data_5VNL # _model_server_result.job_id K6bJPr7jmNg1Qu2_v-mQCQ _model_server_result.datetime_utc '2024-11-14 15:05:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5vnl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1101}' # _entry.id 5VNL # _exptl.entry_id 5VNL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.15 _cell.angle_gamma 90 _cell.entry_id 5VNL _cell.length_a 147.756 _cell.length_b 96.77 _cell.length_c 129.59 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5VNL _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? trimeric 3 author_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I 1 1 A,B,C,D,E,F,G,H,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 61 A CYS 61 1_555 D ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? metalc ? metalc2 A SG CYS 66 A CYS 66 1_555 D ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? metalc ? metalc3 A SG CYS 85 A CYS 85 1_555 D ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc4 A SG CYS 88 A CYS 88 1_555 D ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? metalc ? metalc5 B SG CYS 86 B CYS 431 1_555 E ZN ZN . B ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? metalc ? metalc6 B SG CYS 89 B CYS 434 1_555 E ZN ZN . B ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc7 B SG CYS 107 B CYS 452 1_555 E ZN ZN . B ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc8 B SG CYS 110 B CYS 455 1_555 E ZN ZN . B ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5VNL _atom_sites.fract_transf_matrix[1][1] 0.006768 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000018 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010334 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007717 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 ZN A 1 801 1 ZN ZN . E 4 ZN B 1 1101 1 ZN ZN . F 5 CLT B 1 1102 1 CLT PBA . G 6 HOH A 1 901 37 HOH HOH . G 6 HOH A 2 902 11 HOH HOH . G 6 HOH A 3 903 36 HOH HOH . G 6 HOH A 4 904 4 HOH HOH . G 6 HOH A 5 905 23 HOH HOH . G 6 HOH A 6 906 18 HOH HOH . G 6 HOH A 7 907 21 HOH HOH . G 6 HOH A 8 908 31 HOH HOH . G 6 HOH A 9 909 49 HOH HOH . G 6 HOH A 10 910 15 HOH HOH . G 6 HOH A 11 911 35 HOH HOH . G 6 HOH A 12 912 16 HOH HOH . G 6 HOH A 13 913 41 HOH HOH . G 6 HOH A 14 914 45 HOH HOH . G 6 HOH A 15 915 33 HOH HOH . G 6 HOH A 16 916 25 HOH HOH . H 6 HOH B 1 1201 44 HOH HOH . H 6 HOH B 2 1202 13 HOH HOH . H 6 HOH B 3 1203 17 HOH HOH . H 6 HOH B 4 1204 27 HOH HOH . H 6 HOH B 5 1205 12 HOH HOH . H 6 HOH B 6 1206 3 HOH HOH . H 6 HOH B 7 1207 7 HOH HOH . H 6 HOH B 8 1208 34 HOH HOH . H 6 HOH B 9 1209 42 HOH HOH . H 6 HOH B 10 1210 14 HOH HOH . H 6 HOH B 11 1211 48 HOH HOH . H 6 HOH B 12 1212 22 HOH HOH . H 6 HOH B 13 1213 5 HOH HOH . H 6 HOH B 14 1214 6 HOH HOH . H 6 HOH B 15 1215 10 HOH HOH . H 6 HOH B 16 1216 43 HOH HOH . H 6 HOH B 17 1217 46 HOH HOH . H 6 HOH B 18 1218 2 HOH HOH . H 6 HOH B 19 1219 28 HOH HOH . H 6 HOH B 20 1220 9 HOH HOH . H 6 HOH B 21 1221 32 HOH HOH . H 6 HOH B 22 1222 24 HOH HOH . H 6 HOH B 23 1223 20 HOH HOH . H 6 HOH B 24 1224 39 HOH HOH . H 6 HOH B 25 1225 50 HOH HOH . H 6 HOH B 26 1226 47 HOH HOH . H 6 HOH B 27 1227 30 HOH HOH . H 6 HOH B 28 1228 1 HOH HOH . H 6 HOH B 29 1229 29 HOH HOH . H 6 HOH B 30 1230 19 HOH HOH . H 6 HOH B 31 1231 38 HOH HOH . H 6 HOH B 32 1232 40 HOH HOH . I 6 HOH C 1 201 26 HOH HOH . I 6 HOH C 2 202 8 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 4 _atom_site.Cartn_x -42.47 _atom_site.Cartn_y -57.175 _atom_site.Cartn_z 53.854 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 67.79 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 1101 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 31 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #