data_5VNN # _model_server_result.job_id YGzqBanMDkItxulMYvRbcw _model_server_result.datetime_utc '2024-11-04 22:54:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5vnn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1101}' # _entry.id 5VNN # _exptl.entry_id 5VNN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 164.201 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-PHENYL-BUTANOIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 89.59 _cell.angle_gamma 90 _cell.entry_id 5VNN _cell.length_a 148.016 _cell.length_b 97.715 _cell.length_c 128.967 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5VNN _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 61 A CYS 61 1_555 D ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? metalc ? metalc2 A SG CYS 66 A CYS 66 1_555 D ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc3 A SG CYS 85 A CYS 85 1_555 D ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc4 A SG CYS 88 A CYS 88 1_555 D ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? metalc ? metalc5 B SG CYS 86 B CYS 431 1_555 F ZN ZN . B ZN 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc6 B SG CYS 89 B CYS 434 1_555 F ZN ZN . B ZN 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc7 B SG CYS 107 B CYS 452 1_555 F ZN ZN . B ZN 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc8 B SG CYS 110 B CYS 455 1_555 F ZN ZN . B ZN 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? # _chem_comp.formula 'C10 H12 O2' _chem_comp.formula_weight 164.201 _chem_comp.id CLT _chem_comp.mon_nstd_flag . _chem_comp.name '4-PHENYL-BUTANOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'GAMMA-PHENYL-BUTYRIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CA CB1 CLT sing 70 n n CA CB2 CLT sing 71 n n CA HA1 CLT sing 72 n n CA HA2 CLT sing 73 n n CB1 CG CLT sing 74 n n CB1 HB11 CLT sing 75 n n CB1 HB12 CLT sing 76 n n CG CD CLT sing 77 n n CG HG1 CLT sing 78 n n CG HG2 CLT sing 79 n n CD CE1 CLT doub 80 n y CD CE2 CLT sing 81 n y CE1 CZ1 CLT sing 82 n y CE1 HE1 CLT sing 83 n n CE2 CZ2 CLT doub 84 n y CE2 HE2 CLT sing 85 n n CZ1 CH CLT doub 86 n y CZ1 HZ1 CLT sing 87 n n CZ2 CH CLT sing 88 n y CZ2 HZ2 CLT sing 89 n n CH HH CLT sing 90 n n CB2 OG1 CLT doub 91 n n CB2 OG2 CLT sing 92 n n OG2 HO2 CLT sing 93 n n # _atom_sites.entry_id 5VNN _atom_sites.fract_transf_matrix[1][1] 0.006756 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] -0.000048 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010234 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007754 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 ZN A 1 801 1 ZN ZN . E 5 CLT B 1 1101 1 CLT PBA . F 4 ZN B 1 1102 1 ZN ZN . G 6 HOH A 1 901 26 HOH HOH . G 6 HOH A 2 902 40 HOH HOH . G 6 HOH A 3 903 36 HOH HOH . G 6 HOH A 4 904 25 HOH HOH . G 6 HOH A 5 905 22 HOH HOH . G 6 HOH A 6 906 34 HOH HOH . G 6 HOH A 7 907 14 HOH HOH . G 6 HOH A 8 908 5 HOH HOH . G 6 HOH A 9 909 35 HOH HOH . G 6 HOH A 10 910 27 HOH HOH . G 6 HOH A 11 911 6 HOH HOH . G 6 HOH A 12 912 38 HOH HOH . G 6 HOH A 13 913 9 HOH HOH . G 6 HOH A 14 914 20 HOH HOH . G 6 HOH A 15 915 12 HOH HOH . G 6 HOH A 16 916 29 HOH HOH . G 6 HOH A 17 917 45 HOH HOH . G 6 HOH A 18 918 39 HOH HOH . G 6 HOH A 19 919 43 HOH HOH . G 6 HOH A 20 920 42 HOH HOH . G 6 HOH A 21 921 44 HOH HOH . G 6 HOH A 22 922 24 HOH HOH . H 6 HOH B 1 1201 11 HOH HOH . H 6 HOH B 2 1202 16 HOH HOH . H 6 HOH B 3 1203 8 HOH HOH . H 6 HOH B 4 1204 15 HOH HOH . H 6 HOH B 5 1205 30 HOH HOH . H 6 HOH B 6 1206 1 HOH HOH . H 6 HOH B 7 1207 28 HOH HOH . H 6 HOH B 8 1208 19 HOH HOH . H 6 HOH B 9 1209 31 HOH HOH . H 6 HOH B 10 1210 4 HOH HOH . H 6 HOH B 11 1211 37 HOH HOH . H 6 HOH B 12 1212 10 HOH HOH . H 6 HOH B 13 1213 21 HOH HOH . H 6 HOH B 14 1214 23 HOH HOH . H 6 HOH B 15 1215 13 HOH HOH . H 6 HOH B 16 1216 41 HOH HOH . H 6 HOH B 17 1217 18 HOH HOH . H 6 HOH B 18 1218 2 HOH HOH . I 6 HOH C 1 201 7 HOH HOH . I 6 HOH C 2 202 17 HOH HOH . I 6 HOH C 3 203 32 HOH HOH . I 6 HOH C 4 204 33 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CA CLT . . . E 5 -31.201 -63.546 49.171 1 107.18 ? CA CLT 1101 B 1 HETATM 2 C CB1 CLT . . . E 5 -29.775 -63.862 48.729 1 105.55 ? CB1 CLT 1101 B 1 HETATM 3 C CG CLT . . . E 5 -29.073 -62.61 48.21 1 104.83 ? CG CLT 1101 B 1 HETATM 4 C CD CLT . . . E 5 -28.933 -61.561 49.31 1 104.01 ? CD CLT 1101 B 1 HETATM 5 C CE1 CLT . . . E 5 -28.277 -61.897 50.481 1 106 ? CE1 CLT 1101 B 1 HETATM 6 C CE2 CLT . . . E 5 -29.459 -60.291 49.146 1 102.34 ? CE2 CLT 1101 B 1 HETATM 7 C CZ1 CLT . . . E 5 -28.134 -60.964 51.49 1 104.23 ? CZ1 CLT 1101 B 1 HETATM 8 C CZ2 CLT . . . E 5 -29.321 -59.356 50.157 1 102.96 ? CZ2 CLT 1101 B 1 HETATM 9 C CH CLT . . . E 5 -28.66 -59.696 51.327 1 102.89 ? CH CLT 1101 B 1 HETATM 10 C CB2 CLT . . . E 5 -31.994 -62.898 48.04 1 110.73 ? CB2 CLT 1101 B 1 HETATM 11 O OG1 CLT . . . E 5 -32.48 -63.613 47.125 1 112.3 ? OG1 CLT 1101 B 1 HETATM 12 O OG2 CLT . . . E 5 -32.155 -61.65 48.015 1 112.11 ? OG2 CLT 1101 B 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 342 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 12 #