data_5VNM
#
_model_server_result.job_id            bjNooLTQ6cNHjiJ9UtYWgA 
_model_server_result.datetime_utc      '2025-01-10 09:24:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5vnm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":1102}' 
#
_entry.id    5VNM 
#
_exptl.entry_id    5VNM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              164.201 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '4-PHENYL-BUTANOIC ACID' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90.22 
_cell.angle_gamma         90 
_cell.entry_id            5VNM 
_cell.length_a            149.183 
_cell.length_b            96.8 
_cell.length_c            130.609 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5VNM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 61 A CYS 61 1_555 D ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.449 ? 
metalc ? metalc2 A SG CYS 66 A CYS 66 1_555 D ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? 
metalc ? metalc3 A SG CYS 85 A CYS 85 1_555 D ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? 
metalc ? metalc4 A SG CYS 88 A CYS 88 1_555 D ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? 
metalc ? metalc5 B SG CYS 86 B CYS 431 1_555 E ZN ZN . B ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? 
metalc ? metalc6 B SG CYS 89 B CYS 434 1_555 E ZN ZN . B ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? 
metalc ? metalc7 B SG CYS 107 B CYS 452 1_555 E ZN ZN . B ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? 
metalc ? metalc8 B SG CYS 110 B CYS 455 1_555 E ZN ZN . B ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? 
#
_chem_comp.formula           'C10 H12 O2' 
_chem_comp.formula_weight    164.201 
_chem_comp.id                CLT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '4-PHENYL-BUTANOIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'GAMMA-PHENYL-BUTYRIC ACID' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CA CB1 CLT sing 70 n n 
CA CB2 CLT sing 71 n n 
CA HA1 CLT sing 72 n n 
CA HA2 CLT sing 73 n n 
CB1 CG CLT sing 74 n n 
CB1 HB11 CLT sing 75 n n 
CB1 HB12 CLT sing 76 n n 
CG CD CLT sing 77 n n 
CG HG1 CLT sing 78 n n 
CG HG2 CLT sing 79 n n 
CD CE1 CLT doub 80 n y 
CD CE2 CLT sing 81 n y 
CE1 CZ1 CLT sing 82 n y 
CE1 HE1 CLT sing 83 n n 
CE2 CZ2 CLT doub 84 n y 
CE2 HE2 CLT sing 85 n n 
CZ1 CH CLT doub 86 n y 
CZ1 HZ1 CLT sing 87 n n 
CZ2 CH CLT sing 88 n y 
CZ2 HZ2 CLT sing 89 n n 
CH HH CLT sing 90 n n 
CB2 OG1 CLT doub 91 n n 
CB2 OG2 CLT sing 92 n n 
OG2 HO2 CLT sing 93 n n 
#
_atom_sites.entry_id                     5VNM 
_atom_sites.fract_transf_matrix[1][1]    0.006703 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000026 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010331 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007656 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 ZN A 1 801 1 ZN ZN . 
E 4 ZN B 1 1101 1 ZN ZN . 
F 5 CLT B 1 1102 1 CLT PBA . 
G 6 HOH A 1 901 19 HOH HOH . 
G 6 HOH A 2 902 11 HOH HOH . 
G 6 HOH A 3 903 17 HOH HOH . 
G 6 HOH A 4 904 35 HOH HOH . 
G 6 HOH A 5 905 29 HOH HOH . 
G 6 HOH A 6 906 3 HOH HOH . 
G 6 HOH A 7 907 36 HOH HOH . 
G 6 HOH A 8 908 38 HOH HOH . 
G 6 HOH A 9 909 39 HOH HOH . 
G 6 HOH A 10 910 20 HOH HOH . 
G 6 HOH A 11 911 16 HOH HOH . 
H 6 HOH B 1 1201 12 HOH HOH . 
H 6 HOH B 2 1202 23 HOH HOH . 
H 6 HOH B 3 1203 27 HOH HOH . 
H 6 HOH B 4 1204 6 HOH HOH . 
H 6 HOH B 5 1205 21 HOH HOH . 
H 6 HOH B 6 1206 33 HOH HOH . 
H 6 HOH B 7 1207 15 HOH HOH . 
H 6 HOH B 8 1208 34 HOH HOH . 
H 6 HOH B 9 1209 18 HOH HOH . 
H 6 HOH B 10 1210 24 HOH HOH . 
H 6 HOH B 11 1211 5 HOH HOH . 
H 6 HOH B 12 1212 25 HOH HOH . 
H 6 HOH B 13 1213 9 HOH HOH . 
H 6 HOH B 14 1214 8 HOH HOH . 
H 6 HOH B 15 1215 22 HOH HOH . 
H 6 HOH B 16 1216 10 HOH HOH . 
H 6 HOH B 17 1217 14 HOH HOH . 
H 6 HOH B 18 1218 7 HOH HOH . 
H 6 HOH B 19 1219 32 HOH HOH . 
H 6 HOH B 20 1220 1 HOH HOH . 
H 6 HOH B 21 1221 31 HOH HOH . 
H 6 HOH B 22 1222 37 HOH HOH . 
H 6 HOH B 23 1223 30 HOH HOH . 
H 6 HOH B 24 1224 4 HOH HOH . 
H 6 HOH B 25 1225 26 HOH HOH . 
H 6 HOH B 26 1226 40 HOH HOH . 
H 6 HOH B 27 1227 28 HOH HOH . 
H 6 HOH B 28 1228 13 HOH HOH . 
I 6 HOH C 1 201 2 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CA CLT . . . F 5 -31.697 -63.956 49.855 1 125.02 ? CA CLT 1102 B 1 
HETATM 2 C CB1 CLT . . . F 5 -30.347 -64.294 49.233 1 120.73 ? CB1 CLT 1102 B 1 
HETATM 3 C CG CLT . . . F 5 -29.659 -63.046 48.684 1 122.22 ? CG CLT 1102 B 1 
HETATM 4 C CD CLT . . . F 5 -29.566 -61.968 49.762 1 118.3 ? CD CLT 1102 B 1 
HETATM 5 C CE1 CLT . . . F 5 -29.002 -62.292 50.984 1 120.55 ? CE1 CLT 1102 B 1 
HETATM 6 C CE2 CLT . . . F 5 -30.046 -60.688 49.529 1 104.6 ? CE2 CLT 1102 B 1 
HETATM 7 C CZ1 CLT . . . F 5 -28.901 -61.34 51.978 1 112.48 ? CZ1 CLT 1102 B 1 
HETATM 8 C CZ2 CLT . . . F 5 -29.949 -59.735 50.526 1 99.41 ? CZ2 CLT 1102 B 1 
HETATM 9 C CH CLT . . . F 5 -29.378 -60.065 51.743 1 100.52 ? CH CLT 1102 B 1 
HETATM 10 C CB2 CLT . . . F 5 -32.601 -63.271 48.833 1 131.01 ? CB2 CLT 1102 B 1 
HETATM 11 O OG1 CLT . . . F 5 -33.142 -63.953 47.925 1 134.23 ? OG1 CLT 1102 B 1 
HETATM 12 O OG2 CLT . . . F 5 -32.794 -62.029 48.896 1 132.13 ? OG2 CLT 1102 B 1 
#
_model_server_stats.io_time_ms              116 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           228 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           12 
#