data_5VNN # _model_server_result.job_id FQphFfRDt7GSHjyqLsNwKg _model_server_result.datetime_utc '2024-11-04 23:01:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5vnn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1102}' # _entry.id 5VNN # _exptl.entry_id 5VNN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 89.59 _cell.angle_gamma 90 _cell.entry_id 5VNN _cell.length_a 148.016 _cell.length_b 97.715 _cell.length_c 128.967 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5VNN _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 61 A CYS 61 1_555 D ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? metalc ? metalc2 A SG CYS 66 A CYS 66 1_555 D ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc3 A SG CYS 85 A CYS 85 1_555 D ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc4 A SG CYS 88 A CYS 88 1_555 D ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? metalc ? metalc5 B SG CYS 86 B CYS 431 1_555 F ZN ZN . B ZN 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc6 B SG CYS 89 B CYS 434 1_555 F ZN ZN . B ZN 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc7 B SG CYS 107 B CYS 452 1_555 F ZN ZN . B ZN 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc8 B SG CYS 110 B CYS 455 1_555 F ZN ZN . B ZN 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5VNN _atom_sites.fract_transf_matrix[1][1] 0.006756 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] -0.000048 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010234 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007754 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 ZN A 1 801 1 ZN ZN . E 5 CLT B 1 1101 1 CLT PBA . F 4 ZN B 1 1102 1 ZN ZN . G 6 HOH A 1 901 26 HOH HOH . G 6 HOH A 2 902 40 HOH HOH . G 6 HOH A 3 903 36 HOH HOH . G 6 HOH A 4 904 25 HOH HOH . G 6 HOH A 5 905 22 HOH HOH . G 6 HOH A 6 906 34 HOH HOH . G 6 HOH A 7 907 14 HOH HOH . G 6 HOH A 8 908 5 HOH HOH . G 6 HOH A 9 909 35 HOH HOH . G 6 HOH A 10 910 27 HOH HOH . G 6 HOH A 11 911 6 HOH HOH . G 6 HOH A 12 912 38 HOH HOH . G 6 HOH A 13 913 9 HOH HOH . G 6 HOH A 14 914 20 HOH HOH . G 6 HOH A 15 915 12 HOH HOH . G 6 HOH A 16 916 29 HOH HOH . G 6 HOH A 17 917 45 HOH HOH . G 6 HOH A 18 918 39 HOH HOH . G 6 HOH A 19 919 43 HOH HOH . G 6 HOH A 20 920 42 HOH HOH . G 6 HOH A 21 921 44 HOH HOH . G 6 HOH A 22 922 24 HOH HOH . H 6 HOH B 1 1201 11 HOH HOH . H 6 HOH B 2 1202 16 HOH HOH . H 6 HOH B 3 1203 8 HOH HOH . H 6 HOH B 4 1204 15 HOH HOH . H 6 HOH B 5 1205 30 HOH HOH . H 6 HOH B 6 1206 1 HOH HOH . H 6 HOH B 7 1207 28 HOH HOH . H 6 HOH B 8 1208 19 HOH HOH . H 6 HOH B 9 1209 31 HOH HOH . H 6 HOH B 10 1210 4 HOH HOH . H 6 HOH B 11 1211 37 HOH HOH . H 6 HOH B 12 1212 10 HOH HOH . H 6 HOH B 13 1213 21 HOH HOH . H 6 HOH B 14 1214 23 HOH HOH . H 6 HOH B 15 1215 13 HOH HOH . H 6 HOH B 16 1216 41 HOH HOH . H 6 HOH B 17 1217 18 HOH HOH . H 6 HOH B 18 1218 2 HOH HOH . I 6 HOH C 1 201 7 HOH HOH . I 6 HOH C 2 202 17 HOH HOH . I 6 HOH C 3 203 32 HOH HOH . I 6 HOH C 4 204 33 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 4 _atom_site.Cartn_x -41.469 _atom_site.Cartn_y -57.029 _atom_site.Cartn_z 53.521 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 146.91 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 1102 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 30 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #