 147.955 _cell.length_b 96.978 _cell.length_c 129.549 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5VNJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 61 A CYS 61 1_555 E ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? metalc ? metalc2 A SG CYS 66 A CYS 66 1_555 E ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? metalc ? metalc3 A SG CYS 85 A CYS 85 1_555 E ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc4 A SG CYS 88 A CYS 88 1_555 E ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc5 B SG CYS 86 B CYS 431 1_555 F ZN ZN . B ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc6 B SG CYS 89 B CYS 434 1_555 F ZN ZN . B ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? metalc ? metalc7 B SG CYS 107 B CYS 452 1_555 F ZN ZN . B ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc8 B SG CYS 110 B CYS 455 1_555 F ZN ZN . B ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.545 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5VNJ _atom_sites.fract_transf_matrix[1][1] 0.006759 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000026 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010312 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007719 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 ZN A 1 801 1 ZN ZN . F 5 ZN B 1 1101 1 ZN ZN . G 6 HOH A 1 901 52 HOH HOH . G 6 HOH A 2 902 23 HOH HOH . G 6 HOH A 3 903 21 HOH HOH . G 6 HOH A 4 904 77 HOH HOH . G 6 HOH A 5 905 3 HOH HOH . G 6 HOH A 6 906 27 HOH HOH . G 6 HOH A 7 907 78 HOH HOH . G 6 HOH A 8 908 7 HOH HOH . G 6 HOH A 9 909 93 HOH HOH . G 6 HOH A 10 910 64 HOH HOH . G 6 HOH A 11 911 16 HOH HOH . G 6 HOH A 12 912 20 HOH HOH . G 6 HOH A 13 913 68 HOH HOH . G 6 HOH A 14 914 10 HOH HOH . G 6 HOH A 15 915 17 HOH HOH . G 6 HOH A 16 916 71 HOH HOH . G 6 HOH A 17 917 75 HOH HOH . G 6 HOH A 18 918 98 HOH HOH . G 6 HOH A 19 919 35 HOH HOH . G 6 HOH A 20 920 72 HOH HOH . G 6 HOH A 21 921 29 HOH HOH . G 6 HOH A 22 922 34 HOH HOH . G 6 HOH A 23 923 43 HOH HOH . G 6 HOH A 24 924 57 HOH HOH . G 6 HOH A 25 925 2 HOH HOH . G 6 HOH A 26 926 96 HOH HOH . G 6 HOH A 27 927 28 HOH HOH . G 6 HOH A 28 928 45 HOH HOH . G 6 HOH A 29 929 104 HOH HOH . G 6 HOH A 30 930 92 HOH HOH . G 6 HOH A 31 931 8 HOH HOH . G 6 HOH A 32 932 103 HOH HOH . G 6 HOH A 33 933 63 HOH HOH . G 6 HOH A 34 934 85 HOH HOH . G 6 HOH A 35 935 62 HOH HOH . G 6 HOH A 36 936 99 HOH HOH . G 6 HOH A 37 937 22 HOH HOH . G 6 HOH A 38 938 67 HOH HOH . G 6 HOH A 39 939 30 HOH HOH . G 6 HOH A 40 940 26 HOH HOH . H 6 HOH B 1 1201 12 HOH HOH . H 6 HOH B 2 1202 86 HOH HOH . H 6 HOH B 3 1203 54 HOH HOH . H 6 HOH B 4 1204 101 HOH HOH . H 6 HOH B 5 1205 32 HOH HOH . H 6 HOH B 6 1206 83 HOH HOH . H 6 HOH B 7 1207 40 HOH HOH . H 6 HOH B 8 1208 87 HOH HOH . H 6 HOH B 9 1209 100 HOH HOH . H 6 HOH B 10 1210 42 HOH HOH . H 6 HOH B 11 1211 61 HOH HOH . H 6 HOH B 12 1212 13 HOH HOH . H 6 HOH B 13 1213 11 HOH HOH . H 6 HOH B 14 1214 1 HOH HOH . H 6 HOH B 15 1215 80 HOH HOH . H 6 HOH B 16 1216 4 HOH HOH . H 6 HOH B 17 1217 9 HOH HOH . H 6 HOH B 18 1218 37 HOH HOH . H 6 HOH B 19 1219 102 HOH HOH . H 6 HOH B 20 1220 38 HOH HOH . H 6 HOH B 21 1221 90 HOH HOH . H 6 HOH B 22 1222 15 HOH HOH . H 6 HOH B 23 1223 74 HOH HOH . H 6 HOH B 24 1224 56 HOH HOH . H 6 HOH B 25 1225 55 HOH HOH . H 6 HOH B 26 1226 53 HOH HOH . H 6 HOH B 27 1227 51 HOH HOH . H 6 HOH B 28 1228 36 HOH HOH . H 6 HOH B 29 1229 70 HOH HOH . H 6 HOH B 30 1230 25 HOH HOH . H 6 HOH B 31 1231 46 HOH HOH . H 6 HOH B 32 1232 91 HOH HOH . H 6 HOH B 33 1233 88 HOH HOH . H 6 HOH B 34 1234 82 HOH HOH . I 6 HOH C 1 201 79 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 5 _atom_site.Cartn_x 105.95 _atom_site.Cartn_y -57.368 _atom_site.Cartn_z 54.042 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 174.88 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 1101 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 159 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 1 #